Wall clock time and date at job start Wed Apr 1 2020 05:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00299 * 2 1 4 4 C 1.53004 * 109.46985 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.47315 * 240.00529 * 3 2 1 6 6 C 1.53007 * 109.47019 * 120.00144 * 3 2 1 7 7 C 1.50695 * 109.47019 * 179.97438 * 6 3 2 8 8 O 1.21283 * 120.00238 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99686 * 179.97438 * 7 6 3 10 10 C 1.47423 * 125.64857 * 0.03317 * 9 7 6 11 11 C 1.54914 * 104.83153 * 155.83117 * 10 9 7 12 12 C 1.55161 * 101.58246 * 37.00787 * 11 10 9 13 13 H 1.08995 * 110.72070 * 83.03606 * 12 11 10 14 14 N 1.46492 * 110.72048 * 206.13686 * 12 11 10 15 15 C 1.35317 * 125.86956 * 33.55812 * 14 12 11 16 16 C 1.35349 * 106.17446 * 179.97438 * 15 14 12 17 17 C 1.50703 * 126.75129 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47470 * 95.04643 * 17 16 15 19 19 C 1.36932 * 120.00287 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99540 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00200 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47087 * 59.99999 * 23 21 19 25 25 H 1.48498 * 109.47093 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47051 * 300.00152 * 23 21 19 27 27 N 1.33777 * 106.49799 * 0.02562 * 16 15 14 28 28 N 1.28634 * 108.88349 * 359.97438 * 27 16 15 29 29 C 1.47027 * 125.64625 * 179.97438 * 9 7 6 30 30 H 1.07999 * 120.00822 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.99797 * 359.97438 * 1 2 3 32 32 H 1.08001 * 119.99326 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47052 * 179.97438 * 4 3 2 34 34 H 1.08993 * 109.46925 * 299.99526 * 4 3 2 35 35 H 1.09002 * 109.47490 * 59.99859 * 4 3 2 36 36 H 1.08997 * 109.46603 * 299.99643 * 5 3 2 37 37 H 1.08993 * 109.47340 * 60.00017 * 5 3 2 38 38 H 1.09004 * 109.46692 * 180.02562 * 5 3 2 39 39 H 1.08999 * 109.46681 * 60.00122 * 6 3 2 40 40 H 1.08999 * 109.47209 * 300.00595 * 6 3 2 41 41 H 1.08993 * 110.37184 * 36.99021 * 10 9 7 42 42 H 1.09004 * 110.36546 * 274.66585 * 10 9 7 43 43 H 1.08999 * 111.00284 * 278.93101 * 11 10 9 44 44 H 1.08999 * 111.00108 * 155.07873 * 11 10 9 45 45 H 1.07994 * 126.91360 * 359.93700 * 15 14 12 46 46 H 1.09001 * 109.47240 * 215.04786 * 17 16 15 47 47 H 1.09006 * 109.46803 * 335.04653 * 17 16 15 48 48 H 0.97002 * 119.99348 * 0.02562 * 18 17 16 49 49 H 0.96997 * 120.00045 * 179.97438 * 22 21 19 50 50 H 1.08994 * 109.87987 * 61.68287 * 29 9 7 51 51 H 1.09002 * 109.88123 * 300.51640 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9432 1.3860 1.2493 7 6 3.6973 2.6907 1.2490 8 8 3.5457 3.4786 0.3394 9 7 4.5393 2.9826 2.2600 10 6 4.8166 2.1205 3.4233 11 6 6.2173 2.5602 3.9179 12 6 6.1647 4.0926 3.6801 13 1 5.6661 4.5946 4.5092 14 7 7.5121 4.6332 3.4841 15 6 8.5433 3.9942 2.8846 16 6 9.5895 4.8522 2.9188 17 6 10.9741 4.6079 2.3763 18 7 11.0719 5.1573 1.0217 19 6 12.2453 5.0534 0.3237 20 1 13.0987 4.5660 0.7717 21 6 12.3381 5.5743 -0.9596 22 7 11.2982 6.1686 -1.5053 23 14 13.9387 5.4319 -1.9120 24 1 14.2886 3.9986 -2.0806 25 1 13.7780 6.0620 -3.2471 26 1 15.0218 6.1214 -1.1658 27 7 9.1531 5.9593 3.5299 28 7 7.9184 5.7977 3.8523 29 6 5.3344 4.2130 2.3848 30 1 -0.5401 -0.9352 -0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 1.6143 3.4119 0.0011 34 1 0.4424 2.4105 -0.8891 35 1 0.4429 2.4101 0.8908 36 1 3.6513 0.5576 -1.2492 37 1 2.3164 1.3285 -2.1392 38 1 3.4884 2.3299 -1.2489 39 1 3.6515 0.5574 1.2492 40 1 2.3166 1.3282 2.1393 41 1 4.8318 1.0726 3.1239 42 1 4.0713 2.2827 4.2019 43 1 7.0047 2.0990 3.3216 44 1 6.3470 2.3332 4.9761 45 1 8.5337 2.9995 2.4642 46 1 11.7075 5.0945 3.0194 47 1 11.1696 3.5359 2.3486 48 1 10.3055 5.5953 0.6196 49 1 11.3631 6.5330 -2.4019 50 1 4.6730 5.0770 2.4476 51 1 5.9988 4.3137 1.5266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098679279.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:36 Heat of formation + Delta-G solvation = 109.788727 kcal Electronic energy + Delta-G solvation = -30392.023419 eV Core-core repulsion = 26330.230187 eV Total energy + Delta-G solvation = -4061.793232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.07941 -40.81330 -38.83108 -37.04604 -35.07188 -34.06108 -31.99059 -31.69730 -31.01463 -30.00351 -29.59270 -28.04218 -27.51895 -25.87424 -24.51774 -23.21484 -22.73839 -22.64594 -20.89362 -20.59932 -19.76396 -18.47275 -17.90901 -17.49166 -17.02461 -16.49043 -16.02708 -15.76848 -15.68469 -14.92073 -14.74457 -14.63418 -14.43648 -14.22795 -14.01068 -13.66239 -13.33491 -13.27792 -13.18503 -12.94598 -12.74790 -12.56751 -12.31905 -12.26491 -12.02579 -11.96724 -11.62340 -11.52675 -11.42382 -11.26909 -11.22528 -10.94883 -10.88462 -10.77904 -10.46787 -10.11702 -9.95994 -9.81513 -9.74260 -9.69932 -9.11458 -8.89068 -8.84387 -6.90125 -5.71344 -3.01515 1.71900 1.88966 2.11688 2.26519 2.66193 2.88502 3.47848 3.52000 3.53576 3.64941 3.76273 4.18535 4.23413 4.36031 4.39132 4.50532 4.58384 4.64678 4.66967 4.74474 4.86846 4.90455 5.00359 5.08611 5.14209 5.17096 5.25494 5.27081 5.32831 5.41773 5.45594 5.49239 5.56925 5.62908 5.65917 5.72526 5.75626 5.82871 5.86087 6.17579 6.18585 6.19012 6.31446 6.38372 6.44784 6.64004 6.71944 6.77768 7.01844 7.72304 7.81153 8.45533 8.80057 9.57123 10.12687 10.48462 11.51209 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010800 B = 0.002315 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.917200 B =12092.221234 C =13931.072335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C -0.021 4.021 4 C -0.156 4.156 5 C -0.152 4.152 6 C -0.122 4.122 7 C 0.531 3.469 8 O -0.518 6.518 9 N -0.621 5.621 10 C 0.102 3.898 11 C -0.143 4.143 12 C 0.138 3.862 13 H 0.130 0.870 14 N -0.294 5.294 15 C -0.042 4.042 16 C -0.002 4.002 17 C 0.232 3.768 18 N -0.726 5.726 19 C -0.242 4.242 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 N -0.250 5.250 28 N -0.093 5.093 29 C 0.099 3.901 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.186 0.814 46 H 0.039 0.961 47 H 0.037 0.963 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.086 0.914 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.687 -16.427 11.929 31.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.163 4.163 3 C -0.021 4.021 4 C -0.213 4.213 5 C -0.209 4.209 6 C -0.162 4.162 7 C 0.321 3.679 8 O -0.394 6.394 9 N -0.357 5.357 10 C -0.022 4.022 11 C -0.182 4.182 12 C 0.034 3.966 13 H 0.148 0.852 14 N -0.089 5.089 15 C -0.192 4.192 16 C -0.139 4.139 17 C 0.103 3.897 18 N -0.370 5.370 19 C -0.373 4.373 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.741 3.259 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 N -0.118 5.118 28 N -0.071 5.071 29 C -0.025 4.025 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.203 0.797 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.219 0.781 49 H 0.066 0.934 50 H 0.104 0.896 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.055 -14.712 12.001 30.645 hybrid contribution 0.742 -1.086 -1.171 1.761 sum -23.313 -15.799 10.830 30.173 Atomic orbital electron populations 1.24032 0.96170 1.02124 1.00885 1.22927 0.95925 0.97498 0.99976 1.19399 0.94929 0.93430 0.94360 1.22187 0.98561 0.99557 1.01016 1.22074 0.99263 1.03736 0.95804 1.21697 0.99065 0.95037 1.00366 1.20424 0.78505 0.88818 0.80163 1.90652 1.63701 1.50667 1.34389 1.48465 1.44272 1.19750 1.23232 1.22367 0.95710 0.95894 0.88188 1.23292 0.98286 0.92440 1.04204 1.22491 0.79123 0.95560 0.99417 0.85240 1.47108 1.10268 1.11985 1.39489 1.23261 0.87874 1.02511 1.05576 1.22481 0.99036 0.90532 1.01878 1.18955 0.86041 0.96958 0.87719 1.42296 1.14085 1.69534 1.11128 1.19171 0.90542 1.31464 0.96073 0.90937 1.24770 0.97594 1.01012 0.97521 1.69672 1.29157 1.43238 1.15872 0.86232 0.83025 0.77496 0.79194 1.21253 1.21730 1.21173 1.75115 1.01300 1.22173 1.13198 1.78292 1.08139 1.00407 1.20275 1.22221 0.94827 0.88383 0.97117 0.88680 0.87798 0.87431 0.89599 0.92592 0.93230 0.93203 0.92754 0.89440 0.88660 0.88758 0.89263 0.90204 0.88624 0.87914 0.79663 0.94290 0.94519 0.78092 0.93424 0.89552 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.21 13.70 29.01 0.40 -0.81 16 2 C -0.15 -0.95 8.76 -36.03 -0.32 -1.27 16 3 C -0.02 -0.16 0.74 -155.66 -0.11 -0.28 16 4 C -0.16 -1.34 6.83 37.16 0.25 -1.09 16 5 C -0.15 -1.45 8.16 37.16 0.30 -1.15 16 6 C -0.12 -0.79 3.76 -27.88 -0.10 -0.90 16 7 C 0.53 5.10 7.26 -10.99 -0.08 5.02 16 8 O -0.52 -6.99 11.67 5.55 0.06 -6.92 16 9 N -0.62 -4.98 3.33 -170.52 -0.57 -5.55 16 10 C 0.10 0.42 6.69 -2.53 -0.02 0.40 16 11 C -0.14 -0.73 6.48 -24.58 -0.16 -0.89 16 12 C 0.14 1.17 3.98 -66.10 -0.26 0.90 16 13 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 14 N -0.29 -3.95 3.28 -52.99 -0.17 -4.13 16 15 C -0.04 -0.62 10.59 -17.04 -0.18 -0.80 16 16 C 0.00 -0.03 6.62 -82.77 -0.55 -0.58 16 17 C 0.23 4.89 6.82 -5.19 -0.04 4.85 16 18 N -0.73 -19.19 5.59 -61.08 -0.34 -19.53 16 19 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 20 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -29.14 13.06 55.49 0.72 -28.42 16 23 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 27 N -0.25 -5.08 12.41 33.29 0.41 -4.66 16 28 N -0.09 -1.61 13.16 60.35 0.79 -0.82 16 29 C 0.10 0.98 6.62 -3.06 -0.02 0.96 16 30 H 0.09 0.48 8.06 -52.49 -0.42 0.06 16 31 H 0.10 0.64 5.69 -52.48 -0.30 0.34 16 32 H 0.11 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.09 0.94 5.51 -51.93 -0.29 0.66 16 34 H 0.06 0.46 7.50 -51.93 -0.39 0.08 16 35 H 0.05 0.36 7.50 -51.93 -0.39 -0.03 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.09 1.06 5.51 -51.93 -0.29 0.78 16 39 H 0.10 0.47 7.85 -51.93 -0.41 0.07 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.22 7.48 -51.93 -0.39 -0.17 16 42 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.10 0.55 6.39 -51.93 -0.33 0.21 16 44 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.19 2.14 7.01 -52.49 -0.37 1.77 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.39 11.06 7.66 -40.82 -0.31 10.75 16 49 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 50 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 51 H 0.08 1.11 8.03 -51.93 -0.42 0.70 16 LS Contribution 407.52 15.07 6.14 6.14 Total: -1.00 -36.44 407.52 -7.17 -43.61 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -8.07 Total: 5.65 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.13 Total: -3.11 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: 0.85 Total: -63.10 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: 0.06 Total: -6.92 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.44 -7.17 -43.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098679279.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.398 kcal (2) G-P(sol) polarization free energy of solvation -36.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds