Wall clock time and date at job start Wed Apr 1 2020 05:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00299 * 2 1 4 4 C 1.53004 * 109.46985 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.47315 * 240.00529 * 3 2 1 6 6 C 1.53007 * 109.47019 * 120.00144 * 3 2 1 7 7 C 1.50695 * 109.47019 * 179.97438 * 6 3 2 8 8 O 1.21283 * 120.00238 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99686 * 179.97438 * 7 6 3 10 10 C 1.47423 * 125.64857 * 0.03317 * 9 7 6 11 11 C 1.54914 * 104.83153 * 155.83117 * 10 9 7 12 12 C 1.55161 * 101.58246 * 37.00787 * 11 10 9 13 13 H 1.08995 * 110.72070 * 83.03606 * 12 11 10 14 14 N 1.46492 * 110.72048 * 206.13686 * 12 11 10 15 15 C 1.35317 * 125.86956 * 33.55812 * 14 12 11 16 16 C 1.35349 * 106.17446 * 179.97438 * 15 14 12 17 17 C 1.50703 * 126.75129 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47470 * 95.04643 * 17 16 15 19 19 C 1.36932 * 120.00287 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99540 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00200 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47087 * 59.99999 * 23 21 19 25 25 H 1.48498 * 109.47093 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47051 * 300.00152 * 23 21 19 27 27 N 1.33777 * 106.49799 * 0.02562 * 16 15 14 28 28 N 1.28634 * 108.88349 * 359.97438 * 27 16 15 29 29 C 1.47027 * 125.64625 * 179.97438 * 9 7 6 30 30 H 1.07999 * 120.00822 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.99797 * 359.97438 * 1 2 3 32 32 H 1.08001 * 119.99326 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47052 * 179.97438 * 4 3 2 34 34 H 1.08993 * 109.46925 * 299.99526 * 4 3 2 35 35 H 1.09002 * 109.47490 * 59.99859 * 4 3 2 36 36 H 1.08997 * 109.46603 * 299.99643 * 5 3 2 37 37 H 1.08993 * 109.47340 * 60.00017 * 5 3 2 38 38 H 1.09004 * 109.46692 * 180.02562 * 5 3 2 39 39 H 1.08999 * 109.46681 * 60.00122 * 6 3 2 40 40 H 1.08999 * 109.47209 * 300.00595 * 6 3 2 41 41 H 1.08993 * 110.37184 * 36.99021 * 10 9 7 42 42 H 1.09004 * 110.36546 * 274.66585 * 10 9 7 43 43 H 1.08999 * 111.00284 * 278.93101 * 11 10 9 44 44 H 1.08999 * 111.00108 * 155.07873 * 11 10 9 45 45 H 1.07994 * 126.91360 * 359.93700 * 15 14 12 46 46 H 1.09001 * 109.47240 * 215.04786 * 17 16 15 47 47 H 1.09006 * 109.46803 * 335.04653 * 17 16 15 48 48 H 0.97002 * 119.99348 * 0.02562 * 18 17 16 49 49 H 0.96997 * 120.00045 * 179.97438 * 22 21 19 50 50 H 1.08994 * 109.87987 * 61.68287 * 29 9 7 51 51 H 1.09002 * 109.88123 * 300.51640 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9432 1.3860 1.2493 7 6 3.6973 2.6907 1.2490 8 8 3.5457 3.4786 0.3394 9 7 4.5393 2.9826 2.2600 10 6 4.8166 2.1205 3.4233 11 6 6.2173 2.5602 3.9179 12 6 6.1647 4.0926 3.6801 13 1 5.6661 4.5946 4.5092 14 7 7.5121 4.6332 3.4841 15 6 8.5433 3.9942 2.8846 16 6 9.5895 4.8522 2.9188 17 6 10.9741 4.6079 2.3763 18 7 11.0719 5.1573 1.0217 19 6 12.2453 5.0534 0.3237 20 1 13.0987 4.5660 0.7717 21 6 12.3381 5.5743 -0.9596 22 7 11.2982 6.1686 -1.5053 23 14 13.9387 5.4319 -1.9120 24 1 14.2886 3.9986 -2.0806 25 1 13.7780 6.0620 -3.2471 26 1 15.0218 6.1214 -1.1658 27 7 9.1531 5.9593 3.5299 28 7 7.9184 5.7977 3.8523 29 6 5.3344 4.2130 2.3848 30 1 -0.5401 -0.9352 -0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 1.6143 3.4119 0.0011 34 1 0.4424 2.4105 -0.8891 35 1 0.4429 2.4101 0.8908 36 1 3.6513 0.5576 -1.2492 37 1 2.3164 1.3285 -2.1392 38 1 3.4884 2.3299 -1.2489 39 1 3.6515 0.5574 1.2492 40 1 2.3166 1.3282 2.1393 41 1 4.8318 1.0726 3.1239 42 1 4.0713 2.2827 4.2019 43 1 7.0047 2.0990 3.3216 44 1 6.3470 2.3332 4.9761 45 1 8.5337 2.9995 2.4642 46 1 11.7075 5.0945 3.0194 47 1 11.1696 3.5359 2.3486 48 1 10.3055 5.5953 0.6196 49 1 11.3631 6.5330 -2.4019 50 1 4.6730 5.0770 2.4476 51 1 5.9988 4.3137 1.5266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098679279.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:35 Heat of formation + Delta-G solvation = 84.465279 kcal Electronic energy + Delta-G solvation = -30393.121526 eV Core-core repulsion = 26330.230187 eV Total energy + Delta-G solvation = -4062.891340 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.33451 -41.49906 -39.49647 -37.74008 -36.82844 -35.25749 -33.72626 -32.32906 -31.82938 -31.61918 -30.30892 -28.73830 -28.21980 -27.65762 -25.32263 -24.83628 -23.88730 -23.23920 -22.22539 -21.59149 -20.37376 -19.40665 -19.02351 -18.60127 -18.06637 -17.48596 -16.91690 -16.61777 -16.55912 -16.28817 -15.99864 -15.57780 -15.41504 -15.13168 -15.09308 -14.88463 -14.61921 -14.29525 -13.97327 -13.92060 -13.70362 -13.52519 -13.25089 -13.04124 -12.97579 -12.87615 -12.72833 -12.67349 -12.59914 -12.28528 -12.14371 -12.05808 -12.02509 -11.88940 -11.83604 -11.78224 -11.52385 -11.10245 -10.95608 -10.57444 -10.25499 -10.22568 -9.77820 -9.03709 -7.94145 -5.25178 0.52291 1.17298 1.42188 1.45139 1.49786 1.52945 1.58278 1.59105 1.97576 2.58758 3.04455 3.13564 3.35641 3.42628 3.59297 3.68907 3.81534 3.86177 3.92189 3.96752 4.09914 4.11896 4.20314 4.25204 4.36991 4.37221 4.46705 4.51214 4.56955 4.61415 4.68754 4.75246 4.81296 4.82665 4.85373 4.97177 4.98313 5.03429 5.06862 5.10537 5.13495 5.18027 5.20645 5.43006 5.49587 5.54781 5.64060 5.79742 5.97496 6.24755 6.40117 7.13628 7.31292 7.47336 8.02945 8.28491 9.29654 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010800 B = 0.002315 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.917200 B =12092.221234 C =13931.072335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C -0.021 4.021 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.113 4.113 7 C 0.522 3.478 8 O -0.569 6.569 9 N -0.618 5.618 10 C 0.100 3.900 11 C -0.133 4.133 12 C 0.131 3.869 13 H 0.152 0.848 14 N -0.277 5.277 15 C -0.016 4.016 16 C -0.035 4.035 17 C 0.235 3.765 18 N -0.740 5.740 19 C -0.243 4.243 20 H 0.087 0.913 21 C -0.081 4.081 22 N -0.975 5.975 23 Si 0.981 3.019 24 H -0.270 1.270 25 H -0.299 1.299 26 H -0.277 1.277 27 N -0.296 5.296 28 N -0.108 5.108 29 C 0.102 3.898 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.133 0.867 45 H 0.221 0.779 46 H 0.031 0.969 47 H 0.065 0.935 48 H 0.369 0.631 49 H 0.250 0.750 50 H 0.074 0.926 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.477 -20.224 14.034 34.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.165 4.165 3 C -0.022 4.022 4 C -0.210 4.210 5 C -0.207 4.207 6 C -0.152 4.152 7 C 0.313 3.687 8 O -0.448 6.448 9 N -0.354 5.354 10 C -0.021 4.021 11 C -0.172 4.172 12 C 0.029 3.971 13 H 0.170 0.830 14 N -0.071 5.071 15 C -0.168 4.168 16 C -0.174 4.174 17 C 0.107 3.893 18 N -0.383 5.383 19 C -0.375 4.375 20 H 0.105 0.895 21 C -0.273 4.273 22 N -0.626 5.626 23 Si 0.809 3.191 24 H -0.196 1.196 25 H -0.226 1.226 26 H -0.203 1.203 27 N -0.163 5.163 28 N -0.087 5.087 29 C -0.023 4.023 30 H 0.127 0.873 31 H 0.117 0.883 32 H 0.141 0.859 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.127 0.873 43 H 0.111 0.889 44 H 0.151 0.849 45 H 0.238 0.762 46 H 0.049 0.951 47 H 0.082 0.918 48 H 0.200 0.800 49 H 0.059 0.941 50 H 0.093 0.907 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -24.847 -18.552 14.199 34.105 hybrid contribution 0.856 0.077 -1.768 1.966 sum -23.991 -18.475 12.431 32.733 Atomic orbital electron populations 1.24160 0.96196 1.02635 1.00127 1.22894 0.95973 0.97055 1.00613 1.19377 0.94739 0.93884 0.94175 1.22121 0.98600 0.98761 1.01476 1.22020 0.99486 1.02330 0.96909 1.21737 0.99284 0.93584 1.00623 1.21138 0.78476 0.89474 0.79606 1.90654 1.65345 1.52388 1.36432 1.48555 1.43245 1.19440 1.24123 1.22740 0.95655 0.96517 0.87194 1.23402 0.98930 0.88697 1.06175 1.23005 0.76471 0.98564 0.99021 0.83019 1.47458 1.11596 1.10645 1.37364 1.23608 0.86742 1.02976 1.03461 1.22297 0.99349 0.91728 1.03981 1.18998 0.87594 0.97762 0.84937 1.42530 1.12971 1.69718 1.13080 1.19682 0.91481 1.30083 0.96226 0.89513 1.25697 1.01125 1.01535 0.98907 1.69866 1.31592 1.45186 1.15948 0.85100 0.78855 0.78067 0.77059 1.19588 1.22581 1.20302 1.75038 1.02796 1.23606 1.14874 1.78171 1.07300 1.02047 1.21146 1.21990 0.94456 0.89528 0.96359 0.87283 0.88263 0.85894 0.92463 0.93033 0.91830 0.92259 0.93303 0.92582 0.86204 0.86003 0.86461 0.87311 0.88872 0.84881 0.76225 0.95116 0.91754 0.80048 0.94149 0.90738 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 13.70 67.78 0.93 -1.00 16 2 C -0.15 -1.54 8.76 25.64 0.22 -1.32 16 3 C -0.02 -0.30 0.74 -52.93 -0.04 -0.34 16 4 C -0.15 -2.60 6.83 71.98 0.49 -2.11 16 5 C -0.15 -2.89 8.16 71.98 0.59 -2.30 16 6 C -0.11 -1.15 3.76 29.85 0.11 -1.04 16 7 C 0.52 9.58 7.26 87.66 0.64 10.22 16 8 O -0.57 -16.26 11.67 -3.04 -0.04 -16.29 16 9 N -0.62 -8.77 3.33 -811.78 -2.70 -11.48 16 10 C 0.10 0.35 6.69 86.86 0.58 0.93 16 11 C -0.13 -0.77 6.48 31.99 0.21 -0.56 16 12 C 0.13 1.93 3.98 46.18 0.18 2.12 16 13 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 14 N -0.28 -7.15 3.28 -321.56 -1.05 -8.20 16 15 C -0.02 -0.46 10.59 83.49 0.88 0.42 16 16 C -0.04 -1.34 6.62 41.60 0.28 -1.06 16 17 C 0.23 9.89 6.82 85.63 0.58 10.47 16 18 N -0.74 -39.87 5.59 -347.17 -1.94 -41.82 16 19 C -0.24 -13.92 9.99 84.03 0.84 -13.08 16 20 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 21 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 22 N -0.98 -62.88 13.06 21.65 0.28 -62.60 16 23 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 27 N -0.30 -12.32 12.41 -48.60 -0.60 -12.92 16 28 N -0.11 -3.79 13.16 37.02 0.49 -3.30 16 29 C 0.10 2.02 6.62 86.73 0.57 2.59 16 30 H 0.11 0.78 8.06 -2.91 -0.02 0.76 16 31 H 0.10 1.06 5.69 -2.91 -0.02 1.04 16 32 H 0.12 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.06 1.34 5.51 -2.39 -0.01 1.33 16 34 H 0.05 0.88 7.50 -2.39 -0.02 0.86 16 35 H 0.06 0.86 7.50 -2.39 -0.02 0.84 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 1.46 5.51 -2.39 -0.01 1.45 16 39 H 0.12 0.67 7.85 -2.39 -0.02 0.65 16 40 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.12 -0.13 7.48 -2.39 -0.02 -0.15 16 42 H 0.11 -0.13 8.14 -2.38 -0.02 -0.15 16 43 H 0.09 0.65 6.39 -2.39 -0.02 0.64 16 44 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.22 4.46 7.01 -2.91 -0.02 4.44 16 46 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 48 H 0.37 21.97 7.66 -92.71 -0.71 21.26 16 49 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 50 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.04 1.23 8.03 -2.39 -0.02 1.21 16 Total: -1.00 -85.60 407.52 4.23 -81.37 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.23 Total: 26.39 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 7.54 Total: -0.41 kcal Atomic # 7 Polarization: -134.79 SS G_CDS: -5.53 Total: -140.32 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.04 Total: -16.29 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -85.60 4.23 -81.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098679279.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.837 kcal (2) G-P(sol) polarization free energy of solvation -85.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds