Wall clock time and date at job start Wed Apr 1 2020 04:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47055 * 2 1 4 4 C 1.53002 * 109.47001 * 239.99914 * 2 1 3 5 5 C 1.50697 * 109.46976 * 120.00088 * 2 1 3 6 6 C 1.32990 * 120.00252 * 359.97438 * 5 2 1 7 7 C 1.47104 * 120.00240 * 180.02562 * 6 5 2 8 8 O 1.21617 * 119.99973 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00140 * 180.02562 * 7 6 5 10 10 C 1.47423 * 125.64524 * 0.03902 * 9 7 6 11 11 C 1.54912 * 104.82784 * 204.09190 * 10 9 7 12 12 C 1.55158 * 101.58549 * 322.99288 * 11 10 9 13 13 H 1.08995 * 110.87009 * 277.06861 * 12 11 10 14 14 N 1.46492 * 110.71945 * 153.86398 * 12 11 10 15 15 C 1.35317 * 125.86956 * 280.03803 * 14 12 11 16 16 C 1.35349 * 106.17446 * 179.97438 * 15 14 12 17 17 C 1.50703 * 126.75129 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47470 * 95.04643 * 17 16 15 19 19 C 1.36932 * 120.00287 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99540 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00200 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47087 * 59.99999 * 23 21 19 25 25 H 1.48498 * 109.47093 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47051 * 300.00152 * 23 21 19 27 27 N 1.33777 * 106.49799 * 0.02562 * 16 15 14 28 28 N 1.28634 * 108.88349 * 359.97438 * 27 16 15 29 29 C 1.47022 * 125.64462 * 179.97438 * 9 7 6 30 30 H 1.09003 * 109.47271 * 300.00221 * 1 2 3 31 31 H 1.09000 * 109.47104 * 60.00017 * 1 2 3 32 32 H 1.09003 * 109.47506 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47167 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47150 * 299.99954 * 3 2 1 35 35 H 1.08998 * 109.47178 * 60.00234 * 3 2 1 36 36 H 1.08994 * 109.47218 * 299.99571 * 4 2 1 37 37 H 1.09005 * 109.47157 * 60.00576 * 4 2 1 38 38 H 1.09004 * 109.46906 * 179.97438 * 4 2 1 39 39 H 1.08010 * 119.99942 * 180.02562 * 5 2 1 40 40 H 1.07998 * 120.00201 * 0.02562 * 6 5 2 41 41 H 1.08994 * 110.36585 * 322.93301 * 10 9 7 42 42 H 1.09000 * 110.36544 * 85.15109 * 10 9 7 43 43 H 1.08999 * 111.00076 * 204.91770 * 11 10 9 44 44 H 1.09000 * 110.99952 * 81.06767 * 11 10 9 45 45 H 1.07994 * 126.91360 * 359.93700 * 15 14 12 46 46 H 1.09001 * 109.47240 * 215.04786 * 17 16 15 47 47 H 1.09006 * 109.46803 * 335.04653 * 17 16 15 48 48 H 0.97002 * 119.99348 * 0.02562 * 18 17 16 49 49 H 0.96997 * 120.00045 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.88447 * 59.56285 * 29 9 7 51 51 H 1.08997 * 110.01267 * 298.46414 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0322 -0.7104 1.2304 6 6 1.1680 -1.2154 2.1061 7 6 1.6584 -1.9084 3.3075 8 8 2.8540 -2.0199 3.4997 9 7 0.7825 -2.4206 4.1947 10 6 -0.6864 -2.3590 4.0853 11 6 -1.1983 -2.4932 5.5412 12 6 -0.1875 -3.5099 6.1345 13 1 -0.4767 -4.5321 5.8910 14 7 -0.0700 -3.3379 7.5846 15 6 0.6669 -2.3933 8.2138 16 6 0.4885 -2.5975 9.5399 17 6 1.1009 -1.8035 10.6649 18 7 0.1627 -0.7643 11.0964 19 6 0.5036 0.0863 12.1139 20 1 1.4644 -0.0087 12.5980 21 6 -0.3855 1.0706 12.5230 22 7 -1.5565 1.1859 11.9333 23 14 0.0799 2.2314 13.9106 24 1 1.3026 2.9860 13.5355 25 1 -1.0335 3.1834 14.1539 26 1 0.3408 1.4481 15.1448 27 7 -0.3374 -3.6435 9.6555 28 7 -0.6501 -4.0591 8.4790 29 6 1.1339 -3.1344 5.4310 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1393 38 1 3.1300 -0.7209 -1.2495 39 1 3.0941 -0.8087 1.4016 40 1 0.1062 -1.1168 1.9352 41 1 -0.9954 -1.4039 3.6609 42 1 -1.0561 -3.1824 3.4741 43 1 -2.2124 -2.8921 5.5635 44 1 -1.1442 -1.5382 6.0638 45 1 1.2753 -1.6305 7.7511 46 1 1.3180 -2.4671 11.5019 47 1 2.0248 -1.3386 10.3206 48 1 -0.7003 -0.6794 10.6618 49 1 -2.1780 1.8735 12.2195 50 1 1.7267 -2.4871 6.0772 51 1 1.6970 -4.0369 5.1935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098644967.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:42 Heat of formation + Delta-G solvation = 72.173987 kcal Electronic energy + Delta-G solvation = -29800.251166 eV Core-core repulsion = 25736.826836 eV Total energy + Delta-G solvation = -4063.424330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.36709 -41.27355 -39.24152 -38.38266 -36.84814 -35.27237 -33.72835 -32.72521 -31.82619 -31.61821 -29.96586 -28.20348 -28.10285 -27.75267 -26.14086 -24.81548 -23.99849 -23.61233 -22.34762 -21.61254 -20.48547 -19.42006 -19.10916 -18.75225 -18.15597 -17.30599 -17.00672 -16.69261 -16.57091 -16.03664 -15.89223 -15.55500 -15.36624 -15.14240 -15.03630 -14.87227 -14.67850 -14.36135 -14.06625 -13.96157 -13.59706 -13.29753 -13.18559 -13.06881 -13.00814 -12.97545 -12.86728 -12.73093 -12.61232 -12.53479 -12.17455 -12.14015 -11.95333 -11.93299 -11.90995 -11.85022 -11.61371 -11.12232 -11.00883 -10.95783 -10.47946 -10.27994 -9.82227 -9.03428 -7.93944 -5.24601 0.33041 0.50619 1.11433 1.40756 1.49975 1.53320 1.59370 1.89435 2.21390 2.58864 2.87913 3.19048 3.32351 3.40565 3.50760 3.65077 3.80354 3.85070 3.88422 4.01004 4.07949 4.08913 4.15439 4.20972 4.25080 4.35815 4.41314 4.46216 4.54949 4.61290 4.74837 4.77030 4.79022 4.81659 4.91674 4.92347 4.97953 5.01936 5.04384 5.08044 5.13632 5.14176 5.24616 5.31015 5.42197 5.45021 5.49799 5.55925 5.59902 6.25520 6.30545 7.00209 7.32408 7.44383 8.02649 8.29498 9.29679 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011304 B = 0.002059 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.381041 B =13598.204273 C =15073.794076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.047 4.047 3 C -0.141 4.141 4 C -0.138 4.138 5 C -0.043 4.043 6 C -0.223 4.223 7 C 0.557 3.443 8 O -0.591 6.591 9 N -0.613 5.613 10 C 0.105 3.895 11 C -0.139 4.139 12 C 0.131 3.869 13 H 0.157 0.843 14 N -0.275 5.275 15 C -0.025 4.025 16 C -0.029 4.029 17 C 0.234 3.766 18 N -0.738 5.738 19 C -0.247 4.247 20 H 0.083 0.917 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.980 3.020 24 H -0.273 1.273 25 H -0.296 1.296 26 H -0.278 1.278 27 N -0.293 5.293 28 N -0.098 5.098 29 C 0.101 3.899 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.106 0.894 40 H 0.162 0.838 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.073 0.927 45 H 0.209 0.791 46 H 0.032 0.968 47 H 0.058 0.942 48 H 0.371 0.629 49 H 0.251 0.749 50 H 0.070 0.930 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 -5.871 -33.391 33.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.047 4.047 3 C -0.198 4.198 4 C -0.195 4.195 5 C -0.063 4.063 6 C -0.243 4.243 7 C 0.351 3.649 8 O -0.473 6.473 9 N -0.346 5.346 10 C -0.017 4.017 11 C -0.178 4.178 12 C 0.030 3.970 13 H 0.174 0.826 14 N -0.069 5.069 15 C -0.176 4.176 16 C -0.168 4.168 17 C 0.106 3.894 18 N -0.380 5.380 19 C -0.378 4.378 20 H 0.101 0.899 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.808 3.192 24 H -0.199 1.199 25 H -0.222 1.222 26 H -0.204 1.204 27 N -0.160 5.160 28 N -0.076 5.076 29 C -0.024 4.024 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.180 0.820 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.140 0.860 44 H 0.092 0.908 45 H 0.226 0.774 46 H 0.050 0.950 47 H 0.076 0.924 48 H 0.203 0.797 49 H 0.060 0.940 50 H 0.088 0.912 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.391 -7.070 -32.963 33.797 hybrid contribution 0.656 1.450 0.901 1.829 sum 3.047 -5.620 -32.062 32.693 Atomic orbital electron populations 1.22030 0.92723 1.02890 1.02965 1.19836 0.97069 0.95417 0.92358 1.21860 1.01270 0.93996 1.02695 1.21840 1.01233 1.00414 0.96057 1.23897 0.99539 0.89741 0.93141 1.22733 1.02544 1.04717 0.94318 1.18887 0.84552 0.77880 0.83598 1.90797 1.17564 1.61059 1.77910 1.48276 1.08475 1.56123 1.21776 1.22671 0.77120 1.05849 0.96033 1.23327 1.00140 0.98697 0.95609 1.22971 0.97343 1.05074 0.71615 0.82582 1.47426 1.30140 1.20374 1.08946 1.23474 1.02968 0.98654 0.92514 1.22216 1.01520 0.97710 0.95322 1.18969 0.91882 0.87869 0.90653 1.42469 1.17964 1.35937 1.41678 1.19656 1.00710 1.07921 1.09505 0.89892 1.25650 0.96496 1.01834 1.02932 1.69844 1.09241 1.37118 1.45976 0.85118 0.76813 0.78245 0.78996 1.19920 1.22208 1.20445 1.75041 1.13841 1.12339 1.14803 1.78153 1.18898 1.18461 0.92116 1.22085 0.95070 0.98436 0.86812 0.91914 0.91125 0.91297 0.92606 0.90620 0.92813 0.92263 0.90691 0.92637 0.87556 0.82026 0.87317 0.86946 0.85968 0.90834 0.77396 0.95013 0.92433 0.79739 0.94009 0.91208 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 7.13 71.98 0.51 -0.31 16 2 C -0.05 -0.40 0.99 -52.93 -0.05 -0.45 16 3 C -0.14 -1.22 8.46 71.98 0.61 -0.61 16 4 C -0.14 -0.98 8.46 71.98 0.61 -0.38 16 5 C -0.04 -0.58 8.33 24.52 0.20 -0.38 16 6 C -0.22 -2.95 8.43 23.43 0.20 -2.75 16 7 C 0.56 11.23 7.80 86.57 0.67 11.91 16 8 O -0.59 -17.41 16.55 -4.09 -0.07 -17.48 16 9 N -0.61 -9.39 3.33 -816.04 -2.71 -12.11 16 10 C 0.10 0.78 6.53 86.86 0.57 1.35 16 11 C -0.14 -1.65 6.77 31.99 0.22 -1.43 16 12 C 0.13 2.08 3.98 46.18 0.18 2.26 16 13 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 14 N -0.27 -7.31 3.35 -321.55 -1.08 -8.39 16 15 C -0.02 -0.75 10.44 83.49 0.87 0.12 16 16 C -0.03 -1.15 6.62 41.60 0.28 -0.88 16 17 C 0.23 10.17 6.82 85.63 0.58 10.76 16 18 N -0.74 -39.69 5.59 -347.17 -1.94 -41.63 16 19 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 20 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 21 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 22 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 23 Si 0.98 46.90 29.55 68.60 2.03 48.93 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 N -0.29 -12.15 12.41 -48.60 -0.60 -12.75 16 28 N -0.10 -3.36 13.16 37.02 0.49 -2.87 16 29 C 0.10 1.71 6.49 86.73 0.56 2.28 16 30 H 0.06 0.35 7.50 -2.39 -0.02 0.34 16 31 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.07 0.28 7.50 -2.39 -0.02 0.27 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.07 0.36 8.14 -2.38 -0.02 0.35 16 38 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.11 1.87 7.49 -2.91 -0.02 1.85 16 40 H 0.16 1.11 4.56 -2.91 -0.01 1.10 16 41 H 0.11 0.48 7.15 -2.39 -0.02 0.46 16 42 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.21 5.25 7.05 -2.91 -0.02 5.23 16 46 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 48 H 0.37 21.69 7.66 -92.71 -0.71 20.98 16 49 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 50 H 0.07 1.45 6.02 -2.39 -0.01 1.43 16 51 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -81.47 416.10 3.94 -77.54 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.22 Total: 25.44 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 7.32 Total: 4.13 kcal Atomic # 7 Polarization: -132.99 SS G_CDS: -5.57 Total: -138.56 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.07 Total: -17.48 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -81.47 3.94 -77.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098644967.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.712 kcal (2) G-P(sol) polarization free energy of solvation -81.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds