Wall clock time and date at job start Wed Apr 1 2020 04:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47195 * 2 1 4 4 C 1.53002 * 109.46668 * 119.99516 * 2 1 3 5 5 C 1.52996 * 115.55440 * 325.67334 * 4 2 1 6 6 C 1.53006 * 117.51847 * 111.37568 * 4 2 1 7 7 C 1.53000 * 60.00123 * 107.47652 * 6 4 2 8 8 H 1.08993 * 117.52144 * 252.52024 * 7 6 4 9 9 C 1.50701 * 117.49570 * 107.48838 * 7 6 4 10 10 O 1.21287 * 120.00120 * 291.38193 * 9 7 6 11 11 N 1.34777 * 120.00157 * 111.37754 * 9 7 6 12 12 C 1.46501 * 120.00323 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.46913 * 179.97438 * 12 11 9 14 14 C 1.35353 * 126.74844 * 95.25264 * 13 12 11 15 15 N 1.35309 * 106.17465 * 180.11975 * 14 13 12 16 16 C 1.46506 * 125.86895 * 179.89830 * 15 14 13 17 17 C 1.53495 * 114.21032 * 274.72173 * 16 15 14 18 18 N 1.47068 * 87.98832 * 87.51740 * 17 16 15 19 19 C 1.36931 * 136.05648 * 207.08648 * 18 17 16 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99680 * 179.72253 * 19 18 17 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48496 * 109.47141 * 59.99751 * 23 21 19 25 25 H 1.48490 * 109.47071 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 300.00028 * 23 21 19 27 27 C 1.47071 * 87.88415 * 27.34050 * 18 17 16 28 28 N 1.28716 * 108.26486 * 359.64354 * 15 14 13 29 29 N 1.28633 * 110.17810 * 0.22260 * 28 15 14 30 30 H 1.08994 * 109.47582 * 300.00591 * 1 2 3 31 31 H 1.09005 * 109.46578 * 60.00525 * 1 2 3 32 32 H 1.09002 * 109.46992 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47582 * 239.99409 * 2 1 3 34 34 H 1.08997 * 109.47150 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46700 * 299.99888 * 3 2 1 36 36 H 1.09003 * 109.47244 * 59.99498 * 3 2 1 37 37 H 1.09004 * 109.47216 * 274.33172 * 5 4 2 38 38 H 1.09006 * 109.47174 * 34.32846 * 5 4 2 39 39 H 1.08999 * 109.47639 * 154.32917 * 5 4 2 40 40 H 1.09000 * 117.49605 * 359.97438 * 6 4 2 41 41 H 1.08989 * 117.49957 * 214.97210 * 6 4 2 42 42 H 0.97001 * 119.99463 * 0.02562 * 11 9 7 43 43 H 1.09004 * 109.46993 * 60.00194 * 12 11 9 44 44 H 1.08997 * 109.47176 * 300.00254 * 12 11 9 45 45 H 1.08004 * 126.91595 * 0.02562 * 14 13 12 46 46 H 1.08999 * 113.41170 * 141.51597 * 16 15 14 47 47 H 1.09004 * 113.46737 * 332.73786 * 17 16 15 48 48 H 1.08995 * 113.47006 * 202.30084 * 17 16 15 49 49 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 50 50 H 1.08998 * 113.46338 * 87.43811 * 27 18 17 51 51 H 1.08993 * 113.47050 * 217.87717 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.1851 -0.5480 2.5064 6 6 2.7418 -2.0664 1.0521 7 6 3.5549 -0.8280 1.4344 8 1 4.1883 -0.3845 0.6663 9 6 4.0909 -0.7546 2.8410 10 8 3.3286 -0.6158 3.7740 11 7 5.4175 -0.8432 3.0622 12 6 5.9385 -0.7724 4.4296 13 6 7.4401 -0.8963 4.4019 14 6 8.3365 0.1179 4.3973 15 7 9.5595 -0.4601 4.3669 16 6 10.8427 0.2466 4.3490 17 6 11.3108 0.6661 2.9486 18 7 10.5396 1.9066 3.1190 19 6 9.9182 2.8029 2.2910 20 1 9.9392 2.6545 1.2214 21 6 9.2559 3.8989 2.8267 22 7 9.2297 4.0795 4.1301 23 14 8.4016 5.1175 1.6976 24 1 7.3555 4.4149 0.9119 25 1 7.7741 6.1898 2.5107 26 1 9.3967 5.7166 0.7724 27 6 10.7349 1.7644 4.5698 28 7 9.4020 -1.7376 4.3617 29 7 8.1495 -2.0303 4.3823 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.4775 0.3670 3.0215 38 1 0.1337 -0.4866 2.2252 39 1 1.3349 -1.4012 3.1681 40 1 2.8400 -2.4380 0.0322 41 1 2.5945 -2.8279 1.8178 42 1 6.0272 -0.9539 2.3159 43 1 5.5180 -1.5856 5.0212 44 1 5.6605 0.1826 4.8753 45 1 8.1192 1.1757 4.4131 46 1 11.6119 -0.2370 4.9511 47 1 10.9308 0.0245 2.1536 48 1 12.3864 0.8294 2.8813 49 1 8.7672 4.8457 4.5044 50 1 11.6586 2.2173 4.9298 51 1 9.8643 2.0585 5.1559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094332252.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:53 Heat of formation + Delta-G solvation = 141.611443 kcal Electronic energy + Delta-G solvation = -30990.712561 eV Core-core repulsion = 26930.299265 eV Total energy + Delta-G solvation = -4060.413296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.87038 -40.33177 -38.55859 -37.94369 -34.97024 -33.51355 -33.14298 -31.96991 -31.01683 -28.75338 -28.09073 -27.06811 -26.81293 -25.08907 -24.36978 -23.72441 -22.64301 -22.00594 -20.96626 -20.20907 -19.53075 -18.55870 -17.33947 -17.10183 -16.46476 -16.09400 -15.67984 -15.32270 -15.09234 -14.95245 -14.67831 -14.25173 -14.05715 -13.86748 -13.64017 -13.45985 -13.20500 -13.01426 -12.95768 -12.72230 -12.52196 -12.38543 -12.31680 -11.89798 -11.69209 -11.61694 -11.30464 -11.28460 -11.25242 -11.04746 -11.01999 -10.71539 -10.52435 -10.40230 -10.25165 -10.16126 -9.91030 -9.83579 -9.53595 -9.36910 -9.13865 -8.90457 -8.77931 -7.26109 -6.05454 -3.40624 2.07690 2.58925 2.63885 2.80455 3.24888 3.29967 3.31734 3.49679 3.72009 4.20402 4.47090 4.51533 4.53274 4.69291 4.74735 4.79250 4.81110 5.06288 5.09358 5.16955 5.19252 5.23994 5.33367 5.46662 5.51442 5.55783 5.61297 5.66966 5.68910 5.72316 5.80736 5.81925 5.85028 5.89807 5.95771 5.98829 6.05705 6.11345 6.15152 6.17321 6.20267 6.34301 6.44567 6.47601 6.57954 6.60726 6.73041 7.09275 7.24895 7.64972 7.66135 8.36271 8.74459 8.93203 9.41017 10.24849 11.11486 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009520 B = 0.003197 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.341903 B = 8755.298977 C =10873.182991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.060 4.060 3 C -0.148 4.148 4 C -0.082 4.082 5 C -0.107 4.107 6 C -0.147 4.147 7 C -0.186 4.186 8 H 0.122 0.878 9 C 0.545 3.455 10 O -0.539 6.539 11 N -0.717 5.717 12 C 0.219 3.781 13 C -0.077 4.077 14 C 0.026 3.974 15 N -0.254 5.254 16 C 0.069 3.931 17 C 0.115 3.885 18 N -0.606 5.606 19 C -0.225 4.225 20 H 0.083 0.917 21 C 0.001 3.999 22 N -0.920 5.920 23 Si 0.913 3.087 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.284 1.284 27 C 0.151 3.849 28 N -0.100 5.100 29 N -0.265 5.265 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.403 0.597 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.199 0.801 46 H 0.116 0.884 47 H 0.051 0.949 48 H 0.061 0.939 49 H 0.259 0.741 50 H 0.057 0.943 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.064 -8.343 -4.609 13.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.205 4.205 4 C -0.083 4.083 5 C -0.164 4.164 6 C -0.185 4.185 7 C -0.207 4.207 8 H 0.139 0.861 9 C 0.331 3.669 10 O -0.417 6.417 11 N -0.368 5.368 12 C 0.094 3.906 13 C -0.215 4.215 14 C -0.128 4.128 15 N -0.044 5.044 16 C -0.035 4.035 17 C -0.013 4.013 18 N -0.332 5.332 19 C -0.352 4.352 20 H 0.101 0.899 21 C -0.196 4.196 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.210 1.210 27 C 0.024 3.976 28 N -0.079 5.079 29 N -0.133 5.133 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.237 0.763 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.216 0.784 46 H 0.134 0.866 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.056 -9.292 -4.014 14.268 hybrid contribution 0.070 1.927 -1.008 2.176 sum -9.986 -7.365 -5.023 13.387 Atomic orbital electron populations 1.21898 0.94777 1.01790 1.01853 1.20693 0.95918 0.96022 0.95174 1.21837 1.01379 0.95476 1.01802 1.21572 0.90825 0.98252 0.97650 1.21452 0.97243 1.03583 0.94099 1.23189 1.01850 0.90717 1.02706 1.22328 0.96135 1.06147 0.96106 0.86056 1.19592 0.81791 0.75790 0.89691 1.90689 1.56713 1.49476 1.44809 1.46017 1.07255 1.74100 1.09476 1.19212 0.84870 1.02928 0.83541 1.21655 0.96747 0.89762 1.13347 1.23693 0.83524 1.02261 1.03273 1.46795 1.07731 1.05035 1.44825 1.23562 0.81135 0.96480 1.02321 1.22757 0.96444 0.89230 0.92846 1.45736 1.59203 1.25934 1.02354 1.18853 1.25773 1.01770 0.88795 0.89942 1.24758 1.00523 0.98196 0.96124 1.69740 1.46676 1.30783 1.09418 0.86187 0.79363 0.80707 0.79483 1.20834 1.21293 1.21013 1.22583 1.01622 0.84354 0.89037 1.78196 1.13113 0.95488 1.21108 1.74948 0.96736 1.25082 1.16492 0.91885 0.92814 0.92573 0.91135 0.92474 0.92728 0.92342 0.91402 0.92730 0.91835 0.88068 0.88293 0.76300 0.90135 0.89786 0.78369 0.86614 0.93119 0.92146 0.93098 0.92546 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.20 37.16 0.30 -0.85 16 2 C -0.06 -0.54 2.99 -90.62 -0.27 -0.81 16 3 C -0.15 -1.45 9.03 37.16 0.34 -1.11 16 4 C -0.08 -0.87 1.91 -154.50 -0.29 -1.16 16 5 C -0.11 -1.25 7.73 37.16 0.29 -0.96 16 6 C -0.15 -1.45 9.53 -26.73 -0.25 -1.70 16 7 C -0.19 -2.15 5.39 -91.77 -0.49 -2.64 16 8 H 0.12 1.29 7.61 -51.93 -0.40 0.89 16 9 C 0.54 7.83 7.59 -10.98 -0.08 7.75 16 10 O -0.54 -9.04 13.10 5.55 0.07 -8.97 16 11 N -0.72 -10.21 5.55 -61.47 -0.34 -10.55 16 12 C 0.22 3.34 6.23 -5.19 -0.03 3.31 16 13 C -0.08 -1.32 6.62 -82.78 -0.55 -1.87 16 14 C 0.03 0.48 10.38 -17.05 -0.18 0.30 16 15 N -0.25 -4.61 3.56 -54.43 -0.19 -4.80 16 16 C 0.07 1.15 5.37 -67.67 -0.36 0.79 16 17 C 0.11 2.05 8.49 -8.50 -0.07 1.98 16 18 N -0.61 -13.40 3.51 -184.60 -0.65 -14.05 16 19 C -0.23 -5.62 10.75 -15.06 -0.16 -5.78 16 20 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 21 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 22 N -0.92 -24.09 11.50 55.49 0.64 -23.45 16 23 Si 0.91 20.46 29.55 -169.99 -5.02 15.43 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 C 0.15 2.97 6.59 -8.36 -0.06 2.91 16 28 N -0.10 -1.89 13.16 60.35 0.79 -1.09 16 29 N -0.26 -4.94 12.41 33.29 0.41 -4.52 16 30 H 0.06 0.51 6.45 -51.93 -0.33 0.18 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.59 7.90 -51.93 -0.41 0.18 16 34 H 0.06 0.60 7.29 -51.93 -0.38 0.22 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.92 7.26 -51.93 -0.38 0.54 16 38 H 0.05 0.53 5.58 -51.93 -0.29 0.24 16 39 H 0.06 0.82 7.01 -51.93 -0.36 0.45 16 40 H 0.10 0.81 8.05 -51.93 -0.42 0.40 16 41 H 0.10 1.02 8.05 -51.94 -0.42 0.60 16 42 H 0.40 5.45 8.46 -40.82 -0.35 5.10 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.20 4.01 7.21 -52.48 -0.38 3.63 16 46 H 0.12 1.59 8.14 -51.93 -0.42 1.17 16 47 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 50 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 51 H 0.09 1.89 5.94 -51.93 -0.31 1.58 16 LS Contribution 410.33 15.07 6.18 6.18 Total: -1.00 -28.69 410.33 -8.27 -36.96 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -8.19 Total: 8.78 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.98 Total: 0.08 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.66 Total: -58.48 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.07 Total: -8.97 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -28.69 -8.27 -36.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094332252.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.576 kcal (2) G-P(sol) polarization free energy of solvation -28.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds