Wall clock time and date at job start Wed Apr 1 2020 04:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47195 * 2 1 4 4 C 1.53002 * 109.46668 * 119.99516 * 2 1 3 5 5 C 1.52996 * 115.55440 * 325.67334 * 4 2 1 6 6 C 1.53006 * 117.51847 * 111.37568 * 4 2 1 7 7 C 1.53000 * 60.00123 * 107.47652 * 6 4 2 8 8 H 1.08993 * 117.52144 * 252.52024 * 7 6 4 9 9 C 1.50701 * 117.49570 * 107.48838 * 7 6 4 10 10 O 1.21287 * 120.00120 * 291.38193 * 9 7 6 11 11 N 1.34777 * 120.00157 * 111.37754 * 9 7 6 12 12 C 1.46501 * 120.00323 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.46913 * 179.97438 * 12 11 9 14 14 C 1.35353 * 126.74844 * 95.25264 * 13 12 11 15 15 N 1.35309 * 106.17465 * 180.11975 * 14 13 12 16 16 C 1.46506 * 125.86895 * 179.89830 * 15 14 13 17 17 C 1.53495 * 114.21032 * 274.72173 * 16 15 14 18 18 N 1.47068 * 87.98832 * 87.51740 * 17 16 15 19 19 C 1.36931 * 136.05648 * 207.08648 * 18 17 16 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99680 * 179.72253 * 19 18 17 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48496 * 109.47141 * 59.99751 * 23 21 19 25 25 H 1.48490 * 109.47071 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 300.00028 * 23 21 19 27 27 C 1.47071 * 87.88415 * 27.34050 * 18 17 16 28 28 N 1.28716 * 108.26486 * 359.64354 * 15 14 13 29 29 N 1.28633 * 110.17810 * 0.22260 * 28 15 14 30 30 H 1.08994 * 109.47582 * 300.00591 * 1 2 3 31 31 H 1.09005 * 109.46578 * 60.00525 * 1 2 3 32 32 H 1.09002 * 109.46992 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47582 * 239.99409 * 2 1 3 34 34 H 1.08997 * 109.47150 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46700 * 299.99888 * 3 2 1 36 36 H 1.09003 * 109.47244 * 59.99498 * 3 2 1 37 37 H 1.09004 * 109.47216 * 274.33172 * 5 4 2 38 38 H 1.09006 * 109.47174 * 34.32846 * 5 4 2 39 39 H 1.08999 * 109.47639 * 154.32917 * 5 4 2 40 40 H 1.09000 * 117.49605 * 359.97438 * 6 4 2 41 41 H 1.08989 * 117.49957 * 214.97210 * 6 4 2 42 42 H 0.97001 * 119.99463 * 0.02562 * 11 9 7 43 43 H 1.09004 * 109.46993 * 60.00194 * 12 11 9 44 44 H 1.08997 * 109.47176 * 300.00254 * 12 11 9 45 45 H 1.08004 * 126.91595 * 0.02562 * 14 13 12 46 46 H 1.08999 * 113.41170 * 141.51597 * 16 15 14 47 47 H 1.09004 * 113.46737 * 332.73786 * 17 16 15 48 48 H 1.08995 * 113.47006 * 202.30084 * 17 16 15 49 49 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 50 50 H 1.08998 * 113.46338 * 87.43811 * 27 18 17 51 51 H 1.08993 * 113.47050 * 217.87717 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.1851 -0.5480 2.5064 6 6 2.7418 -2.0664 1.0521 7 6 3.5549 -0.8280 1.4344 8 1 4.1883 -0.3845 0.6663 9 6 4.0909 -0.7546 2.8410 10 8 3.3286 -0.6158 3.7740 11 7 5.4175 -0.8432 3.0622 12 6 5.9385 -0.7724 4.4296 13 6 7.4401 -0.8963 4.4019 14 6 8.3365 0.1179 4.3973 15 7 9.5595 -0.4601 4.3669 16 6 10.8427 0.2466 4.3490 17 6 11.3108 0.6661 2.9486 18 7 10.5396 1.9066 3.1190 19 6 9.9182 2.8029 2.2910 20 1 9.9392 2.6545 1.2214 21 6 9.2559 3.8989 2.8267 22 7 9.2297 4.0795 4.1301 23 14 8.4016 5.1175 1.6976 24 1 7.3555 4.4149 0.9119 25 1 7.7741 6.1898 2.5107 26 1 9.3967 5.7166 0.7724 27 6 10.7349 1.7644 4.5698 28 7 9.4020 -1.7376 4.3617 29 7 8.1495 -2.0303 4.3823 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.4775 0.3670 3.0215 38 1 0.1337 -0.4866 2.2252 39 1 1.3349 -1.4012 3.1681 40 1 2.8400 -2.4380 0.0322 41 1 2.5945 -2.8279 1.8178 42 1 6.0272 -0.9539 2.3159 43 1 5.5180 -1.5856 5.0212 44 1 5.6605 0.1826 4.8753 45 1 8.1192 1.1757 4.4131 46 1 11.6119 -0.2370 4.9511 47 1 10.9308 0.0245 2.1536 48 1 12.3864 0.8294 2.8813 49 1 8.7672 4.8457 4.5044 50 1 11.6586 2.2173 4.9298 51 1 9.8643 2.0585 5.1559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094332252.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:52 Heat of formation + Delta-G solvation = 125.127133 kcal Electronic energy + Delta-G solvation = -30991.427374 eV Core-core repulsion = 26930.299265 eV Total energy + Delta-G solvation = -4061.128109 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.33045 -41.35947 -40.08107 -38.94260 -36.23971 -34.79697 -34.30139 -33.63194 -32.40477 -29.84106 -29.64738 -28.19223 -27.68738 -26.58593 -26.00004 -24.78108 -23.61073 -23.41145 -22.37262 -21.32434 -21.01483 -19.43735 -18.95351 -18.30581 -17.81376 -17.46186 -16.97439 -16.67627 -16.48113 -16.08985 -15.83958 -15.59260 -15.56089 -15.23602 -14.77314 -14.68630 -14.41111 -14.30529 -13.90861 -13.76782 -13.53307 -13.42916 -13.31481 -13.27951 -13.26611 -12.82803 -12.77438 -12.67586 -12.38838 -12.10282 -12.09111 -12.06759 -12.01606 -11.87515 -11.54171 -11.45242 -11.02345 -11.01199 -10.91261 -10.82775 -10.57148 -10.16673 -10.12083 -9.04195 -7.96864 -5.30124 0.60189 1.22974 1.38339 1.46107 1.46888 1.51539 1.52415 2.34666 2.41700 2.80579 3.08103 3.20498 3.32390 3.35128 3.60813 3.69121 3.80608 3.82660 4.00074 4.05162 4.14622 4.17693 4.22346 4.34871 4.42404 4.49646 4.57415 4.60129 4.65876 4.72164 4.82398 4.84285 4.87120 4.91193 4.98335 4.98899 5.03315 5.07066 5.08747 5.09039 5.10379 5.18279 5.24259 5.34738 5.38000 5.43953 5.46100 5.65114 5.76171 5.82652 6.50062 6.84158 7.21537 7.46135 7.53134 8.45209 9.18939 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009520 B = 0.003197 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.341903 B = 8755.298977 C =10873.182991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.056 4.056 3 C -0.149 4.149 4 C -0.084 4.084 5 C -0.102 4.102 6 C -0.129 4.129 7 C -0.199 4.199 8 H 0.133 0.867 9 C 0.540 3.460 10 O -0.568 6.568 11 N -0.715 5.715 12 C 0.224 3.776 13 C -0.060 4.060 14 C 0.014 3.986 15 N -0.253 5.253 16 C 0.085 3.915 17 C 0.120 3.880 18 N -0.634 5.634 19 C -0.227 4.227 20 H 0.080 0.920 21 C -0.044 4.044 22 N -0.942 5.942 23 Si 0.963 3.037 24 H -0.280 1.280 25 H -0.296 1.296 26 H -0.280 1.280 27 C 0.151 3.849 28 N -0.102 5.102 29 N -0.277 5.277 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.128 0.872 41 H 0.093 0.907 42 H 0.407 0.593 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.180 0.820 46 H 0.158 0.842 47 H 0.045 0.955 48 H 0.092 0.908 49 H 0.251 0.749 50 H 0.067 0.933 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.948 -9.613 -6.246 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.206 4.206 4 C -0.085 4.085 5 C -0.158 4.158 6 C -0.167 4.167 7 C -0.220 4.220 8 H 0.151 0.849 9 C 0.329 3.671 10 O -0.448 6.448 11 N -0.366 5.366 12 C 0.099 3.901 13 C -0.199 4.199 14 C -0.140 4.140 15 N -0.044 5.044 16 C -0.017 4.017 17 C -0.007 4.007 18 N -0.361 5.361 19 C -0.354 4.354 20 H 0.098 0.902 21 C -0.239 4.239 22 N -0.590 5.590 23 Si 0.792 3.208 24 H -0.206 1.206 25 H -0.222 1.222 26 H -0.207 1.207 27 C 0.025 3.975 28 N -0.081 5.081 29 N -0.144 5.144 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.146 0.854 41 H 0.111 0.889 42 H 0.242 0.758 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.197 0.803 46 H 0.175 0.825 47 H 0.063 0.937 48 H 0.110 0.890 49 H 0.060 0.940 50 H 0.085 0.915 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.909 -10.595 -5.673 15.576 hybrid contribution 0.059 2.283 -0.480 2.334 sum -9.850 -8.312 -6.153 14.282 Atomic orbital electron populations 1.21885 0.93791 1.02394 1.02115 1.20712 0.96703 0.95222 0.94754 1.21847 1.00712 0.96261 1.01772 1.21660 0.89794 0.99242 0.97794 1.21354 0.98674 1.01506 0.94299 1.23285 0.99648 0.89831 1.03887 1.22346 0.96963 1.08281 0.94385 0.84942 1.20134 0.81392 0.74865 0.90739 1.90680 1.57268 1.50759 1.46050 1.45990 1.07524 1.74026 1.09075 1.19140 0.83794 1.02836 0.84370 1.21777 0.97283 0.88995 1.11797 1.23477 0.84262 1.01585 1.04668 1.46929 1.08018 1.04953 1.44456 1.23562 0.81223 0.94862 1.02094 1.22928 0.97492 0.87047 0.93197 1.45930 1.60064 1.26679 1.03396 1.19056 1.25319 1.01874 0.89199 0.90234 1.25315 1.01726 0.99776 0.97061 1.69876 1.47768 1.30870 1.10442 0.85391 0.78515 0.78858 0.78031 1.20573 1.22235 1.20655 1.22550 1.00872 0.86555 0.87569 1.78158 1.13247 0.95474 1.21234 1.74941 0.96873 1.25433 1.17126 0.92555 0.91669 0.91782 0.89591 0.93504 0.91422 0.93719 0.93956 0.90877 0.93449 0.85424 0.88854 0.75790 0.89857 0.90179 0.80321 0.82496 0.93652 0.89045 0.93998 0.91544 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.20 71.98 0.59 -1.38 16 2 C -0.06 -0.89 2.99 -10.79 -0.03 -0.93 16 3 C -0.15 -2.75 9.03 71.98 0.65 -2.10 16 4 C -0.08 -1.68 1.91 -52.18 -0.10 -1.78 16 5 C -0.10 -2.36 7.73 71.98 0.56 -1.81 16 6 C -0.13 -2.28 9.53 30.60 0.29 -1.99 16 7 C -0.20 -4.41 5.39 -11.54 -0.06 -4.47 16 8 H 0.13 2.63 7.61 -2.39 -0.02 2.62 16 9 C 0.54 15.63 7.59 87.66 0.67 16.30 16 10 O -0.57 -19.56 13.10 -3.05 -0.04 -19.60 16 11 N -0.71 -20.40 5.55 -466.78 -2.59 -22.99 16 12 C 0.22 6.89 6.23 85.63 0.53 7.43 16 13 C -0.06 -2.05 6.62 41.60 0.28 -1.78 16 14 C 0.01 0.52 10.38 83.49 0.87 1.38 16 15 N -0.25 -8.89 3.56 -326.13 -1.16 -10.05 16 16 C 0.09 2.68 5.37 45.55 0.24 2.92 16 17 C 0.12 4.02 8.49 83.18 0.71 4.72 16 18 N -0.63 -27.60 3.51 -737.95 -2.59 -30.20 16 19 C -0.23 -11.29 10.75 84.04 0.90 -10.38 16 20 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 21 C -0.04 -2.25 5.50 84.86 0.47 -1.79 16 22 N -0.94 -50.28 11.50 21.65 0.25 -50.03 16 23 Si 0.96 42.39 29.55 68.60 2.03 44.42 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 26 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 27 C 0.15 5.83 6.59 83.27 0.55 6.38 16 28 N -0.10 -3.70 13.16 37.02 0.49 -3.21 16 29 N -0.28 -10.05 12.41 -48.60 -0.60 -10.65 16 30 H 0.06 0.84 6.45 -2.39 -0.02 0.82 16 31 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 1.16 7.90 -2.39 -0.02 1.14 16 34 H 0.05 0.95 7.29 -2.39 -0.02 0.93 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.04 1.19 7.26 -2.39 -0.02 1.17 16 38 H 0.07 1.38 5.58 -2.38 -0.01 1.37 16 39 H 0.05 1.23 7.01 -2.39 -0.02 1.22 16 40 H 0.13 1.61 8.05 -2.39 -0.02 1.59 16 41 H 0.09 1.79 8.05 -2.39 -0.02 1.77 16 42 H 0.41 10.88 8.46 -92.71 -0.78 10.09 16 43 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 44 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.18 7.51 7.21 -2.91 -0.02 7.49 16 46 H 0.16 3.71 8.14 -2.39 -0.02 3.69 16 47 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 49 H 0.25 13.36 8.31 -92.70 -0.77 12.59 16 50 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 51 H 0.06 2.68 5.94 -2.39 -0.01 2.66 16 Total: -1.00 -61.95 410.33 3.04 -58.91 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: 0.16 Total: 32.69 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 7.11 Total: 10.72 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -6.21 Total: -127.13 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.04 Total: -19.60 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -61.95 3.04 -58.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094332252.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.036 kcal (2) G-P(sol) polarization free energy of solvation -61.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds