Wall clock time and date at job start Wed Apr 1 2020 04:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47176 * 2 1 4 4 C 1.53004 * 109.47042 * 175.34391 * 3 2 1 5 5 C 1.50701 * 112.84523 * 297.56868 * 4 3 2 6 6 O 1.21281 * 119.99605 * 113.53770 * 5 4 3 7 7 N 1.34773 * 120.00464 * 293.53572 * 5 4 3 8 8 C 1.47578 * 134.49692 * 175.05133 * 7 5 4 9 9 C 1.53942 * 86.11832 * 155.35844 * 8 7 5 10 10 N 1.46500 * 113.73987 * 137.95266 * 9 8 7 11 11 C 1.35313 * 125.87191 * 275.32491 * 10 9 8 12 12 C 1.35347 * 106.17873 * 180.11473 * 11 10 9 13 13 C 1.50702 * 126.75381 * 179.84658 * 12 11 10 14 14 N 1.46499 * 109.46529 * 94.71658 * 13 12 11 15 15 C 1.36935 * 119.99830 * 179.72700 * 14 13 12 16 16 H 1.07998 * 120.00087 * 0.27719 * 15 14 13 17 17 C 1.38810 * 120.00329 * 180.27889 * 15 14 13 18 18 N 1.31627 * 119.99991 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00427 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47046 * 60.00269 * 19 17 15 21 21 H 1.48505 * 109.47191 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47381 * 300.00103 * 19 17 15 23 23 N 1.33769 * 106.49557 * 359.59677 * 12 11 10 24 24 N 1.28634 * 108.88617 * 0.25662 * 23 12 11 25 25 C 1.47580 * 134.48951 * 355.05223 * 7 5 4 26 26 C 1.53777 * 113.69283 * 68.83980 * 4 3 2 27 27 C 1.53780 * 87.08194 * 89.12783 * 26 4 3 28 28 C 1.53776 * 113.61528 * 166.37670 * 4 3 2 29 29 H 1.09001 * 109.47202 * 59.99739 * 1 2 3 30 30 H 1.08997 * 109.47338 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47129 * 300.00005 * 1 2 3 32 32 H 1.09004 * 109.47129 * 239.99995 * 2 1 3 33 33 H 1.09001 * 109.47202 * 120.00261 * 2 1 3 34 34 H 1.09000 * 109.47157 * 55.34038 * 3 2 1 35 35 H 1.09004 * 109.47260 * 295.33728 * 3 2 1 36 36 H 1.09008 * 113.76777 * 41.05591 * 8 7 5 37 37 H 1.09006 * 113.87228 * 269.67828 * 8 7 5 38 38 H 1.08997 * 113.74127 * 269.15276 * 9 8 7 39 39 H 1.08005 * 126.90975 * 359.97161 * 11 10 9 40 40 H 1.08999 * 109.47052 * 334.72305 * 13 12 11 41 41 H 1.08991 * 109.47812 * 214.72094 * 13 12 11 42 42 H 0.96999 * 120.00468 * 0.02562 * 14 13 12 43 43 H 0.96997 * 120.00282 * 179.97438 * 18 17 15 44 44 H 1.08999 * 113.77392 * 90.33965 * 25 7 5 45 45 H 1.09003 * 113.77251 * 318.93754 * 25 7 5 46 46 H 1.09002 * 113.61458 * 203.68036 * 26 4 3 47 47 H 1.08994 * 113.61298 * 334.57621 * 26 4 3 48 48 H 1.08992 * 113.61346 * 270.88218 * 27 26 4 49 49 H 1.09004 * 113.61270 * 139.97916 * 27 26 4 50 50 H 1.09001 * 113.61506 * 25.34822 * 28 4 3 51 51 H 1.09001 * 113.61812 * 156.24653 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5655 1.4440 0.1171 5 6 4.0540 0.8354 1.4063 6 8 4.6803 -0.2030 1.3876 7 7 3.7949 1.4450 2.5801 8 6 4.0276 1.1030 3.9967 9 6 3.9897 2.6192 4.2604 10 7 3.2441 2.9898 5.4657 11 6 1.9056 3.1720 5.5455 12 6 1.6462 3.5045 6.8316 13 6 0.2974 3.8123 7.4289 14 7 -0.2571 2.5988 8.0340 15 6 -1.4809 2.6372 8.6471 16 1 -2.0394 3.5610 8.6807 17 6 -2.0038 1.4888 9.2255 18 7 -1.3235 0.3627 9.1842 19 14 -3.6730 1.5412 10.0625 20 1 -4.7074 1.9502 9.0787 21 1 -4.0022 0.1947 10.5952 22 1 -3.6366 2.5203 11.1785 23 7 2.8220 3.5006 7.4694 24 7 3.7488 3.1918 6.6325 25 6 3.1646 2.7228 2.9649 26 6 4.2816 0.9010 -1.1307 27 6 4.2684 2.3416 -1.6687 28 6 4.2066 2.8045 -0.2036 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6101 1.9799 0.8453 35 1 1.7464 1.9317 -0.9288 36 1 5.0004 0.6485 4.1849 37 1 3.2060 0.5559 4.4591 38 1 4.9663 3.0996 4.2003 39 1 1.1888 3.0743 4.7435 40 1 -0.3737 4.1677 6.6470 41 1 0.4053 4.5824 8.1926 42 1 0.2445 1.7691 8.0041 43 1 -1.6887 -0.4397 9.5887 44 1 2.0884 2.6519 3.1226 45 1 3.4483 3.5616 2.3292 46 1 5.2824 0.5195 -0.9285 47 1 3.6748 0.2106 -1.7165 48 1 3.3739 2.5854 -2.2418 49 1 5.1892 2.6259 -2.1780 50 1 3.5392 3.6509 -0.0409 51 1 5.1869 2.9436 0.2522 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105307909.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:08 Heat of formation + Delta-G solvation = 107.039947 kcal Electronic energy + Delta-G solvation = -30797.019214 eV Core-core repulsion = 26735.106786 eV Total energy + Delta-G solvation = -4061.912428 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.32115 -42.04750 -40.22429 -38.40009 -36.78543 -35.10400 -34.76818 -33.57119 -31.62415 -30.85382 -28.96556 -27.88625 -27.45898 -26.57233 -25.93191 -24.77345 -24.55370 -22.51822 -22.35106 -21.86759 -20.81129 -19.51277 -19.31858 -18.59585 -17.97622 -17.50013 -17.25420 -16.60765 -16.50349 -16.11214 -16.00484 -15.70176 -15.27998 -15.13083 -14.95987 -14.82901 -14.44692 -14.27226 -14.19500 -13.94425 -13.76599 -13.43158 -13.29371 -13.28058 -12.97588 -12.82373 -12.71634 -12.63775 -12.50666 -12.49227 -12.16254 -12.11838 -11.97640 -11.86156 -11.81124 -11.67665 -11.27183 -11.08931 -11.06388 -10.92517 -10.67619 -10.21735 -9.99787 -8.99689 -7.91557 -5.21637 0.56467 1.06589 1.38181 1.46739 1.52821 1.54788 1.60816 1.86185 2.61093 2.74415 3.02611 3.33680 3.38658 3.43156 3.51353 3.65574 3.69574 3.80164 3.90261 3.95186 4.09559 4.12798 4.18308 4.25115 4.25579 4.31238 4.34209 4.39048 4.51126 4.55795 4.64986 4.69407 4.76996 4.78286 4.81278 4.89226 4.89806 4.96995 5.05303 5.11793 5.15132 5.19182 5.20996 5.24503 5.31853 5.41413 5.51209 5.53191 5.63647 6.27970 6.41003 6.95396 7.34981 7.51868 8.07220 8.32097 9.32138 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012195 B = 0.002431 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.394677 B =11517.106971 C =12851.517190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.086 4.086 4 C -0.100 4.100 5 C 0.557 3.443 6 O -0.582 6.582 7 N -0.638 5.638 8 C 0.093 3.907 9 C 0.112 3.888 10 N -0.277 5.277 11 C -0.016 4.016 12 C -0.035 4.035 13 C 0.234 3.766 14 N -0.740 5.740 15 C -0.241 4.241 16 H 0.086 0.914 17 C -0.079 4.079 18 N -0.974 5.974 19 Si 0.977 3.023 20 H -0.271 1.271 21 H -0.300 1.300 22 H -0.279 1.279 23 N -0.297 5.297 24 N -0.108 5.108 25 C 0.110 3.890 26 C -0.124 4.124 27 C -0.128 4.128 28 C -0.119 4.119 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.028 0.972 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.166 0.834 39 H 0.230 0.770 40 H 0.067 0.933 41 H 0.029 0.971 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.116 0.884 45 H 0.142 0.858 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.102 0.898 49 H 0.077 0.923 50 H 0.104 0.896 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.001 8.633 -28.983 31.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.123 4.123 4 C -0.103 4.103 5 C 0.349 3.651 6 O -0.460 6.460 7 N -0.373 5.373 8 C -0.031 4.031 9 C 0.010 3.990 10 N -0.071 5.071 11 C -0.167 4.167 12 C -0.173 4.173 13 C 0.107 3.893 14 N -0.382 5.382 15 C -0.372 4.372 16 H 0.104 0.896 17 C -0.271 4.271 18 N -0.625 5.625 19 Si 0.806 3.194 20 H -0.196 1.196 21 H -0.227 1.227 22 H -0.205 1.205 23 N -0.164 5.164 24 N -0.086 5.086 25 C -0.012 4.012 26 C -0.162 4.162 27 C -0.165 4.165 28 C -0.156 4.156 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.184 0.816 39 H 0.246 0.754 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.201 0.799 43 H 0.058 0.942 44 H 0.134 0.866 45 H 0.160 0.840 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.121 0.879 49 H 0.096 0.904 50 H 0.122 0.878 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.553 8.112 -28.317 31.640 hybrid contribution -1.213 -1.372 0.622 1.933 sum 10.341 6.740 -27.695 30.321 Atomic orbital electron populations 1.21749 0.94666 1.01753 1.02597 1.21501 0.96647 0.97257 1.00904 1.21433 0.89255 0.96879 1.04771 1.22311 0.98033 0.99807 0.90132 1.20820 0.77477 0.82715 0.84129 1.90704 1.42601 1.25667 1.87074 1.49639 1.60360 1.22944 1.04392 1.23569 1.03728 0.95240 0.80596 1.24104 0.98839 0.96436 0.79599 1.47395 1.06357 1.44099 1.09262 1.23737 0.86186 1.06210 1.00556 1.22301 0.95536 1.06932 0.92522 1.19002 0.85755 0.89142 0.95426 1.42526 1.20022 1.07859 1.67836 1.19662 0.94761 0.95693 1.27119 0.89622 1.25632 1.02759 0.95547 1.03125 1.69851 1.40355 1.00526 1.51749 0.85156 0.79675 0.76007 0.78582 1.19623 1.22677 1.20500 1.75059 0.98830 1.16964 1.25512 1.78206 1.22518 1.19192 0.88724 1.23898 0.99452 0.87360 0.90527 1.22899 1.00090 0.98460 0.94728 1.22819 1.03739 0.93949 0.96026 1.23007 1.01208 0.94467 0.96944 0.90950 0.93456 0.92707 0.91808 0.95279 0.90088 0.87905 0.88748 0.89868 0.81628 0.75391 0.91499 0.95354 0.79920 0.94191 0.86617 0.83998 0.91430 0.90795 0.87948 0.90413 0.87770 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.13 -1.83 5.65 30.59 0.17 -1.66 16 3 C -0.09 -0.80 4.58 30.60 0.14 -0.66 16 4 C -0.10 -1.19 0.56 -52.40 -0.03 -1.22 16 5 C 0.56 10.93 5.96 87.66 0.52 11.45 16 6 O -0.58 -17.32 16.91 -3.03 -0.05 -17.37 16 7 N -0.64 -9.78 3.61 -837.19 -3.02 -12.80 16 8 C 0.09 1.69 8.64 86.48 0.75 2.44 16 9 C 0.11 1.56 5.15 46.75 0.24 1.80 16 10 N -0.28 -6.46 3.54 -332.05 -1.18 -7.63 16 11 C -0.02 -0.39 10.72 83.49 0.89 0.51 16 12 C -0.03 -1.22 6.61 41.60 0.28 -0.95 16 13 C 0.23 9.31 6.82 85.63 0.58 9.90 16 14 N -0.74 -38.05 5.59 -347.19 -1.94 -39.99 16 15 C -0.24 -13.32 9.99 84.03 0.84 -12.48 16 16 H 0.09 4.41 7.83 -2.91 -0.02 4.38 16 17 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 18 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 19 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 N -0.30 -11.71 12.41 -48.60 -0.60 -12.31 16 24 N -0.11 -3.56 13.17 37.02 0.49 -3.07 16 25 C 0.11 0.87 7.05 86.48 0.61 1.48 16 26 C -0.12 -1.59 6.75 31.12 0.21 -1.38 16 27 C -0.13 -0.82 7.73 31.12 0.24 -0.57 16 28 C -0.12 -0.74 6.39 31.12 0.20 -0.54 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.93 7.10 -2.38 -0.02 0.92 16 33 H 0.03 0.60 7.33 -2.39 -0.02 0.58 16 34 H 0.08 0.60 7.39 -2.39 -0.02 0.58 16 35 H 0.10 0.52 7.31 -2.38 -0.02 0.51 16 36 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.17 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.23 3.51 6.72 -2.91 -0.02 3.49 16 40 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.37 21.00 7.66 -92.71 -0.71 20.29 16 43 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.12 0.69 6.31 -2.39 -0.02 0.68 16 45 H 0.14 0.15 7.45 -2.39 -0.02 0.14 16 46 H 0.07 1.17 7.73 -2.39 -0.02 1.15 16 47 H 0.07 0.94 7.03 -2.39 -0.02 0.92 16 48 H 0.10 0.34 7.60 -2.39 -0.02 0.32 16 49 H 0.08 0.45 8.14 -2.38 -0.02 0.44 16 50 H 0.10 0.15 8.03 -2.39 -0.02 0.13 16 51 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 Total: -1.00 -82.69 412.34 3.06 -79.63 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.23 Total: 23.31 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 6.83 Total: 2.78 kcal Atomic # 7 Polarization: -130.44 SS G_CDS: -5.97 Total: -136.41 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.05 Total: -17.37 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -82.69 3.06 -79.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105307909.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.674 kcal (2) G-P(sol) polarization free energy of solvation -82.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds