Wall clock time and date at job start Wed Apr 1 2020 04:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47176 * 2 1 4 4 C 1.53004 * 109.47042 * 175.34391 * 3 2 1 5 5 C 1.50701 * 112.84523 * 297.56868 * 4 3 2 6 6 O 1.21281 * 119.99605 * 113.53770 * 5 4 3 7 7 N 1.34773 * 120.00464 * 293.53572 * 5 4 3 8 8 C 1.47578 * 134.49692 * 175.05133 * 7 5 4 9 9 C 1.53942 * 86.11832 * 155.35844 * 8 7 5 10 10 N 1.46500 * 113.73987 * 137.95266 * 9 8 7 11 11 C 1.35313 * 125.87191 * 275.32491 * 10 9 8 12 12 C 1.35347 * 106.17873 * 180.11473 * 11 10 9 13 13 C 1.50702 * 126.75381 * 179.84658 * 12 11 10 14 14 N 1.46499 * 109.46529 * 94.71658 * 13 12 11 15 15 C 1.36935 * 119.99830 * 179.72700 * 14 13 12 16 16 H 1.07998 * 120.00087 * 0.27719 * 15 14 13 17 17 C 1.38810 * 120.00329 * 180.27889 * 15 14 13 18 18 N 1.31627 * 119.99991 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00427 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47046 * 60.00269 * 19 17 15 21 21 H 1.48505 * 109.47191 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47381 * 300.00103 * 19 17 15 23 23 N 1.33769 * 106.49557 * 359.59677 * 12 11 10 24 24 N 1.28634 * 108.88617 * 0.25662 * 23 12 11 25 25 C 1.47580 * 134.48951 * 355.05223 * 7 5 4 26 26 C 1.53777 * 113.69283 * 68.83980 * 4 3 2 27 27 C 1.53780 * 87.08194 * 89.12783 * 26 4 3 28 28 C 1.53776 * 113.61528 * 166.37670 * 4 3 2 29 29 H 1.09001 * 109.47202 * 59.99739 * 1 2 3 30 30 H 1.08997 * 109.47338 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47129 * 300.00005 * 1 2 3 32 32 H 1.09004 * 109.47129 * 239.99995 * 2 1 3 33 33 H 1.09001 * 109.47202 * 120.00261 * 2 1 3 34 34 H 1.09000 * 109.47157 * 55.34038 * 3 2 1 35 35 H 1.09004 * 109.47260 * 295.33728 * 3 2 1 36 36 H 1.09008 * 113.76777 * 41.05591 * 8 7 5 37 37 H 1.09006 * 113.87228 * 269.67828 * 8 7 5 38 38 H 1.08997 * 113.74127 * 269.15276 * 9 8 7 39 39 H 1.08005 * 126.90975 * 359.97161 * 11 10 9 40 40 H 1.08999 * 109.47052 * 334.72305 * 13 12 11 41 41 H 1.08991 * 109.47812 * 214.72094 * 13 12 11 42 42 H 0.96999 * 120.00468 * 0.02562 * 14 13 12 43 43 H 0.96997 * 120.00282 * 179.97438 * 18 17 15 44 44 H 1.08999 * 113.77392 * 90.33965 * 25 7 5 45 45 H 1.09003 * 113.77251 * 318.93754 * 25 7 5 46 46 H 1.09002 * 113.61458 * 203.68036 * 26 4 3 47 47 H 1.08994 * 113.61298 * 334.57621 * 26 4 3 48 48 H 1.08992 * 113.61346 * 270.88218 * 27 26 4 49 49 H 1.09004 * 113.61270 * 139.97916 * 27 26 4 50 50 H 1.09001 * 113.61506 * 25.34822 * 28 4 3 51 51 H 1.09001 * 113.61812 * 156.24653 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5655 1.4440 0.1171 5 6 4.0540 0.8354 1.4063 6 8 4.6803 -0.2030 1.3876 7 7 3.7949 1.4450 2.5801 8 6 4.0276 1.1030 3.9967 9 6 3.9897 2.6192 4.2604 10 7 3.2441 2.9898 5.4657 11 6 1.9056 3.1720 5.5455 12 6 1.6462 3.5045 6.8316 13 6 0.2974 3.8123 7.4289 14 7 -0.2571 2.5988 8.0340 15 6 -1.4809 2.6372 8.6471 16 1 -2.0394 3.5610 8.6807 17 6 -2.0038 1.4888 9.2255 18 7 -1.3235 0.3627 9.1842 19 14 -3.6730 1.5412 10.0625 20 1 -4.7074 1.9502 9.0787 21 1 -4.0022 0.1947 10.5952 22 1 -3.6366 2.5203 11.1785 23 7 2.8220 3.5006 7.4694 24 7 3.7488 3.1918 6.6325 25 6 3.1646 2.7228 2.9649 26 6 4.2816 0.9010 -1.1307 27 6 4.2684 2.3416 -1.6687 28 6 4.2066 2.8045 -0.2036 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6101 1.9799 0.8453 35 1 1.7464 1.9317 -0.9288 36 1 5.0004 0.6485 4.1849 37 1 3.2060 0.5559 4.4591 38 1 4.9663 3.0996 4.2003 39 1 1.1888 3.0743 4.7435 40 1 -0.3737 4.1677 6.6470 41 1 0.4053 4.5824 8.1926 42 1 0.2445 1.7691 8.0041 43 1 -1.6887 -0.4397 9.5887 44 1 2.0884 2.6519 3.1226 45 1 3.4483 3.5616 2.3292 46 1 5.2824 0.5195 -0.9285 47 1 3.6748 0.2106 -1.7165 48 1 3.3739 2.5854 -2.2418 49 1 5.1892 2.6259 -2.1780 50 1 3.5392 3.6509 -0.0409 51 1 5.1869 2.9436 0.2522 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105307909.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:09 Heat of formation + Delta-G solvation = 131.563404 kcal Electronic energy + Delta-G solvation = -30795.955797 eV Core-core repulsion = 26735.106786 eV Total energy + Delta-G solvation = -4060.849012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.14554 -41.37649 -39.57732 -37.60075 -35.01617 -34.55181 -33.51207 -31.86534 -30.10074 -29.92632 -28.37090 -27.07648 -26.17156 -25.88105 -25.20593 -23.75139 -22.83825 -21.89341 -21.28456 -20.75395 -20.14687 -18.83896 -17.91410 -17.39663 -17.05524 -16.68676 -16.19002 -15.92811 -15.46725 -15.03421 -14.78052 -14.51796 -14.35488 -14.15359 -13.83430 -13.68586 -13.59336 -13.30156 -13.16663 -12.87940 -12.84439 -12.71789 -12.60267 -12.31722 -12.08924 -11.93487 -11.78302 -11.62653 -11.47836 -11.29955 -11.10151 -10.91182 -10.82183 -10.80311 -10.62114 -10.51502 -10.14278 -10.00250 -9.89463 -9.74111 -9.26980 -8.92334 -8.87400 -6.93102 -5.74530 -3.04529 1.69239 1.91549 2.13361 2.64374 2.85169 3.45382 3.45747 3.50245 3.51439 3.68174 3.84687 4.00514 4.16373 4.23582 4.29797 4.37971 4.61151 4.64611 4.67404 4.73929 4.76913 4.78491 4.83865 5.09671 5.10827 5.15419 5.18315 5.19963 5.26308 5.31570 5.34008 5.35702 5.44015 5.44919 5.47540 5.55731 5.60627 5.67919 5.76052 5.78388 5.86432 5.93795 5.99150 6.15435 6.35055 6.61338 6.66386 6.74896 7.11084 7.69844 7.71023 8.42541 8.77082 9.54293 10.09570 10.45283 11.48049 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012195 B = 0.002431 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.394677 B =11517.106971 C =12851.517190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.091 4.091 4 C -0.101 4.101 5 C 0.562 3.438 6 O -0.528 6.528 7 N -0.640 5.640 8 C 0.102 3.898 9 C 0.113 3.887 10 N -0.294 5.294 11 C -0.046 4.046 12 C 0.000 4.000 13 C 0.232 3.768 14 N -0.726 5.726 15 C -0.241 4.241 16 H 0.073 0.927 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.285 1.285 23 N -0.250 5.250 24 N -0.090 5.090 25 C 0.100 3.900 26 C -0.113 4.113 27 C -0.140 4.140 28 C -0.127 4.127 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.144 0.856 39 H 0.188 0.812 40 H 0.038 0.962 41 H 0.040 0.960 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.202 5.859 -26.333 29.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.128 4.128 4 C -0.104 4.104 5 C 0.352 3.648 6 O -0.403 6.403 7 N -0.378 5.378 8 C -0.021 4.021 9 C 0.009 3.991 10 N -0.089 5.089 11 C -0.196 4.196 12 C -0.138 4.138 13 C 0.103 3.897 14 N -0.371 5.371 15 C -0.372 4.372 16 H 0.091 0.909 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 N -0.118 5.118 24 N -0.069 5.069 25 C -0.024 4.024 26 C -0.150 4.150 27 C -0.177 4.177 28 C -0.165 4.165 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.162 0.838 39 H 0.205 0.795 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.109 0.891 47 H 0.094 0.906 48 H 0.103 0.897 49 H 0.091 0.909 50 H 0.096 0.904 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.740 5.256 -25.650 29.118 hybrid contribution -1.694 -0.478 -0.116 1.764 sum 11.046 4.778 -25.766 28.439 Atomic orbital electron populations 1.21763 0.95190 1.02087 1.01933 1.21527 0.96243 0.96029 1.02540 1.21406 0.90257 0.98107 1.03076 1.22207 0.97380 0.98484 0.92319 1.20122 0.78389 0.83346 0.82959 1.90732 1.40107 1.23200 1.86275 1.49620 1.60738 1.22140 1.05252 1.23613 1.04541 0.94421 0.79536 1.23688 0.97526 0.97427 0.80436 1.47117 1.06292 1.46308 1.09188 1.23302 0.85452 1.09615 1.01236 1.22491 0.96655 1.03913 0.90713 1.18960 0.83980 0.91554 0.95213 1.42298 1.20525 1.06729 1.67501 1.19172 0.94114 0.95464 1.28453 0.90932 1.24762 0.98859 0.95719 1.01513 1.69670 1.38451 0.99950 1.49937 0.86239 0.83746 0.76569 0.79435 1.21241 1.21738 1.21159 1.75129 0.97784 1.15232 1.23650 1.78307 1.22736 1.18269 0.87547 1.23644 0.99188 0.87614 0.91953 1.22871 1.01291 0.96775 0.94111 1.22827 1.02642 0.96349 0.95873 1.22988 1.01095 0.95163 0.97227 0.92684 0.92494 0.92439 0.91599 0.92090 0.91157 0.90333 0.88138 0.88236 0.83793 0.79519 0.94450 0.94268 0.78109 0.93437 0.87962 0.87868 0.89136 0.90570 0.89680 0.90886 0.90436 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.15 0.37 -0.75 16 2 C -0.13 -0.98 5.65 -26.73 -0.15 -1.13 16 3 C -0.09 -0.57 4.58 -26.73 -0.12 -0.69 16 4 C -0.10 -0.71 0.56 -154.85 -0.09 -0.80 16 5 C 0.56 5.70 5.96 -10.99 -0.07 5.64 16 6 O -0.53 -7.52 16.91 5.56 0.09 -7.43 16 7 N -0.64 -5.46 3.61 -178.55 -0.64 -6.11 16 8 C 0.10 0.96 8.64 -2.98 -0.03 0.94 16 9 C 0.11 0.93 5.15 -70.15 -0.36 0.57 16 10 N -0.29 -3.73 3.54 -56.30 -0.20 -3.93 16 11 C -0.05 -0.63 10.72 -17.05 -0.18 -0.81 16 12 C 0.00 0.00 6.61 -82.78 -0.55 -0.55 16 13 C 0.23 4.71 6.82 -5.19 -0.04 4.67 16 14 N -0.73 -18.63 5.59 -61.09 -0.34 -18.97 16 15 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 16 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 19 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 N -0.25 -4.91 12.41 33.29 0.41 -4.50 16 24 N -0.09 -1.51 13.17 60.35 0.79 -0.71 16 25 C 0.10 0.60 7.05 -2.98 -0.02 0.58 16 26 C -0.11 -0.78 6.75 -25.92 -0.17 -0.95 16 27 C -0.14 -0.67 7.73 -25.92 -0.20 -0.87 16 28 C -0.13 -0.64 6.39 -25.92 -0.17 -0.81 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.50 7.10 -51.93 -0.37 0.13 16 33 H 0.06 0.62 7.33 -51.93 -0.38 0.24 16 34 H 0.07 0.41 7.39 -51.93 -0.38 0.03 16 35 H 0.08 0.39 7.31 -51.93 -0.38 0.01 16 36 H 0.10 0.94 8.14 -51.92 -0.42 0.51 16 37 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.14 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.19 1.88 6.72 -52.48 -0.35 1.53 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.39 10.71 7.66 -40.82 -0.31 10.40 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.10 0.57 6.31 -51.93 -0.33 0.24 16 45 H 0.10 0.37 7.45 -51.93 -0.39 -0.01 16 46 H 0.09 0.75 7.73 -51.93 -0.40 0.35 16 47 H 0.08 0.51 7.03 -51.93 -0.37 0.14 16 48 H 0.08 0.33 7.60 -51.93 -0.39 -0.06 16 49 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.08 0.29 8.03 -51.93 -0.42 -0.13 16 51 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 LS Contribution 412.34 15.07 6.21 6.21 Total: -1.00 -35.88 412.34 -8.23 -44.11 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -8.24 Total: 4.08 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.02 Total: -2.28 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.75 Total: -62.03 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: 0.09 Total: -7.43 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.88 -8.23 -44.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105307909.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.672 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds