Wall clock time and date at job start Wed Apr 1 2020 05:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47505 * 2 1 4 4 H 1.08998 * 110.05418 * 306.41989 * 3 2 1 5 5 C 1.54260 * 110.02766 * 67.83270 * 3 2 1 6 6 C 1.54897 * 104.19473 * 142.89768 * 5 3 2 7 7 C 1.54893 * 102.74565 * 322.05710 * 6 5 3 8 8 C 1.53870 * 110.03197 * 185.00278 * 3 2 1 9 9 H 1.08994 * 110.03544 * 0.04549 * 8 3 2 10 10 C 1.50699 * 110.03475 * 121.43234 * 8 3 2 11 11 O 1.21291 * 119.99648 * 359.97438 * 10 8 3 12 12 N 1.34769 * 120.00487 * 179.97438 * 10 8 3 13 13 C 1.47582 * 134.49836 * 179.97438 * 12 10 8 14 14 C 1.53942 * 86.11968 * 155.36152 * 13 12 10 15 15 N 1.46493 * 113.74173 * 137.95774 * 14 13 12 16 16 C 1.35316 * 125.86466 * 276.92165 * 15 14 13 17 17 C 1.35357 * 106.17695 * 179.97438 * 16 15 14 18 18 C 1.50693 * 126.75553 * 180.02562 * 17 16 15 19 19 N 1.46493 * 109.47395 * 94.99784 * 18 17 16 20 20 C 1.36936 * 120.00314 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 N 1.33781 * 106.49095 * 0.26298 * 17 16 15 29 29 N 1.28628 * 108.88674 * 359.56275 * 28 17 16 30 30 C 1.47818 * 134.45557 * 359.86602 * 12 10 8 31 31 H 1.09000 * 109.46672 * 300.00021 * 1 2 3 32 32 H 1.08998 * 109.47026 * 59.99529 * 1 2 3 33 33 H 1.08995 * 109.47002 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47411 * 240.00003 * 2 1 3 35 35 H 1.09004 * 109.47685 * 120.00301 * 2 1 3 36 36 H 1.09005 * 110.48991 * 261.57238 * 5 3 2 37 37 H 1.08994 * 110.49010 * 24.08783 * 5 3 2 38 38 H 1.09001 * 110.75284 * 80.37030 * 6 5 3 39 39 H 1.08997 * 110.75810 * 203.55781 * 6 5 3 40 40 H 1.09003 * 110.48438 * 279.26142 * 7 6 5 41 41 H 1.08996 * 110.48496 * 156.61586 * 7 6 5 42 42 H 1.09002 * 113.76642 * 41.05499 * 13 12 10 43 43 H 1.09003 * 113.87168 * 269.68063 * 13 12 10 44 44 H 1.09000 * 113.73946 * 269.15204 * 14 13 12 45 45 H 1.07997 * 126.91476 * 359.94242 * 16 15 14 46 46 H 1.09004 * 109.47069 * 335.00051 * 18 17 16 47 47 H 1.09000 * 109.47237 * 215.00556 * 18 17 16 48 48 H 0.97000 * 120.00040 * 0.02562 * 19 18 17 49 49 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 50 50 H 1.09000 * 113.76507 * 90.37541 * 30 12 10 51 51 H 1.08997 * 113.83481 * 318.91875 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5916 1.9976 -0.8239 5 6 1.7007 2.1229 1.3422 6 6 2.9291 3.0200 1.6346 7 6 4.1126 2.1495 1.1440 8 6 3.5735 1.4593 -0.1261 9 1 3.9543 0.4399 -0.1881 10 6 3.9825 2.2380 -1.3497 11 8 3.1367 2.7367 -2.0618 12 7 5.2879 2.3804 -1.6529 13 6 6.0308 3.0532 -2.7361 14 6 7.2061 3.1236 -1.7444 15 7 8.5050 2.8124 -2.3461 16 6 9.0089 1.5728 -2.5474 17 6 10.2214 1.7475 -3.1231 18 6 11.1833 0.6670 -3.5452 19 7 10.9865 0.3654 -4.9652 20 6 11.7541 -0.5907 -5.5749 21 1 12.5044 -1.1228 -5.0088 22 6 11.5679 -0.8760 -6.9205 23 7 12.3095 -1.7912 -7.5079 24 14 10.2708 0.0447 -7.8999 25 1 8.9821 -0.6895 -7.8273 26 1 10.0973 1.4066 -7.3338 27 1 10.7019 0.1490 -9.3171 28 7 10.4002 3.0682 -3.2387 29 7 9.3630 3.6710 -2.7745 30 6 6.5503 1.9265 -1.0321 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.7999 2.7292 1.2456 37 1 1.5750 1.3771 2.1270 38 1 2.8722 3.9494 1.0680 39 1 3.0127 3.2246 2.7020 40 1 4.3787 1.4080 1.8974 41 1 4.9719 2.7750 0.9027 42 1 5.6255 4.0281 -3.0071 43 1 6.2227 2.4173 -3.6004 44 1 7.2221 4.0351 -1.1469 45 1 8.5385 0.6331 -2.2985 46 1 11.0028 -0.2312 -2.9546 47 1 12.2061 1.0079 -3.3844 48 1 10.3130 0.8435 -5.4737 49 1 12.1821 -1.9878 -8.4492 50 1 6.8943 0.9576 -1.3941 51 1 6.5591 2.0034 0.0551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105320690.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:58 Heat of formation + Delta-G solvation = 107.677710 kcal Electronic energy + Delta-G solvation = -30328.969592 eV Core-core repulsion = 26267.084819 eV Total energy + Delta-G solvation = -4061.884773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.29724 -41.18162 -39.38911 -37.56402 -35.24459 -33.84229 -33.47365 -31.95745 -30.68213 -30.39753 -28.80848 -28.07149 -27.06478 -26.21170 -24.46385 -23.23406 -22.48571 -21.84758 -21.14288 -20.82376 -20.24584 -19.30199 -18.29409 -17.59522 -17.22073 -16.89264 -16.25459 -16.14061 -15.25963 -15.15503 -14.82366 -14.73136 -14.54869 -14.26146 -14.05004 -13.80115 -13.58372 -13.48728 -13.29803 -13.09760 -12.91771 -12.71175 -12.43420 -12.28770 -12.08212 -11.93685 -11.67657 -11.61731 -11.50438 -11.37548 -11.24478 -11.13746 -10.92903 -10.90842 -10.84912 -10.66617 -10.20284 -10.17151 -10.02420 -9.60625 -9.40657 -9.09657 -8.92311 -7.25503 -5.77225 -3.13249 1.54003 1.77407 2.05951 2.49546 2.68426 3.34216 3.38374 3.44952 3.47042 3.59769 3.91462 4.00803 4.06751 4.16514 4.40541 4.50084 4.56898 4.60195 4.64989 4.69152 4.70122 4.83910 4.90645 4.96715 4.97008 5.03875 5.12223 5.13703 5.15825 5.20077 5.25437 5.28660 5.30167 5.40060 5.51230 5.51496 5.60479 5.63037 5.66511 5.69049 5.70433 5.77533 5.85930 6.06513 6.18570 6.50462 6.51713 6.62950 6.99403 7.60739 7.96777 8.41361 8.61544 9.19154 9.91724 10.11290 11.40771 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013978 B = 0.002189 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.605975 B =12789.693178 C =13795.633591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.088 4.088 4 H 0.098 0.902 5 C -0.117 4.117 6 C -0.126 4.126 7 C -0.116 4.116 8 C -0.106 4.106 9 H 0.102 0.898 10 C 0.551 3.449 11 O -0.527 6.527 12 N -0.644 5.644 13 C 0.103 3.897 14 C 0.113 3.887 15 N -0.295 5.295 16 C -0.046 4.046 17 C -0.006 4.006 18 C 0.237 3.763 19 N -0.749 5.749 20 C -0.244 4.244 21 H 0.094 0.906 22 C 0.007 3.993 23 N -0.932 5.932 24 Si 0.882 3.118 25 H -0.285 1.285 26 H -0.277 1.277 27 H -0.290 1.290 28 N -0.251 5.251 29 N -0.089 5.089 30 C 0.097 3.903 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.146 0.854 45 H 0.190 0.810 46 H 0.047 0.953 47 H 0.048 0.952 48 H 0.362 0.638 49 H 0.260 0.740 50 H 0.104 0.896 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.261 7.300 24.135 34.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.106 4.106 4 H 0.116 0.884 5 C -0.154 4.154 6 C -0.164 4.164 7 C -0.154 4.154 8 C -0.127 4.127 9 H 0.120 0.880 10 C 0.341 3.659 11 O -0.402 6.402 12 N -0.381 5.381 13 C -0.021 4.021 14 C 0.009 3.991 15 N -0.089 5.089 16 C -0.196 4.196 17 C -0.144 4.144 18 C 0.108 3.892 19 N -0.396 5.396 20 C -0.374 4.374 21 H 0.111 0.889 22 C -0.189 4.189 23 N -0.580 5.580 24 Si 0.712 3.288 25 H -0.212 1.212 26 H -0.203 1.203 27 H -0.216 1.216 28 N -0.118 5.118 29 N -0.067 5.067 30 C -0.027 4.027 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.164 0.836 45 H 0.207 0.793 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.195 0.805 49 H 0.070 0.930 50 H 0.122 0.878 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -23.472 8.871 23.576 34.430 hybrid contribution -1.156 -0.588 -0.780 1.513 sum -24.628 8.283 22.796 34.566 Atomic orbital electron populations 1.21768 0.95556 1.01611 1.02018 1.21638 0.96327 0.95550 1.01888 1.21892 0.92044 0.97112 0.99582 0.88384 1.22439 0.98014 0.98473 0.96493 1.22515 0.94414 0.98364 1.01086 1.22423 0.98415 0.99100 0.95461 1.22002 0.98128 0.99935 0.92634 0.88042 1.20317 0.79325 0.79703 0.86533 1.90715 1.48701 1.48550 1.52200 1.49680 1.04236 1.55668 1.28511 1.23597 0.86595 0.99889 0.91970 1.23711 0.77692 1.01490 0.96232 1.47150 1.15031 1.05410 1.41325 1.23370 0.97521 0.90434 1.08277 1.22557 0.96191 0.93419 1.02231 1.18930 0.93811 0.89960 0.86482 1.42657 1.44877 1.46533 1.05498 1.19031 1.13693 1.11215 0.93420 0.88855 1.24635 0.99086 0.98648 0.96491 1.69696 1.41944 1.34954 1.11394 0.86580 0.82146 0.79970 0.80110 1.21168 1.20268 1.21598 1.75146 1.15199 1.05807 1.15664 1.78321 0.95774 1.18244 1.14357 1.23765 0.80550 0.97673 1.00674 0.92593 0.92610 0.92764 0.92019 0.91886 0.91438 0.91293 0.91421 0.91102 0.90182 0.91197 0.88077 0.88391 0.83638 0.79260 0.93506 0.93408 0.80499 0.93006 0.87766 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.77 37.16 0.36 -0.51 16 2 C -0.12 -0.70 5.06 -26.73 -0.14 -0.83 16 3 C -0.09 -0.60 2.53 -89.50 -0.23 -0.82 16 4 H 0.10 0.93 6.39 -51.93 -0.33 0.60 16 5 C -0.12 -0.63 5.53 -25.07 -0.14 -0.77 16 6 C -0.13 -0.65 6.91 -24.73 -0.17 -0.82 16 7 C -0.12 -0.53 5.90 -25.07 -0.15 -0.67 16 8 C -0.11 -0.67 2.75 -90.65 -0.25 -0.92 16 9 H 0.10 0.53 7.67 -51.93 -0.40 0.14 16 10 C 0.55 5.13 7.30 -10.99 -0.08 5.05 16 11 O -0.53 -7.03 15.94 5.55 0.09 -6.94 16 12 N -0.64 -4.87 3.45 -178.30 -0.62 -5.48 16 13 C 0.10 0.85 8.64 -2.97 -0.03 0.83 16 14 C 0.11 0.81 5.14 -70.14 -0.36 0.45 16 15 N -0.29 -3.41 3.54 -56.29 -0.20 -3.61 16 16 C -0.05 -0.57 10.72 -17.04 -0.18 -0.76 16 17 C -0.01 -0.11 6.62 -82.77 -0.55 -0.66 16 18 C 0.24 4.55 6.82 -5.20 -0.04 4.51 16 19 N -0.75 -17.98 5.40 -61.09 -0.33 -18.31 16 20 C -0.24 -6.87 10.47 -15.06 -0.16 -7.02 16 21 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 22 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 23 N -0.93 -29.24 13.97 55.49 0.78 -28.47 16 24 Si 0.88 22.56 27.74 -169.99 -4.72 17.85 16 25 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.91 6.51 56.52 0.37 -6.54 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 N -0.25 -4.62 12.41 33.29 0.41 -4.21 16 29 N -0.09 -1.38 13.16 60.35 0.79 -0.59 16 30 C 0.10 0.48 7.51 -2.83 -0.02 0.46 16 31 H 0.05 0.28 7.51 -51.93 -0.39 -0.11 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.32 8.00 -51.93 -0.42 -0.10 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.32 7.76 -51.93 -0.40 -0.09 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.29 6.01 -51.93 -0.31 -0.02 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.19 1.65 6.73 -52.49 -0.35 1.30 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.36 8.80 5.52 -40.82 -0.23 8.58 16 49 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 50 H 0.10 0.46 6.31 -51.93 -0.33 0.13 16 51 H 0.11 0.27 6.55 -51.93 -0.34 -0.07 16 LS Contribution 406.02 15.07 6.12 6.12 Total: -1.00 -36.55 406.02 -8.05 -44.59 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -8.16 Total: 1.41 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.21 Total: -2.37 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.84 Total: -60.66 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: 0.09 Total: -6.94 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.72 Total: 17.85 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.55 -8.05 -44.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105320690.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.271 kcal (2) G-P(sol) polarization free energy of solvation -36.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds