Wall clock time and date at job start Wed Apr 1 2020 04:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47055 * 2 1 4 4 C 1.53002 * 109.47001 * 239.99914 * 2 1 3 5 5 C 1.50697 * 109.46976 * 120.00088 * 2 1 3 6 6 C 1.32990 * 120.00252 * 359.97438 * 5 2 1 7 7 C 1.47104 * 120.00240 * 180.02562 * 6 5 2 8 8 O 1.21617 * 119.99973 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00140 * 180.02562 * 7 6 5 10 10 C 1.47423 * 125.64524 * 0.03902 * 9 7 6 11 11 C 1.54912 * 104.82784 * 204.09190 * 10 9 7 12 12 C 1.55158 * 101.58549 * 322.99288 * 11 10 9 13 13 H 1.08995 * 110.87009 * 277.06861 * 12 11 10 14 14 N 1.46492 * 110.71945 * 153.86398 * 12 11 10 15 15 C 1.35317 * 125.86956 * 280.03803 * 14 12 11 16 16 C 1.35349 * 106.17446 * 179.97438 * 15 14 12 17 17 C 1.50703 * 126.75129 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47470 * 95.04643 * 17 16 15 19 19 C 1.36932 * 120.00287 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99540 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00200 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47087 * 59.99999 * 23 21 19 25 25 H 1.48498 * 109.47093 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47051 * 300.00152 * 23 21 19 27 27 N 1.33777 * 106.49799 * 0.02562 * 16 15 14 28 28 N 1.28634 * 108.88349 * 359.97438 * 27 16 15 29 29 C 1.47022 * 125.64462 * 179.97438 * 9 7 6 30 30 H 1.09003 * 109.47271 * 300.00221 * 1 2 3 31 31 H 1.09000 * 109.47104 * 60.00017 * 1 2 3 32 32 H 1.09003 * 109.47506 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47167 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47150 * 299.99954 * 3 2 1 35 35 H 1.08998 * 109.47178 * 60.00234 * 3 2 1 36 36 H 1.08994 * 109.47218 * 299.99571 * 4 2 1 37 37 H 1.09005 * 109.47157 * 60.00576 * 4 2 1 38 38 H 1.09004 * 109.46906 * 179.97438 * 4 2 1 39 39 H 1.08010 * 119.99942 * 180.02562 * 5 2 1 40 40 H 1.07998 * 120.00201 * 0.02562 * 6 5 2 41 41 H 1.08994 * 110.36585 * 322.93301 * 10 9 7 42 42 H 1.09000 * 110.36544 * 85.15109 * 10 9 7 43 43 H 1.08999 * 111.00076 * 204.91770 * 11 10 9 44 44 H 1.09000 * 110.99952 * 81.06767 * 11 10 9 45 45 H 1.07994 * 126.91360 * 359.93700 * 15 14 12 46 46 H 1.09001 * 109.47240 * 215.04786 * 17 16 15 47 47 H 1.09006 * 109.46803 * 335.04653 * 17 16 15 48 48 H 0.97002 * 119.99348 * 0.02562 * 18 17 16 49 49 H 0.96997 * 120.00045 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.88447 * 59.56285 * 29 9 7 51 51 H 1.08997 * 110.01267 * 298.46414 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0322 -0.7104 1.2304 6 6 1.1680 -1.2154 2.1061 7 6 1.6584 -1.9084 3.3075 8 8 2.8540 -2.0199 3.4997 9 7 0.7825 -2.4206 4.1947 10 6 -0.6864 -2.3590 4.0853 11 6 -1.1983 -2.4932 5.5412 12 6 -0.1875 -3.5099 6.1345 13 1 -0.4767 -4.5321 5.8910 14 7 -0.0700 -3.3379 7.5846 15 6 0.6669 -2.3933 8.2138 16 6 0.4885 -2.5975 9.5399 17 6 1.1009 -1.8035 10.6649 18 7 0.1627 -0.7643 11.0964 19 6 0.5036 0.0863 12.1139 20 1 1.4644 -0.0087 12.5980 21 6 -0.3855 1.0706 12.5230 22 7 -1.5565 1.1859 11.9333 23 14 0.0799 2.2314 13.9106 24 1 1.3026 2.9860 13.5355 25 1 -1.0335 3.1834 14.1539 26 1 0.3408 1.4481 15.1448 27 7 -0.3374 -3.6435 9.6555 28 7 -0.6501 -4.0591 8.4790 29 6 1.1339 -3.1344 5.4310 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1393 38 1 3.1300 -0.7209 -1.2495 39 1 3.0941 -0.8087 1.4016 40 1 0.1062 -1.1168 1.9352 41 1 -0.9954 -1.4039 3.6609 42 1 -1.0561 -3.1824 3.4741 43 1 -2.2124 -2.8921 5.5635 44 1 -1.1442 -1.5382 6.0638 45 1 1.2753 -1.6305 7.7511 46 1 1.3180 -2.4671 11.5019 47 1 2.0248 -1.3386 10.3206 48 1 -0.7003 -0.6794 10.6618 49 1 -2.1780 1.8735 12.2195 50 1 1.7267 -2.4871 6.0772 51 1 1.6970 -4.0369 5.1935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098644967.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:43 Heat of formation + Delta-G solvation = 96.708182 kcal Electronic energy + Delta-G solvation = -29799.187284 eV Core-core repulsion = 25736.826836 eV Total energy + Delta-G solvation = -4062.360447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.06337 -40.52317 -38.63306 -37.71883 -35.05942 -34.02499 -32.16488 -31.81024 -31.01450 -29.90501 -29.19747 -27.88995 -27.74963 -26.00395 -25.24149 -23.11177 -23.03856 -22.76948 -20.95116 -20.57306 -19.87296 -18.57020 -18.04966 -17.53725 -16.97960 -16.27241 -15.96768 -15.93341 -15.34033 -14.91722 -14.71897 -14.63632 -14.54055 -14.28237 -14.08082 -13.69841 -13.43814 -13.18590 -12.96835 -12.85776 -12.80968 -12.66717 -12.59308 -12.38214 -12.21817 -12.20019 -11.91096 -11.57374 -11.55748 -11.49336 -11.25130 -11.22250 -10.88563 -10.77940 -10.48778 -10.27843 -10.11275 -9.88547 -9.87905 -9.70557 -9.13877 -8.87671 -8.83675 -6.89997 -5.72182 -3.01669 0.96076 1.76729 2.07257 2.66556 2.89714 2.92810 3.47989 3.51884 3.53338 3.63856 3.84779 4.02811 4.23968 4.31750 4.40615 4.43043 4.49974 4.63208 4.64613 4.75011 4.78285 4.84315 4.99161 5.08281 5.11975 5.12499 5.16870 5.24716 5.28349 5.31305 5.34997 5.36243 5.47390 5.48270 5.51770 5.59095 5.63673 5.64698 5.67287 5.77599 5.82472 5.98095 6.04192 6.19132 6.40233 6.67099 6.74041 6.79559 6.99211 7.72675 7.76161 8.45133 8.81596 9.56860 10.12396 10.48598 11.50558 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011304 B = 0.002059 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.381041 B =13598.204273 C =15073.794076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.046 4.046 6 C -0.222 4.222 7 C 0.566 3.434 8 O -0.540 6.540 9 N -0.615 5.615 10 C 0.102 3.898 11 C -0.144 4.144 12 C 0.137 3.863 13 H 0.130 0.870 14 N -0.294 5.294 15 C -0.044 4.044 16 C -0.001 4.001 17 C 0.232 3.768 18 N -0.725 5.725 19 C -0.239 4.239 20 H 0.073 0.927 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.285 1.285 27 N -0.251 5.251 28 N -0.092 5.092 29 C 0.099 3.901 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.187 0.813 46 H 0.040 0.960 47 H 0.038 0.962 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.087 0.913 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.116 -6.029 -31.256 31.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.050 4.050 3 C -0.197 4.197 4 C -0.196 4.196 5 C -0.065 4.065 6 C -0.242 4.242 7 C 0.357 3.643 8 O -0.418 6.418 9 N -0.350 5.350 10 C -0.021 4.021 11 C -0.183 4.183 12 C 0.034 3.966 13 H 0.148 0.852 14 N -0.088 5.088 15 C -0.194 4.194 16 C -0.138 4.138 17 C 0.103 3.897 18 N -0.370 5.370 19 C -0.370 4.370 20 H 0.091 0.909 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.212 1.212 27 N -0.118 5.118 28 N -0.071 5.071 29 C -0.025 4.025 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.121 0.879 44 H 0.112 0.888 45 H 0.204 0.796 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.105 0.895 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.952 -7.183 -30.809 31.773 hybrid contribution 0.431 1.572 0.366 1.670 sum 3.383 -5.611 -30.444 31.141 Atomic orbital electron populations 1.22019 0.93907 1.02211 1.02464 1.19809 0.96142 0.95758 0.93254 1.21844 1.01512 0.93949 1.02426 1.21836 1.01483 1.00309 0.95974 1.23781 1.00399 0.90041 0.92307 1.22660 1.01214 1.04748 0.95587 1.18332 0.85026 0.78156 0.82751 1.90824 1.15376 1.58953 1.76630 1.48210 1.07107 1.57123 1.22608 1.22408 0.79433 1.03357 0.96889 1.23307 0.99644 1.00399 0.94922 1.22481 0.96666 1.02871 0.74625 0.85189 1.47101 1.32151 1.22054 1.07469 1.23290 1.03784 0.98703 0.93626 1.22458 0.99957 0.96959 0.94462 1.18967 0.92024 0.88814 0.89943 1.42286 1.17743 1.35011 1.41967 1.19192 1.00458 1.07980 1.09408 0.90921 1.24757 0.96391 0.99753 1.00061 1.69671 1.08060 1.36250 1.44147 0.86224 0.77052 0.80564 0.82078 1.21249 1.21751 1.21177 1.75107 1.12491 1.11177 1.13055 1.78275 1.18471 1.18041 0.92280 1.22162 0.95204 0.98528 0.86567 0.91974 0.91997 0.92095 0.92102 0.91870 0.92138 0.92309 0.91891 0.92129 0.85506 0.84874 0.89242 0.90160 0.87855 0.88762 0.79648 0.94229 0.94432 0.78127 0.93499 0.89507 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 7.13 37.15 0.26 -0.36 16 2 C -0.05 -0.25 0.99 -155.67 -0.15 -0.40 16 3 C -0.14 -0.69 8.46 37.16 0.31 -0.38 16 4 C -0.14 -0.61 8.46 37.16 0.31 -0.29 16 5 C -0.05 -0.32 8.33 -36.13 -0.30 -0.63 16 6 C -0.22 -1.65 8.43 -37.81 -0.32 -1.97 16 7 C 0.57 5.96 7.80 -12.66 -0.10 5.86 16 8 O -0.54 -7.79 16.55 5.26 0.09 -7.71 16 9 N -0.62 -5.32 3.33 -171.91 -0.57 -5.90 16 10 C 0.10 0.56 6.53 -2.53 -0.02 0.55 16 11 C -0.14 -1.05 6.77 -24.58 -0.17 -1.22 16 12 C 0.14 1.24 3.98 -66.10 -0.26 0.98 16 13 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 14 N -0.29 -4.07 3.35 -52.99 -0.18 -4.25 16 15 C -0.04 -0.68 10.44 -17.04 -0.18 -0.86 16 16 C 0.00 -0.02 6.62 -82.77 -0.55 -0.56 16 17 C 0.23 4.98 6.82 -5.19 -0.04 4.94 16 18 N -0.73 -19.21 5.59 -61.08 -0.34 -19.55 16 19 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.86 13.06 55.49 0.72 -28.13 16 23 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 N -0.25 -5.13 12.41 33.29 0.41 -4.71 16 28 N -0.09 -1.61 13.16 60.35 0.79 -0.81 16 29 C 0.10 0.92 6.49 -3.06 -0.02 0.90 16 30 H 0.06 0.27 7.50 -51.93 -0.39 -0.12 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.23 7.50 -51.93 -0.39 -0.16 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.13 1.07 7.49 -52.48 -0.39 0.67 16 40 H 0.13 0.68 4.56 -52.49 -0.24 0.44 16 41 H 0.09 0.38 7.15 -51.93 -0.37 0.01 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.19 2.43 7.05 -52.49 -0.37 2.06 16 46 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.39 10.95 7.66 -40.82 -0.31 10.64 16 49 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 50 H 0.09 0.93 6.02 -51.93 -0.31 0.62 16 51 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 416.10 15.07 6.27 6.27 Total: -1.00 -36.51 416.10 -7.52 -44.03 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.24 Total: 3.99 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.45 Total: -0.93 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: 0.84 Total: -63.36 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.09 Total: -7.71 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -36.51 -7.52 -44.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098644967.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.738 kcal (2) G-P(sol) polarization free energy of solvation -36.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds