Wall clock time and date at job start Wed Apr 1 2020 05:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47505 * 2 1 4 4 H 1.08998 * 110.05418 * 306.41989 * 3 2 1 5 5 C 1.54260 * 110.02766 * 67.83270 * 3 2 1 6 6 C 1.54897 * 104.19473 * 142.89768 * 5 3 2 7 7 C 1.54893 * 102.74565 * 322.05710 * 6 5 3 8 8 C 1.53870 * 110.03197 * 185.00278 * 3 2 1 9 9 H 1.08994 * 110.03544 * 0.04549 * 8 3 2 10 10 C 1.50699 * 110.03475 * 121.43234 * 8 3 2 11 11 O 1.21291 * 119.99648 * 359.97438 * 10 8 3 12 12 N 1.34769 * 120.00487 * 179.97438 * 10 8 3 13 13 C 1.47582 * 134.49836 * 179.97438 * 12 10 8 14 14 C 1.53942 * 86.11968 * 155.36152 * 13 12 10 15 15 N 1.46493 * 113.74173 * 137.95774 * 14 13 12 16 16 C 1.35316 * 125.86466 * 276.92165 * 15 14 13 17 17 C 1.35357 * 106.17695 * 179.97438 * 16 15 14 18 18 C 1.50693 * 126.75553 * 180.02562 * 17 16 15 19 19 N 1.46493 * 109.47395 * 94.99784 * 18 17 16 20 20 C 1.36936 * 120.00314 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 N 1.33781 * 106.49095 * 0.26298 * 17 16 15 29 29 N 1.28628 * 108.88674 * 359.56275 * 28 17 16 30 30 C 1.47818 * 134.45557 * 359.86602 * 12 10 8 31 31 H 1.09000 * 109.46672 * 300.00021 * 1 2 3 32 32 H 1.08998 * 109.47026 * 59.99529 * 1 2 3 33 33 H 1.08995 * 109.47002 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47411 * 240.00003 * 2 1 3 35 35 H 1.09004 * 109.47685 * 120.00301 * 2 1 3 36 36 H 1.09005 * 110.48991 * 261.57238 * 5 3 2 37 37 H 1.08994 * 110.49010 * 24.08783 * 5 3 2 38 38 H 1.09001 * 110.75284 * 80.37030 * 6 5 3 39 39 H 1.08997 * 110.75810 * 203.55781 * 6 5 3 40 40 H 1.09003 * 110.48438 * 279.26142 * 7 6 5 41 41 H 1.08996 * 110.48496 * 156.61586 * 7 6 5 42 42 H 1.09002 * 113.76642 * 41.05499 * 13 12 10 43 43 H 1.09003 * 113.87168 * 269.68063 * 13 12 10 44 44 H 1.09000 * 113.73946 * 269.15204 * 14 13 12 45 45 H 1.07997 * 126.91476 * 359.94242 * 16 15 14 46 46 H 1.09004 * 109.47069 * 335.00051 * 18 17 16 47 47 H 1.09000 * 109.47237 * 215.00556 * 18 17 16 48 48 H 0.97000 * 120.00040 * 0.02562 * 19 18 17 49 49 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 50 50 H 1.09000 * 113.76507 * 90.37541 * 30 12 10 51 51 H 1.08997 * 113.83481 * 318.91875 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5916 1.9976 -0.8239 5 6 1.7007 2.1229 1.3422 6 6 2.9291 3.0200 1.6346 7 6 4.1126 2.1495 1.1440 8 6 3.5735 1.4593 -0.1261 9 1 3.9543 0.4399 -0.1881 10 6 3.9825 2.2380 -1.3497 11 8 3.1367 2.7367 -2.0618 12 7 5.2879 2.3804 -1.6529 13 6 6.0308 3.0532 -2.7361 14 6 7.2061 3.1236 -1.7444 15 7 8.5050 2.8124 -2.3461 16 6 9.0089 1.5728 -2.5474 17 6 10.2214 1.7475 -3.1231 18 6 11.1833 0.6670 -3.5452 19 7 10.9865 0.3654 -4.9652 20 6 11.7541 -0.5907 -5.5749 21 1 12.5044 -1.1228 -5.0088 22 6 11.5679 -0.8760 -6.9205 23 7 12.3095 -1.7912 -7.5079 24 14 10.2708 0.0447 -7.8999 25 1 8.9821 -0.6895 -7.8273 26 1 10.0973 1.4066 -7.3338 27 1 10.7019 0.1490 -9.3171 28 7 10.4002 3.0682 -3.2387 29 7 9.3630 3.6710 -2.7745 30 6 6.5503 1.9265 -1.0321 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.7999 2.7292 1.2456 37 1 1.5750 1.3771 2.1270 38 1 2.8722 3.9494 1.0680 39 1 3.0127 3.2246 2.7020 40 1 4.3787 1.4080 1.8974 41 1 4.9719 2.7750 0.9027 42 1 5.6255 4.0281 -3.0071 43 1 6.2227 2.4173 -3.6004 44 1 7.2221 4.0351 -1.1469 45 1 8.5385 0.6331 -2.2985 46 1 11.0028 -0.2312 -2.9546 47 1 12.2061 1.0079 -3.3844 48 1 10.3130 0.8435 -5.4737 49 1 12.1821 -1.9878 -8.4492 50 1 6.8943 0.9576 -1.3941 51 1 6.5591 2.0034 0.0551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105320690.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:57 Heat of formation + Delta-G solvation = 82.557042 kcal Electronic energy + Delta-G solvation = -30330.058906 eV Core-core repulsion = 26267.084819 eV Total energy + Delta-G solvation = -4062.974087 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -44.36467 -41.81268 -39.96414 -38.22760 -36.97855 -34.86163 -34.06753 -33.71246 -31.99117 -31.31164 -29.40038 -28.49505 -28.05868 -27.37033 -25.28715 -24.35227 -23.78490 -22.54511 -22.18413 -21.66771 -20.75863 -19.95603 -19.82687 -18.75152 -17.94437 -17.56846 -17.23688 -16.67354 -16.54348 -16.12627 -15.94737 -15.69768 -15.32561 -15.26372 -14.98582 -14.91279 -14.45872 -14.34799 -14.06063 -13.97615 -13.91170 -13.75289 -13.63614 -13.19242 -12.89909 -12.86555 -12.72981 -12.55249 -12.50229 -12.17411 -12.08815 -11.92630 -11.83542 -11.81611 -11.80025 -11.67738 -11.38672 -11.30934 -11.10073 -11.00840 -10.84458 -10.27401 -10.03190 -9.30717 -8.02182 -5.34927 0.52839 1.02720 1.35096 1.37759 1.40618 1.42726 1.46916 1.80993 2.47077 2.74283 3.01804 3.28499 3.36750 3.48140 3.58068 3.61494 3.67165 3.83611 3.93711 3.96682 4.12433 4.15883 4.22987 4.27111 4.31802 4.36951 4.41952 4.46507 4.50127 4.50604 4.63467 4.70077 4.73606 4.79561 4.80526 4.86089 4.92962 4.98978 5.11451 5.13021 5.16517 5.20767 5.23672 5.27552 5.38496 5.41509 5.58197 5.60270 5.76836 6.21632 6.38772 6.94570 7.06537 7.47744 7.82005 8.00686 9.18949 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013978 B = 0.002189 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.605975 B =12789.693178 C =13795.633591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.089 4.089 4 H 0.063 0.937 5 C -0.114 4.114 6 C -0.128 4.128 7 C -0.110 4.110 8 C -0.101 4.101 9 H 0.120 0.880 10 C 0.546 3.454 11 O -0.579 6.579 12 N -0.641 5.641 13 C 0.094 3.906 14 C 0.111 3.889 15 N -0.277 5.277 16 C -0.013 4.013 17 C -0.040 4.040 18 C 0.237 3.763 19 N -0.754 5.754 20 C -0.227 4.227 21 H 0.070 0.930 22 C -0.059 4.059 23 N -0.979 5.979 24 Si 0.948 3.052 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.296 1.296 28 N -0.295 5.295 29 N -0.106 5.106 30 C 0.108 3.892 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.166 0.834 45 H 0.234 0.766 46 H 0.073 0.927 47 H 0.033 0.967 48 H 0.362 0.638 49 H 0.258 0.742 50 H 0.120 0.880 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.778 6.975 27.172 37.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.108 4.108 4 H 0.081 0.919 5 C -0.152 4.152 6 C -0.166 4.166 7 C -0.148 4.148 8 C -0.122 4.122 9 H 0.138 0.862 10 C 0.338 3.662 11 O -0.458 6.458 12 N -0.377 5.377 13 C -0.030 4.030 14 C 0.009 3.991 15 N -0.072 5.072 16 C -0.165 4.165 17 C -0.178 4.178 18 C 0.110 3.890 19 N -0.399 5.399 20 C -0.358 4.358 21 H 0.088 0.912 22 C -0.250 4.250 23 N -0.630 5.630 24 Si 0.777 3.223 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.223 1.223 28 N -0.162 5.162 29 N -0.085 5.085 30 C -0.015 4.015 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.183 0.817 45 H 0.250 0.750 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.194 0.806 49 H 0.067 0.933 50 H 0.138 0.862 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -24.989 8.587 26.680 37.550 hybrid contribution -0.729 -0.449 -1.623 1.835 sum -25.718 8.138 25.057 36.817 Atomic orbital electron populations 1.21775 0.95738 1.01869 1.01654 1.21625 0.96219 0.95004 1.02245 1.21840 0.92609 0.97278 0.99106 0.91905 1.22430 0.97948 0.98714 0.96068 1.22526 0.94696 0.97610 1.01749 1.22472 0.98074 0.99435 0.94780 1.22067 0.97646 1.00490 0.92021 0.86185 1.20935 0.79228 0.79188 0.86889 1.90698 1.50276 1.50785 1.54014 1.49688 1.04565 1.55167 1.28281 1.23585 0.87443 0.99653 0.92324 1.24113 0.75109 1.03867 0.96002 1.47430 1.15417 1.04747 1.39571 1.23824 0.95636 0.91928 1.05067 1.22262 0.97836 0.92532 1.05169 1.18954 0.94066 0.91885 0.84070 1.42710 1.44139 1.45508 1.07568 1.19060 1.12608 1.10788 0.93303 0.91221 1.25363 1.01731 1.00117 0.97823 1.69853 1.44315 1.37237 1.11612 0.85510 0.79843 0.79008 0.77969 1.19918 1.19460 1.22323 1.75084 1.16980 1.06870 1.17300 1.78233 0.96065 1.18926 1.15236 1.24027 0.77887 0.97020 1.02539 0.91871 0.94126 0.92145 0.92991 0.90012 0.92349 0.89690 0.93407 0.89560 0.87619 0.90419 0.88703 0.89490 0.81664 0.74982 0.90900 0.94860 0.80605 0.93322 0.86185 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.77 71.98 0.70 -0.93 16 2 C -0.11 -1.17 5.06 30.60 0.15 -1.01 16 3 C -0.09 -1.12 2.53 -10.07 -0.03 -1.14 16 4 H 0.06 1.26 6.39 -2.39 -0.02 1.25 16 5 C -0.11 -1.03 5.53 31.67 0.18 -0.86 16 6 C -0.13 -1.01 6.91 31.89 0.22 -0.78 16 7 C -0.11 -0.55 5.90 31.67 0.19 -0.36 16 8 C -0.10 -1.01 2.75 -10.82 -0.03 -1.04 16 9 H 0.12 0.77 7.67 -2.39 -0.02 0.75 16 10 C 0.55 9.34 7.30 87.66 0.64 9.98 16 11 O -0.58 -15.78 15.94 -3.06 -0.05 -15.83 16 12 N -0.64 -7.92 3.45 -836.42 -2.89 -10.81 16 13 C 0.09 1.38 8.64 86.48 0.75 2.12 16 14 C 0.11 1.20 5.14 46.75 0.24 1.44 16 15 N -0.28 -5.54 3.54 -332.01 -1.18 -6.71 16 16 C -0.01 -0.28 10.72 83.49 0.89 0.61 16 17 C -0.04 -1.26 6.62 41.59 0.28 -0.98 16 18 C 0.24 8.81 6.82 85.63 0.58 9.39 16 19 N -0.75 -35.42 5.40 -347.20 -1.87 -37.29 16 20 C -0.23 -12.79 10.47 84.03 0.88 -11.91 16 21 H 0.07 4.19 8.06 -2.91 -0.02 4.17 16 22 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 23 N -0.98 -62.55 13.97 21.65 0.30 -62.25 16 24 Si 0.95 46.82 27.74 68.60 1.90 48.72 16 25 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.27 -12.77 6.51 99.48 0.65 -12.12 16 27 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 28 N -0.30 -10.60 12.41 -48.60 -0.60 -11.20 16 29 N -0.11 -3.14 13.16 37.02 0.49 -2.65 16 30 C 0.11 0.53 7.51 86.44 0.65 1.18 16 31 H 0.06 0.57 7.51 -2.39 -0.02 0.55 16 32 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.55 8.00 -2.38 -0.02 0.53 16 36 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.08 0.51 7.76 -2.39 -0.02 0.49 16 38 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.08 0.28 6.01 -2.39 -0.01 0.27 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.17 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.23 2.67 6.73 -2.91 -0.02 2.65 16 46 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 47 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.36 17.02 5.52 -92.71 -0.51 16.51 16 49 H 0.26 15.74 8.31 -92.71 -0.77 14.96 16 50 H 0.12 0.31 6.31 -2.39 -0.02 0.29 16 51 H 0.14 -0.21 6.55 -2.39 -0.02 -0.23 16 Total: -1.00 -83.71 406.02 3.23 -80.48 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.37 Total: 14.84 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 6.76 Total: 2.71 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -5.75 Total: -130.91 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.05 Total: -15.83 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.90 Total: 48.72 kcal Total: -83.71 3.23 -80.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105320690.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.032 kcal (2) G-P(sol) polarization free energy of solvation -83.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds