Wall clock time and date at job start Wed Apr 1 2020 04:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47138 * 2 1 4 4 C 1.50698 * 109.46825 * 119.99543 * 2 1 3 5 5 O 1.21284 * 120.00273 * 354.18467 * 4 2 1 6 6 N 1.34779 * 120.00041 * 174.18336 * 4 2 1 7 7 C 1.47022 * 125.64619 * 355.12051 * 6 4 2 8 8 C 1.54329 * 107.27466 * 178.89718 * 7 6 4 9 9 C 1.55162 * 102.93548 * 337.80448 * 8 7 6 10 10 H 1.08999 * 111.00202 * 277.42782 * 9 8 7 11 11 N 1.46503 * 111.00263 * 153.61496 * 9 8 7 12 12 C 1.35310 * 125.86883 * 329.58148 * 11 9 8 13 13 C 1.35350 * 106.17643 * 179.97438 * 12 11 9 14 14 C 1.50700 * 126.75235 * 179.97438 * 13 12 11 15 15 N 1.46506 * 109.47125 * 94.99837 * 14 13 12 16 16 C 1.36930 * 119.99932 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00379 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00044 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99648 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00361 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47022 * 90.00111 * 20 18 16 22 22 H 1.48498 * 109.47007 * 210.00291 * 20 18 16 23 23 H 1.48502 * 109.46669 * 330.00393 * 20 18 16 24 24 N 1.33770 * 106.49734 * 0.02562 * 13 12 11 25 25 N 1.28635 * 108.88306 * 359.73404 * 24 13 12 26 26 C 1.47421 * 125.65196 * 175.06315 * 6 4 2 27 27 C 1.53000 * 109.47094 * 239.99559 * 2 1 3 28 28 C 1.53000 * 117.49506 * 128.62795 * 27 2 1 29 29 C 1.52997 * 117.50078 * 60.00362 * 27 2 1 30 30 H 1.08997 * 109.46913 * 294.57386 * 1 2 3 31 31 H 1.09007 * 109.46849 * 54.57173 * 1 2 3 32 32 H 1.08997 * 109.46937 * 174.56684 * 1 2 3 33 33 H 1.08998 * 109.46994 * 173.83393 * 3 2 1 34 34 H 1.09009 * 109.46802 * 293.82425 * 3 2 1 35 35 H 1.08991 * 109.47487 * 53.82466 * 3 2 1 36 36 H 1.08993 * 109.88699 * 59.47468 * 7 6 4 37 37 H 1.09005 * 109.88237 * 298.30689 * 7 6 4 38 38 H 1.09000 * 110.72009 * 219.44606 * 8 7 6 39 39 H 1.08992 * 110.72349 * 96.16516 * 8 7 6 40 40 H 1.08010 * 126.91104 * 359.97438 * 12 11 9 41 41 H 1.09000 * 109.47403 * 215.00115 * 14 13 12 42 42 H 1.09003 * 109.46839 * 335.00338 * 14 13 12 43 43 H 0.96995 * 119.99693 * 0.02562 * 15 14 13 44 44 H 0.97002 * 119.99524 * 179.97438 * 19 18 16 45 45 H 1.09002 * 110.36514 * 85.33408 * 26 6 4 46 46 H 1.09000 * 110.37028 * 323.01542 * 26 6 4 47 47 H 1.08999 * 115.54629 * 274.32899 * 27 2 1 48 48 H 1.08999 * 117.50265 * 359.97438 * 28 27 2 49 49 H 1.09004 * 117.49739 * 145.02477 * 28 27 2 50 50 H 1.08998 * 117.49727 * 214.97942 * 29 27 2 51 51 H 1.09008 * 117.49412 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.2492 -1.0781 2.0806 6 7 3.3517 -0.9369 1.3865 7 6 4.3955 -0.6379 0.3952 8 6 5.7488 -1.0386 1.0195 9 6 5.4496 -1.0144 2.5419 10 1 5.5204 -0.0014 2.9379 11 7 6.3423 -1.9221 3.2668 12 6 6.8757 -3.0663 2.7797 13 6 7.6316 -3.5840 3.7759 14 6 8.4348 -4.8583 3.7293 15 7 9.8202 -4.5493 3.3666 16 6 10.7417 -5.5568 3.2626 17 1 10.4471 -6.5793 3.4475 18 6 12.0545 -5.2641 2.9195 19 7 12.4136 -4.0179 2.6946 20 14 13.3114 -6.6386 2.7768 21 1 13.3244 -7.1549 1.3845 22 1 14.6575 -6.1163 3.1237 23 1 12.9513 -7.7372 3.7088 24 7 7.5246 -2.7426 4.8104 25 7 6.7580 -1.7657 4.4749 26 6 3.9875 -1.5245 2.5797 27 6 2.0400 -0.7213 -1.2492 28 6 3.0743 0.0050 -2.1115 29 6 1.6358 -0.1497 -2.6096 30 1 -0.3633 0.4274 0.9346 31 1 -0.3633 0.5958 -0.8374 32 1 -0.3633 -1.0230 -0.0973 33 1 3.1244 1.4445 0.1104 34 1 1.7697 1.9234 -0.9402 35 1 1.5893 1.9873 0.8295 36 1 4.3942 0.4275 0.1653 37 1 4.2208 -1.2153 -0.5127 38 1 6.5205 -0.3115 0.7666 39 1 6.0400 -2.0389 0.6996 40 1 6.7279 -3.4827 1.7941 41 1 8.4136 -5.3371 4.7083 42 1 8.0061 -5.5309 2.9864 43 1 10.0849 -3.6310 3.2010 44 1 13.3311 -3.8133 2.4552 45 1 3.9639 -2.6129 2.5250 46 1 3.4883 -1.1786 3.4848 47 1 2.1267 -1.8045 -1.1640 48 1 3.3910 0.9969 -1.7892 49 1 3.8417 -0.6004 -2.5940 50 1 1.4570 -0.8568 -3.4195 51 1 1.0062 0.7401 -2.6146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098706212.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:37 Heat of formation + Delta-G solvation = 92.519367 kcal Electronic energy + Delta-G solvation = -30809.909315 eV Core-core repulsion = 26747.367227 eV Total energy + Delta-G solvation = -4062.542088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.33500 -41.89556 -39.31419 -38.60938 -36.82344 -35.23822 -33.87652 -33.66592 -31.83022 -31.57378 -30.19835 -28.31334 -27.66205 -26.39822 -24.82461 -24.51428 -24.04474 -23.01202 -22.26083 -21.69463 -21.48955 -19.73132 -19.34970 -18.46884 -18.12423 -17.36734 -17.05467 -16.87336 -16.55263 -16.07331 -15.98623 -15.81599 -15.45898 -15.09902 -15.00416 -14.73474 -14.33289 -14.29887 -14.14539 -13.75370 -13.72328 -13.46801 -13.21436 -13.12280 -13.08101 -12.86145 -12.79788 -12.74259 -12.57531 -12.43870 -12.08428 -12.00804 -11.89087 -11.88269 -11.79869 -11.77762 -11.48308 -11.09817 -10.94454 -10.88120 -10.61450 -10.25467 -9.83365 -9.00787 -7.92104 -5.22304 0.53751 1.10641 1.43945 1.46674 1.52034 1.53467 1.62182 1.91243 2.60555 2.83789 2.97653 3.16190 3.35601 3.42935 3.48695 3.63913 3.66436 3.82562 3.88327 3.91997 4.01936 4.06007 4.16295 4.19921 4.23783 4.25388 4.31558 4.44934 4.49700 4.55732 4.66797 4.70233 4.76500 4.84407 4.84744 4.86234 4.91458 4.94725 4.99215 5.04082 5.11415 5.13590 5.17993 5.23422 5.29821 5.37384 5.38394 5.52538 5.62980 6.27702 6.30361 6.98319 7.34783 7.47747 8.05513 8.31909 9.31713 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.002054 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.114588 B =13631.902324 C =14454.038424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.037 4.037 3 C -0.149 4.149 4 C 0.538 3.462 5 O -0.584 6.584 6 N -0.609 5.609 7 C 0.098 3.902 8 C -0.137 4.137 9 C 0.130 3.870 10 H 0.139 0.861 11 N -0.275 5.275 12 C -0.015 4.015 13 C -0.035 4.035 14 C 0.235 3.765 15 N -0.738 5.738 16 C -0.243 4.243 17 H 0.083 0.917 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.978 3.022 21 H -0.282 1.282 22 H -0.299 1.299 23 H -0.269 1.269 24 N -0.296 5.296 25 N -0.110 5.110 26 C 0.104 3.896 27 C -0.163 4.163 28 C -0.170 4.170 29 C -0.166 4.166 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.227 0.773 41 H 0.027 0.973 42 H 0.064 0.936 43 H 0.372 0.628 44 H 0.251 0.749 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.095 0.905 48 H 0.117 0.883 49 H 0.108 0.892 50 H 0.098 0.902 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.506 13.488 -16.298 33.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.040 4.040 3 C -0.205 4.205 4 C 0.328 3.672 5 O -0.463 6.463 6 N -0.342 5.342 7 C -0.024 4.024 8 C -0.176 4.176 9 C 0.027 3.973 10 H 0.157 0.843 11 N -0.069 5.069 12 C -0.166 4.166 13 C -0.173 4.173 14 C 0.107 3.893 15 N -0.381 5.381 16 C -0.374 4.374 17 H 0.101 0.899 18 C -0.269 4.269 19 N -0.622 5.622 20 Si 0.807 3.193 21 H -0.208 1.208 22 H -0.226 1.226 23 H -0.194 1.194 24 N -0.163 5.163 25 N -0.089 5.089 26 C -0.021 4.021 27 C -0.182 4.182 28 C -0.207 4.207 29 C -0.203 4.203 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.139 0.861 39 H 0.119 0.881 40 H 0.243 0.757 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.203 0.797 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.113 0.887 48 H 0.135 0.865 49 H 0.126 0.874 50 H 0.116 0.884 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -26.028 14.042 -14.573 32.970 hybrid contribution 0.865 -1.154 -0.308 1.475 sum -25.163 12.888 -14.881 31.949 Atomic orbital electron populations 1.21650 0.92054 1.02193 1.02363 1.20227 0.97207 0.96496 0.90072 1.22133 1.02424 0.92039 1.03953 1.20957 0.79878 0.78022 0.88333 1.90710 1.55635 1.53523 1.46446 1.48312 1.06350 1.62209 1.17367 1.22747 0.83570 1.03805 0.92238 1.23280 0.99053 1.06335 0.88895 1.22986 0.86770 0.93392 0.94115 0.84283 1.47320 1.32152 1.17275 1.10164 1.23681 1.00393 0.89675 1.02896 1.22293 1.02992 1.00552 0.91480 1.18971 0.82854 0.88947 0.98485 1.42489 1.05012 1.06856 1.83700 1.19678 0.90170 0.89673 1.37913 0.89876 1.25626 0.99428 0.98655 1.03205 1.69852 1.17774 1.18848 1.55739 0.85071 0.77892 0.78365 0.77993 1.20845 1.22576 1.19434 1.75046 1.13503 1.01026 1.26704 1.78202 1.12783 1.20154 0.97726 1.22292 0.90727 0.98839 0.90199 1.22087 1.07043 0.98483 0.90583 1.23446 0.92622 1.02885 1.01700 1.23078 0.98731 1.03318 0.95202 0.93359 0.89486 0.93456 0.90157 0.88856 0.92675 0.87619 0.87643 0.86099 0.88138 0.75703 0.95481 0.91862 0.79718 0.94060 0.91054 0.90767 0.88664 0.86478 0.87403 0.88384 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 7.65 71.98 0.55 -1.06 16 2 C -0.04 -0.41 0.60 -52.93 -0.03 -0.44 16 3 C -0.15 -0.96 6.98 71.98 0.50 -0.46 16 4 C 0.54 10.01 6.56 87.66 0.58 10.58 16 5 O -0.58 -16.64 16.17 -3.04 -0.05 -16.69 16 6 N -0.61 -8.73 3.32 -811.80 -2.70 -11.43 16 7 C 0.10 0.65 4.73 86.73 0.41 1.07 16 8 C -0.14 -1.22 6.35 31.79 0.20 -1.01 16 9 C 0.13 2.08 4.10 46.38 0.19 2.27 16 10 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 11 N -0.28 -7.15 3.39 -320.57 -1.09 -8.24 16 12 C -0.02 -0.41 10.60 83.49 0.89 0.47 16 13 C -0.03 -1.30 6.61 41.60 0.28 -1.03 16 14 C 0.24 9.80 6.82 85.63 0.58 10.38 16 15 N -0.74 -38.49 5.59 -347.16 -1.94 -40.44 16 16 C -0.24 -13.58 9.99 84.03 0.84 -12.74 16 17 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 18 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 19 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16 20 Si 0.98 46.04 29.55 68.60 2.03 48.06 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 24 N -0.30 -12.28 12.41 -48.60 -0.60 -12.88 16 25 N -0.11 -3.89 13.16 37.02 0.49 -3.40 16 26 C 0.10 1.87 6.58 86.85 0.57 2.44 16 27 C -0.16 -1.22 3.35 -10.79 -0.04 -1.26 16 28 C -0.17 -0.48 6.96 30.60 0.21 -0.26 16 29 C -0.17 -0.75 9.41 30.59 0.29 -0.47 16 30 H 0.05 0.79 7.85 -2.39 -0.02 0.77 16 31 H 0.09 0.68 7.49 -2.38 -0.02 0.66 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.33 4.47 -2.39 -0.01 0.32 16 34 H 0.09 0.26 6.63 -2.38 -0.02 0.24 16 35 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.11 0.27 5.02 -2.39 -0.01 0.26 16 37 H 0.11 0.47 5.48 -2.38 -0.01 0.46 16 38 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.10 0.87 6.31 -2.39 -0.02 0.85 16 40 H 0.23 4.21 6.91 -2.91 -0.02 4.19 16 41 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.37 21.13 7.66 -92.71 -0.71 20.42 16 44 H 0.25 15.00 8.31 -92.71 -0.77 14.22 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.07 1.62 8.09 -2.39 -0.02 1.60 16 47 H 0.10 0.97 8.08 -2.39 -0.02 0.95 16 48 H 0.12 0.05 5.67 -2.39 -0.01 0.04 16 49 H 0.11 0.18 8.03 -2.38 -0.02 0.16 16 50 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 51 H 0.10 0.33 7.11 -2.38 -0.02 0.31 16 Total: -1.00 -81.50 396.85 3.16 -78.35 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.25 Total: 22.02 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 6.49 Total: 4.50 kcal Atomic # 7 Polarization: -130.68 SS G_CDS: -5.56 Total: -136.24 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.05 Total: -16.69 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -81.50 3.16 -78.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098706212.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.866 kcal (2) G-P(sol) polarization free energy of solvation -81.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds