Wall clock time and date at job start Wed Apr 1 2020 05:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46908 * 2 1 4 4 C 1.53007 * 109.46899 * 119.99688 * 2 1 3 5 5 C 1.50706 * 109.46908 * 300.00003 * 4 2 1 6 6 O 1.21271 * 120.00215 * 0.02562 * 5 4 2 7 7 N 1.34773 * 119.99465 * 180.02562 * 5 4 2 8 8 C 1.46501 * 120.00017 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47705 * 179.97438 * 8 7 5 10 10 C 1.35348 * 126.75026 * 94.99599 * 9 8 7 11 11 N 1.35317 * 106.17735 * 179.78015 * 10 9 8 12 12 C 1.46497 * 125.87017 * 180.21003 * 11 10 9 13 13 C 1.53942 * 113.74196 * 13.74138 * 12 11 10 14 14 N 1.47811 * 86.03642 * 222.08692 * 13 12 11 15 15 C 1.36938 * 134.45712 * 204.64673 * 14 13 12 16 16 H 1.08006 * 119.99731 * 179.86683 * 15 14 13 17 17 C 1.38810 * 119.99900 * 359.86196 * 15 14 13 18 18 N 1.31615 * 120.00084 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99728 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47029 * 90.00090 * 19 17 15 21 21 H 1.48500 * 109.46724 * 210.00046 * 19 17 15 22 22 H 1.48499 * 109.47280 * 329.99803 * 19 17 15 23 23 C 1.47587 * 91.05119 * 24.54774 * 14 13 12 24 24 N 1.28721 * 108.26102 * 0.22816 * 11 10 9 25 25 N 1.28636 * 110.17709 * 0.02562 * 24 11 10 26 26 C 1.52993 * 109.47049 * 239.99427 * 2 1 3 27 27 C 1.53004 * 117.49721 * 128.74971 * 26 2 1 28 28 C 1.52998 * 117.49878 * 60.09251 * 26 2 1 29 29 H 1.09003 * 109.46915 * 300.00370 * 1 2 3 30 30 H 1.08998 * 109.46709 * 60.00422 * 1 2 3 31 31 H 1.09000 * 109.46966 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46792 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47091 * 299.99344 * 3 2 1 34 34 H 1.08994 * 109.47585 * 60.00253 * 3 2 1 35 35 H 1.08998 * 109.47160 * 180.02562 * 4 2 1 36 36 H 1.08996 * 109.47236 * 59.99801 * 4 2 1 37 37 H 0.96996 * 120.00676 * 359.97438 * 7 5 4 38 38 H 1.09004 * 109.46926 * 59.99730 * 8 7 5 39 39 H 1.09001 * 109.47077 * 300.00602 * 8 7 5 40 40 H 1.08002 * 126.91502 * 0.05047 * 10 9 8 41 41 H 1.09004 * 112.94415 * 145.33322 * 12 11 10 42 42 H 1.09001 * 113.77001 * 336.34585 * 13 12 11 43 43 H 1.08996 * 113.77272 * 107.74936 * 13 12 11 44 44 H 0.97005 * 119.99940 * 180.02562 * 18 17 15 45 45 H 1.09000 * 113.76860 * 221.15477 * 23 14 13 46 46 H 1.09000 * 113.86642 * 89.77210 * 23 14 13 47 47 H 1.08997 * 115.55568 * 274.41619 * 26 2 1 48 48 H 1.09009 * 117.49680 * 359.97438 * 27 26 2 49 49 H 1.09000 * 117.50043 * 145.02141 * 27 26 2 50 50 H 1.08999 * 117.49808 * 214.97722 * 28 26 2 51 51 H 1.09001 * 117.49666 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.5376 -0.0107 2.4798 6 8 0.8400 0.9751 2.3684 7 7 1.8636 -0.4708 3.7038 8 6 1.3758 0.2201 4.9000 9 6 1.8779 -0.4902 6.1305 10 6 2.9856 -0.1856 6.8461 11 7 3.0377 -1.0807 7.8596 12 6 4.0667 -1.1398 8.9006 13 6 4.9507 0.1186 8.9705 14 7 6.0846 -0.8128 9.1485 15 6 7.3269 -0.7139 9.7159 16 1 7.9886 -1.5676 9.7191 17 6 7.7359 0.4834 10.2868 18 7 6.9294 1.5235 10.2832 19 14 9.4310 0.6185 11.0602 20 1 10.4094 1.0604 10.0342 21 1 9.3928 1.6082 12.1666 22 1 9.8382 -0.7058 11.5946 23 6 5.3395 -1.8922 8.4718 24 7 2.0278 -1.8715 7.7516 25 7 1.3185 -1.5481 6.7284 26 6 2.0400 -0.7213 -1.2491 27 6 3.0764 0.0038 -2.1100 28 6 1.6375 -0.1485 -2.6095 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1300 -0.7209 1.2496 36 1 1.6767 -1.7488 1.2494 37 1 2.4212 -1.2594 3.7930 38 1 0.2857 0.2202 4.9004 39 1 1.7391 1.2478 4.8996 40 1 3.6847 0.6140 6.6504 41 1 3.6752 -1.4553 9.8678 42 1 4.9874 0.6821 8.0381 43 1 4.7548 0.7454 9.8404 44 1 7.2154 2.3604 10.6819 45 1 5.4534 -2.8678 8.9445 46 1 5.4896 -1.9223 7.3926 47 1 2.1254 -1.8047 -1.1646 48 1 3.3945 0.9950 -1.7866 49 1 3.8432 -0.6026 -2.5921 50 1 1.4583 -0.8549 -3.4200 51 1 1.0090 0.7421 -2.6145 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107167076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:56 Heat of formation + Delta-G solvation = 124.117150 kcal Electronic energy + Delta-G solvation = -29933.959306 eV Core-core repulsion = 25872.787400 eV Total energy + Delta-G solvation = -4061.171905 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.34347 -41.24479 -39.95027 -39.19499 -36.32417 -34.95790 -34.38302 -33.65825 -32.50878 -29.75672 -29.49435 -28.20671 -27.29841 -26.74481 -25.99018 -24.28453 -23.41366 -23.00830 -22.32498 -21.43156 -21.12836 -19.31931 -19.01412 -18.45388 -17.89282 -17.48302 -17.01386 -16.90730 -16.54367 -16.41414 -16.00452 -15.75342 -15.58861 -14.92423 -14.83610 -14.57042 -14.48175 -14.20412 -14.18004 -13.73237 -13.58587 -13.39333 -13.27103 -12.98970 -12.77778 -12.71353 -12.61506 -12.45965 -12.42802 -12.17501 -12.09987 -11.96663 -11.83862 -11.75738 -11.72081 -11.62050 -11.08546 -11.03984 -10.89320 -10.70017 -10.61419 -10.16387 -10.00208 -9.10825 -8.00976 -5.36194 0.57535 1.26187 1.29945 1.48621 1.50096 1.57536 1.73912 2.42300 2.45709 2.99290 3.07603 3.13112 3.31620 3.34904 3.72285 3.75705 3.76877 3.92490 4.00057 4.04587 4.13610 4.16360 4.26749 4.33590 4.41902 4.50536 4.57771 4.60650 4.65945 4.71185 4.72782 4.84590 4.87603 4.93226 4.93953 5.01462 5.06282 5.06970 5.10834 5.16017 5.18328 5.23269 5.34988 5.36783 5.37195 5.47458 5.59057 5.66621 5.71273 5.77372 6.59814 6.80437 7.33833 7.46660 7.48953 8.33773 9.15770 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.001913 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.510617 B =14635.939002 C =15854.472515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.012 4.012 3 C -0.152 4.152 4 C -0.126 4.126 5 C 0.514 3.486 6 O -0.562 6.562 7 N -0.720 5.720 8 C 0.220 3.780 9 C -0.048 4.048 10 C -0.015 4.015 11 N -0.269 5.269 12 C 0.105 3.895 13 C 0.165 3.835 14 N -0.628 5.628 15 C -0.238 4.238 16 H 0.091 0.909 17 C -0.056 4.056 18 N -0.948 5.948 19 Si 0.979 3.021 20 H -0.286 1.286 21 H -0.295 1.295 22 H -0.267 1.267 23 C 0.126 3.874 24 N -0.109 5.109 25 N -0.282 5.282 26 C -0.145 4.145 27 C -0.186 4.186 28 C -0.180 4.180 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.410 0.590 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.206 0.794 41 H 0.138 0.862 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.253 0.747 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.113 0.887 48 H 0.097 0.903 49 H 0.099 0.901 50 H 0.100 0.900 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 -4.447 -21.064 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.013 4.013 3 C -0.209 4.209 4 C -0.166 4.166 5 C 0.303 3.697 6 O -0.441 6.441 7 N -0.372 5.372 8 C 0.095 3.905 9 C -0.187 4.187 10 C -0.168 4.168 11 N -0.061 5.061 12 C 0.002 3.998 13 C 0.039 3.961 14 N -0.355 5.355 15 C -0.365 4.365 16 H 0.109 0.891 17 C -0.250 4.250 18 N -0.596 5.596 19 Si 0.807 3.193 20 H -0.213 1.213 21 H -0.221 1.221 22 H -0.192 1.192 23 C 0.000 4.000 24 N -0.088 5.088 25 N -0.148 5.148 26 C -0.163 4.163 27 C -0.222 4.222 28 C -0.217 4.217 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.245 0.755 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.223 0.777 41 H 0.155 0.845 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.131 0.869 48 H 0.115 0.885 49 H 0.117 0.883 50 H 0.118 0.882 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.025 -4.847 -20.301 23.154 hybrid contribution 1.744 0.953 0.406 2.029 sum -8.280 -3.894 -19.896 21.899 Atomic orbital electron populations 1.22012 0.94572 1.01504 1.02302 1.19711 0.95401 0.94552 0.91606 1.22160 1.00456 0.95956 1.02350 1.21782 1.03502 1.00872 0.90445 1.21085 0.79476 0.84264 0.84915 1.90592 1.39101 1.27769 1.86653 1.46056 1.53826 1.32429 1.04893 1.19216 0.99124 0.94375 0.77822 1.21969 0.96129 0.98776 1.01869 1.23833 1.02150 0.99549 0.91255 1.47715 1.18314 1.19805 1.20280 1.24688 0.83342 1.02090 0.89660 1.22616 0.82460 0.90869 1.00172 1.45908 1.14303 1.09966 1.65299 1.19338 0.90171 0.97460 1.29567 0.89108 1.25599 1.02091 0.95485 1.01860 1.69913 1.37238 1.02278 1.50174 0.85073 0.79107 0.77653 0.77450 1.21291 1.22148 1.19200 1.23017 0.85961 0.93966 0.97094 1.78284 0.96998 1.17195 1.16293 1.75008 1.23074 1.13367 1.03346 1.22339 1.03946 0.99211 0.90820 1.23205 0.92584 1.02614 1.03821 1.22967 0.98199 1.03304 0.97185 0.91916 0.93050 0.92855 0.92518 0.93085 0.91825 0.87172 0.87065 0.75501 0.90448 0.88867 0.77678 0.84474 0.93503 0.91835 0.93799 0.90607 0.92815 0.86875 0.88470 0.88305 0.88205 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.02 71.98 0.58 -1.99 16 2 C -0.01 -0.18 0.62 -52.18 -0.03 -0.22 16 3 C -0.15 -2.67 6.77 71.98 0.49 -2.18 16 4 C -0.13 -1.71 4.75 29.85 0.14 -1.56 16 5 C 0.51 9.96 7.24 87.66 0.63 10.59 16 6 O -0.56 -14.39 11.35 -3.00 -0.03 -14.42 16 7 N -0.72 -13.22 5.55 -466.80 -2.59 -15.81 16 8 C 0.22 4.72 6.23 85.63 0.53 5.25 16 9 C -0.05 -1.24 6.61 41.59 0.28 -0.96 16 10 C -0.01 -0.39 10.72 83.49 0.89 0.51 16 11 N -0.27 -8.17 3.54 -332.05 -1.18 -9.35 16 12 C 0.10 3.41 5.14 46.75 0.24 3.65 16 13 C 0.17 6.62 6.90 86.44 0.60 7.22 16 14 N -0.63 -28.10 3.70 -716.72 -2.65 -30.75 16 15 C -0.24 -11.97 10.70 84.03 0.90 -11.08 16 16 H 0.09 4.37 7.83 -2.91 -0.02 4.34 16 17 C -0.06 -2.92 5.50 84.86 0.47 -2.46 16 18 N -0.95 -52.01 11.39 21.65 0.25 -51.76 16 19 Si 0.98 42.14 29.55 68.60 2.03 44.17 16 20 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 C 0.13 4.34 8.74 86.48 0.76 5.09 16 24 N -0.11 -3.58 13.17 37.02 0.49 -3.09 16 25 N -0.28 -8.77 12.41 -48.60 -0.60 -9.37 16 26 C -0.15 -1.79 5.14 -10.80 -0.06 -1.84 16 27 C -0.19 -2.21 9.57 30.62 0.29 -1.92 16 28 C -0.18 -2.17 9.38 30.62 0.29 -1.89 16 29 H 0.06 1.41 5.51 -2.39 -0.01 1.40 16 30 H 0.05 0.86 7.29 -2.39 -0.02 0.85 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.90 6.97 -2.39 -0.02 0.89 16 33 H 0.05 0.86 7.07 -2.39 -0.02 0.84 16 34 H 0.06 1.44 5.51 -2.39 -0.01 1.42 16 35 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.41 6.39 8.46 -92.71 -0.78 5.61 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.21 4.73 6.73 -2.91 -0.02 4.71 16 41 H 0.14 4.36 8.14 -2.38 -0.02 4.34 16 42 H 0.05 1.81 6.31 -2.39 -0.02 1.80 16 43 H 0.06 2.92 7.16 -2.39 -0.02 2.90 16 44 H 0.25 13.60 8.31 -92.70 -0.77 12.83 16 45 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.11 1.17 8.11 -2.39 -0.02 1.15 16 48 H 0.10 1.24 5.85 -2.38 -0.01 1.23 16 49 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.09 1.17 7.07 -2.39 -0.02 1.15 16 Total: -1.00 -62.62 403.65 2.87 -59.75 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.17 Total: 24.43 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 7.00 Total: 6.21 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -6.29 Total: -120.13 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.03 Total: -14.42 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -62.62 2.87 -59.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107167076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.867 kcal (2) G-P(sol) polarization free energy of solvation -62.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds