Wall clock time and date at job start Wed Apr 1 2020 04:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47138 * 2 1 4 4 C 1.50698 * 109.46825 * 119.99543 * 2 1 3 5 5 O 1.21284 * 120.00273 * 354.18467 * 4 2 1 6 6 N 1.34779 * 120.00041 * 174.18336 * 4 2 1 7 7 C 1.47022 * 125.64619 * 355.12051 * 6 4 2 8 8 C 1.54329 * 107.27466 * 178.89718 * 7 6 4 9 9 C 1.55162 * 102.93548 * 337.80448 * 8 7 6 10 10 H 1.08999 * 111.00202 * 277.42782 * 9 8 7 11 11 N 1.46503 * 111.00263 * 153.61496 * 9 8 7 12 12 C 1.35310 * 125.86883 * 329.58148 * 11 9 8 13 13 C 1.35350 * 106.17643 * 179.97438 * 12 11 9 14 14 C 1.50700 * 126.75235 * 179.97438 * 13 12 11 15 15 N 1.46506 * 109.47125 * 94.99837 * 14 13 12 16 16 C 1.36930 * 119.99932 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00379 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00044 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99648 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00361 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47022 * 90.00111 * 20 18 16 22 22 H 1.48498 * 109.47007 * 210.00291 * 20 18 16 23 23 H 1.48502 * 109.46669 * 330.00393 * 20 18 16 24 24 N 1.33770 * 106.49734 * 0.02562 * 13 12 11 25 25 N 1.28635 * 108.88306 * 359.73404 * 24 13 12 26 26 C 1.47421 * 125.65196 * 175.06315 * 6 4 2 27 27 C 1.53000 * 109.47094 * 239.99559 * 2 1 3 28 28 C 1.53000 * 117.49506 * 128.62795 * 27 2 1 29 29 C 1.52997 * 117.50078 * 60.00362 * 27 2 1 30 30 H 1.08997 * 109.46913 * 294.57386 * 1 2 3 31 31 H 1.09007 * 109.46849 * 54.57173 * 1 2 3 32 32 H 1.08997 * 109.46937 * 174.56684 * 1 2 3 33 33 H 1.08998 * 109.46994 * 173.83393 * 3 2 1 34 34 H 1.09009 * 109.46802 * 293.82425 * 3 2 1 35 35 H 1.08991 * 109.47487 * 53.82466 * 3 2 1 36 36 H 1.08993 * 109.88699 * 59.47468 * 7 6 4 37 37 H 1.09005 * 109.88237 * 298.30689 * 7 6 4 38 38 H 1.09000 * 110.72009 * 219.44606 * 8 7 6 39 39 H 1.08992 * 110.72349 * 96.16516 * 8 7 6 40 40 H 1.08010 * 126.91104 * 359.97438 * 12 11 9 41 41 H 1.09000 * 109.47403 * 215.00115 * 14 13 12 42 42 H 1.09003 * 109.46839 * 335.00338 * 14 13 12 43 43 H 0.96995 * 119.99693 * 0.02562 * 15 14 13 44 44 H 0.97002 * 119.99524 * 179.97438 * 19 18 16 45 45 H 1.09002 * 110.36514 * 85.33408 * 26 6 4 46 46 H 1.09000 * 110.37028 * 323.01542 * 26 6 4 47 47 H 1.08999 * 115.54629 * 274.32899 * 27 2 1 48 48 H 1.08999 * 117.50265 * 359.97438 * 28 27 2 49 49 H 1.09004 * 117.49739 * 145.02477 * 28 27 2 50 50 H 1.08998 * 117.49727 * 214.97942 * 29 27 2 51 51 H 1.09008 * 117.49412 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.2492 -1.0781 2.0806 6 7 3.3517 -0.9369 1.3865 7 6 4.3955 -0.6379 0.3952 8 6 5.7488 -1.0386 1.0195 9 6 5.4496 -1.0144 2.5419 10 1 5.5204 -0.0014 2.9379 11 7 6.3423 -1.9221 3.2668 12 6 6.8757 -3.0663 2.7797 13 6 7.6316 -3.5840 3.7759 14 6 8.4348 -4.8583 3.7293 15 7 9.8202 -4.5493 3.3666 16 6 10.7417 -5.5568 3.2626 17 1 10.4471 -6.5793 3.4475 18 6 12.0545 -5.2641 2.9195 19 7 12.4136 -4.0179 2.6946 20 14 13.3114 -6.6386 2.7768 21 1 13.3244 -7.1549 1.3845 22 1 14.6575 -6.1163 3.1237 23 1 12.9513 -7.7372 3.7088 24 7 7.5246 -2.7426 4.8104 25 7 6.7580 -1.7657 4.4749 26 6 3.9875 -1.5245 2.5797 27 6 2.0400 -0.7213 -1.2492 28 6 3.0743 0.0050 -2.1115 29 6 1.6358 -0.1497 -2.6096 30 1 -0.3633 0.4274 0.9346 31 1 -0.3633 0.5958 -0.8374 32 1 -0.3633 -1.0230 -0.0973 33 1 3.1244 1.4445 0.1104 34 1 1.7697 1.9234 -0.9402 35 1 1.5893 1.9873 0.8295 36 1 4.3942 0.4275 0.1653 37 1 4.2208 -1.2153 -0.5127 38 1 6.5205 -0.3115 0.7666 39 1 6.0400 -2.0389 0.6996 40 1 6.7279 -3.4827 1.7941 41 1 8.4136 -5.3371 4.7083 42 1 8.0061 -5.5309 2.9864 43 1 10.0849 -3.6310 3.2010 44 1 13.3311 -3.8133 2.4552 45 1 3.9639 -2.6129 2.5250 46 1 3.4883 -1.1786 3.4848 47 1 2.1267 -1.8045 -1.1640 48 1 3.3910 0.9969 -1.7892 49 1 3.8417 -0.6004 -2.5940 50 1 1.4570 -0.8568 -3.4195 51 1 1.0062 0.7401 -2.6146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098706212.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:39 Heat of formation + Delta-G solvation = 117.346036 kcal Electronic energy + Delta-G solvation = -30808.832750 eV Core-core repulsion = 26747.367227 eV Total energy + Delta-G solvation = -4061.465523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.07197 -41.27148 -38.72258 -37.92612 -35.07694 -34.04148 -33.37253 -31.95702 -30.91873 -29.98594 -29.41669 -27.86922 -25.94982 -25.64555 -23.93364 -23.35994 -22.83314 -22.57961 -21.09332 -20.87750 -20.59351 -19.12143 -17.80721 -17.59023 -17.07143 -16.41130 -16.23205 -16.01801 -15.49511 -15.32409 -14.81014 -14.50711 -14.46637 -14.07338 -13.80095 -13.68327 -13.48964 -13.25030 -13.18055 -12.93365 -12.75414 -12.72347 -12.59944 -12.26079 -12.15267 -12.03406 -11.93151 -11.69212 -11.38641 -11.34173 -11.24099 -11.07937 -10.90799 -10.80784 -10.54454 -10.44528 -10.10836 -10.06196 -9.87807 -9.72347 -9.17242 -8.89532 -8.85644 -6.92101 -5.74321 -3.03861 1.74033 2.02497 2.17591 2.66557 2.88672 3.16618 3.45292 3.50708 3.52824 3.64229 3.83933 3.99367 4.10311 4.20546 4.29490 4.35275 4.41043 4.51800 4.55723 4.62479 4.64699 4.75767 4.85185 5.00122 5.05002 5.08883 5.14365 5.19653 5.24815 5.25371 5.30105 5.33363 5.34451 5.38314 5.46781 5.49702 5.57874 5.59943 5.62241 5.65366 5.71846 5.82119 5.85623 6.16869 6.38342 6.64368 6.72294 6.77796 6.95844 7.69414 7.71123 8.42969 8.80786 9.54846 10.10314 10.46437 11.48435 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.002054 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.114588 B =13631.902324 C =14454.038424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.044 4.044 3 C -0.151 4.151 4 C 0.544 3.456 5 O -0.531 6.531 6 N -0.614 5.614 7 C 0.097 3.903 8 C -0.145 4.145 9 C 0.136 3.864 10 H 0.128 0.872 11 N -0.292 5.292 12 C -0.043 4.043 13 C -0.002 4.002 14 C 0.232 3.768 15 N -0.726 5.726 16 C -0.239 4.239 17 H 0.073 0.927 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.909 3.091 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 N -0.251 5.251 25 N -0.092 5.092 26 C 0.101 3.899 27 C -0.152 4.152 28 C -0.183 4.183 29 C -0.169 4.169 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.187 0.813 41 H 0.040 0.960 42 H 0.038 0.962 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.108 0.892 48 H 0.104 0.896 49 H 0.099 0.901 50 H 0.096 0.904 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.258 12.974 -13.330 31.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.047 4.047 3 C -0.208 4.208 4 C 0.333 3.667 5 O -0.407 6.407 6 N -0.349 5.349 7 C -0.026 4.026 8 C -0.184 4.184 9 C 0.032 3.968 10 H 0.146 0.854 11 N -0.086 5.086 12 C -0.193 4.193 13 C -0.139 4.139 14 C 0.103 3.897 15 N -0.370 5.370 16 C -0.370 4.370 17 H 0.091 0.909 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.207 1.207 24 N -0.118 5.118 25 N -0.070 5.070 26 C -0.023 4.023 27 C -0.170 4.170 28 C -0.220 4.220 29 C -0.206 4.206 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.204 0.796 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.126 0.874 48 H 0.122 0.878 49 H 0.117 0.883 50 H 0.115 0.885 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.748 13.526 -11.600 31.312 hybrid contribution 0.953 -1.022 -1.224 1.857 sum -24.795 12.504 -12.823 30.587 Atomic orbital electron populations 1.21650 0.91350 1.02903 1.02412 1.20256 0.97756 0.95625 0.91081 1.22105 1.01882 0.93562 1.03206 1.20246 0.79919 0.78594 0.87929 1.90737 1.54229 1.51255 1.44448 1.48276 1.06159 1.63085 1.17397 1.22507 0.85345 1.02003 0.92749 1.23194 0.97971 1.05362 0.91836 1.22594 0.87898 0.93972 0.92375 0.85390 1.47017 1.33126 1.17307 1.11173 1.23277 1.02940 0.90466 1.02638 1.22470 1.00976 1.00432 0.90061 1.18959 0.84745 0.87274 0.98725 1.42301 1.03151 1.07949 1.83637 1.19230 0.89536 0.88768 1.39463 0.90882 1.24762 0.97317 0.96346 1.02549 1.69685 1.17717 1.16726 1.53944 0.86153 0.81097 0.81064 0.77655 1.21750 1.21797 1.20659 1.75117 1.11830 0.99842 1.25024 1.78305 1.12317 1.20476 0.95947 1.22469 0.90554 0.99289 0.89994 1.22240 1.04899 0.99151 0.90708 1.23326 0.92809 1.02548 1.03273 1.23003 0.98057 1.03208 0.96308 0.91544 0.91760 0.91925 0.91272 0.90906 0.91696 0.89989 0.89251 0.87911 0.88557 0.79559 0.94259 0.94463 0.78108 0.93531 0.90217 0.88887 0.87430 0.87779 0.88261 0.88520 0.88497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 7.65 37.16 0.28 -0.55 16 2 C -0.04 -0.28 0.60 -155.66 -0.09 -0.37 16 3 C -0.15 -0.69 6.98 37.16 0.26 -0.43 16 4 C 0.54 5.17 6.56 -10.99 -0.07 5.10 16 5 O -0.53 -7.23 16.17 5.55 0.09 -7.14 16 6 N -0.61 -4.85 3.32 -170.52 -0.57 -5.42 16 7 C 0.10 0.49 4.73 -3.06 -0.01 0.48 16 8 C -0.14 -0.91 6.35 -24.89 -0.16 -1.06 16 9 C 0.14 1.22 4.10 -65.78 -0.27 0.95 16 10 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 11 N -0.29 -3.98 3.39 -52.68 -0.18 -4.15 16 12 C -0.04 -0.63 10.60 -17.05 -0.18 -0.81 16 13 C 0.00 -0.03 6.61 -82.78 -0.55 -0.58 16 14 C 0.23 4.86 6.82 -5.19 -0.04 4.82 16 15 N -0.73 -18.87 5.59 -61.08 -0.34 -19.21 16 16 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 17 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 20 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 N -0.25 -5.11 12.41 33.29 0.41 -4.69 16 25 N -0.09 -1.62 13.16 60.35 0.79 -0.82 16 26 C 0.10 0.94 6.58 -2.53 -0.02 0.92 16 27 C -0.15 -0.75 3.35 -90.62 -0.30 -1.05 16 28 C -0.18 -0.62 6.96 -26.73 -0.19 -0.81 16 29 C -0.17 -0.65 9.41 -26.73 -0.25 -0.90 16 30 H 0.07 0.52 7.85 -51.93 -0.41 0.11 16 31 H 0.06 0.30 7.49 -51.93 -0.39 -0.08 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.27 4.47 -51.93 -0.23 0.04 16 34 H 0.07 0.24 6.63 -51.92 -0.34 -0.10 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.30 5.02 -51.93 -0.26 0.04 16 37 H 0.09 0.38 5.48 -51.93 -0.28 0.10 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.62 6.31 -51.93 -0.33 0.29 16 40 H 0.19 2.08 6.91 -52.48 -0.36 1.72 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.39 10.79 7.66 -40.82 -0.31 10.47 16 44 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 47 H 0.11 0.64 8.08 -51.93 -0.42 0.22 16 48 H 0.10 0.29 5.67 -51.93 -0.29 -0.01 16 49 H 0.10 0.30 8.03 -51.93 -0.42 -0.11 16 50 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.10 0.33 7.11 -51.92 -0.37 -0.04 16 LS Contribution 396.85 15.07 5.98 5.98 Total: -1.00 -36.00 396.85 -7.71 -43.71 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.77 Total: 3.81 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.83 Total: -1.66 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 0.85 Total: -62.11 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: 0.09 Total: -7.14 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.00 -7.71 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098706212.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.059 kcal (2) G-P(sol) polarization free energy of solvation -36.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds