Wall clock time and date at job start Wed Apr 1 2020 04:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47470 * 2 1 4 4 C 1.50702 * 109.47162 * 120.00336 * 2 1 3 5 5 O 1.21284 * 119.99890 * 119.99391 * 4 2 1 6 6 N 1.34781 * 120.00056 * 299.99792 * 4 2 1 7 7 C 1.46497 * 120.00007 * 179.97438 * 6 4 2 8 8 C 1.50696 * 109.46724 * 179.97438 * 7 6 4 9 9 C 1.35354 * 126.75046 * 95.00766 * 8 7 6 10 10 N 1.35312 * 106.17896 * 179.77314 * 9 8 7 11 11 C 1.46495 * 125.87211 * 180.20122 * 10 9 8 12 12 C 1.53947 * 113.73960 * 13.74105 * 11 10 9 13 13 N 1.47807 * 86.03553 * 222.08120 * 12 11 10 14 14 C 1.36938 * 134.45499 * 204.64050 * 13 12 11 15 15 H 1.08004 * 119.99910 * 179.86994 * 14 13 12 16 16 C 1.38809 * 120.00304 * 359.87363 * 14 13 12 17 17 N 1.31624 * 119.99737 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00186 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47078 * 89.99619 * 18 16 14 20 20 H 1.48494 * 109.47206 * 209.99526 * 18 16 14 21 21 H 1.48499 * 109.47191 * 330.00002 * 18 16 14 22 22 C 1.47581 * 91.05036 * 24.54907 * 13 12 11 23 23 N 1.28716 * 108.26109 * 0.22378 * 10 9 8 24 24 N 1.28635 * 110.18127 * 359.97438 * 23 10 9 25 25 C 1.53003 * 109.47115 * 239.99856 * 2 1 3 26 26 C 1.53774 * 113.61573 * 160.47737 * 25 2 1 27 27 C 1.53784 * 87.08248 * 220.02190 * 26 25 2 28 28 C 1.53776 * 87.07933 * 25.43561 * 27 26 25 29 29 H 1.09010 * 109.46654 * 300.00066 * 1 2 3 30 30 H 1.09003 * 109.47034 * 59.99117 * 1 2 3 31 31 H 1.08992 * 109.47655 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46958 * 173.34897 * 3 2 1 33 33 H 1.09000 * 109.47260 * 293.34821 * 3 2 1 34 34 H 1.09003 * 109.47037 * 53.35092 * 3 2 1 35 35 H 0.97000 * 119.99157 * 359.97438 * 6 4 2 36 36 H 1.09004 * 109.47063 * 60.00509 * 7 6 4 37 37 H 1.08992 * 109.47285 * 299.99807 * 7 6 4 38 38 H 1.07998 * 126.90871 * 0.02997 * 9 8 7 39 39 H 1.09001 * 112.94753 * 145.33153 * 11 10 9 40 40 H 1.09000 * 113.76961 * 336.34831 * 12 11 10 41 41 H 1.09002 * 113.76709 * 107.74661 * 12 11 10 42 42 H 0.96992 * 119.99642 * 180.02562 * 17 16 14 43 43 H 1.08998 * 113.76729 * 221.14520 * 22 13 12 44 44 H 1.08999 * 113.87086 * 89.76445 * 22 13 12 45 45 H 1.09005 * 112.85139 * 291.79035 * 25 2 1 46 46 H 1.09000 * 113.61915 * 334.57294 * 26 25 2 47 47 H 1.09005 * 113.61232 * 105.47508 * 26 25 2 48 48 H 1.08998 * 113.61217 * 270.88746 * 27 26 25 49 49 H 1.09004 * 113.61378 * 139.98360 * 27 26 25 50 50 H 1.09000 * 113.61246 * 220.01717 * 28 27 26 51 51 H 1.08998 * 113.62086 * 89.11605 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1191 6 7 1.7068 -0.2501 2.4546 7 6 2.1947 -0.9411 3.6507 8 6 1.6930 -0.2302 4.8811 9 6 0.5853 -0.5344 5.5971 10 7 0.5337 0.3608 6.6104 11 6 -0.4951 0.4206 7.6516 12 6 -1.3796 -0.8375 7.7218 13 7 -2.5130 0.0943 7.9000 14 6 -3.7553 -0.0041 8.4676 15 1 -4.4167 0.8498 8.4708 16 6 -4.1646 -1.2012 9.0388 17 7 -3.3588 -2.2419 9.0344 18 14 -5.8590 -1.3351 9.8137 19 1 -6.8387 -1.7763 8.7886 20 1 -5.8206 -2.3250 10.9199 21 1 -6.2649 -0.0106 10.3485 22 6 -1.7677 1.1733 7.2230 23 7 1.5438 1.1513 6.5021 24 7 2.2534 0.8269 5.4794 25 6 2.0400 -0.7213 -1.2492 26 6 3.4973 -0.3826 -1.6043 27 6 3.0525 -0.3671 -3.0763 28 6 1.6418 -0.0312 -2.5646 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0275 -0.0005 32 1 3.1236 1.4446 0.1190 33 1 1.7772 1.9208 -0.9435 34 1 1.5828 1.9895 0.8245 35 1 1.1494 0.5388 2.5435 36 1 3.2847 -0.9415 3.6509 37 1 1.8309 -1.9685 3.6505 38 1 -0.1141 -1.3337 5.4016 39 1 -0.1034 0.7361 8.6186 40 1 -1.4166 -1.4012 6.7896 41 1 -1.1837 -1.4642 8.5918 42 1 -3.6449 -3.0784 9.4333 43 1 -1.8812 2.1490 7.6954 44 1 -1.9179 1.2032 6.1438 45 1 1.8295 -1.7908 -1.2361 46 1 3.8217 0.5906 -1.2359 47 1 4.2009 -1.1813 -1.3692 48 1 3.1202 -1.3400 -3.5632 49 1 3.5067 0.4327 -3.6613 50 1 0.8474 -0.5462 -3.1048 51 1 1.4588 1.0381 -2.4587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107189918.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:18 Heat of formation + Delta-G solvation = 133.401345 kcal Electronic energy + Delta-G solvation = -30437.568341 eV Core-core repulsion = 26376.799028 eV Total energy + Delta-G solvation = -4060.769312 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.09391 -40.84625 -38.62543 -38.35660 -35.22706 -34.34866 -33.36274 -31.97668 -31.11769 -28.00164 -27.87779 -26.89616 -25.99993 -25.49295 -25.29618 -24.41834 -22.91859 -21.95291 -21.10353 -20.23549 -19.65265 -18.72694 -17.60499 -17.16115 -16.66914 -16.52880 -15.92079 -15.54886 -15.36382 -15.14873 -14.99324 -14.70425 -14.33339 -14.12220 -13.68162 -13.50550 -13.22593 -13.04166 -12.95780 -12.80548 -12.46185 -12.23461 -12.14958 -12.11190 -11.92748 -11.86878 -11.62184 -11.43131 -11.39347 -11.20890 -10.98968 -10.97078 -10.61745 -10.56187 -10.52789 -10.30526 -10.26195 -9.92992 -9.81106 -9.57342 -9.14407 -9.11813 -9.04993 -7.29033 -6.07553 -3.43079 1.79422 2.42158 2.58904 2.61702 3.24238 3.29586 3.31535 3.33416 4.19457 4.25417 4.32618 4.35509 4.38343 4.59871 4.67453 4.68970 4.71127 4.77469 4.89719 4.95982 5.02578 5.13022 5.17746 5.25029 5.37718 5.40436 5.43715 5.46220 5.51276 5.55515 5.59317 5.62648 5.66593 5.70942 5.74261 5.82014 5.87856 5.96302 6.02162 6.06679 6.07846 6.13858 6.27109 6.29550 6.33031 6.50857 6.76639 7.00182 7.13354 7.41743 7.64750 8.14482 8.71249 8.72796 9.38912 10.16164 11.09678 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016272 B = 0.002027 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.316242 B =13812.061288 C =14655.781689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 C -0.146 4.146 4 C 0.525 3.475 5 O -0.538 6.538 6 N -0.722 5.722 7 C 0.215 3.785 8 C -0.062 4.062 9 C -0.015 4.015 10 N -0.265 5.265 11 C 0.077 3.923 12 C 0.164 3.836 13 N -0.598 5.598 14 C -0.233 4.233 15 H 0.087 0.913 16 C -0.001 4.001 17 N -0.919 5.919 18 Si 0.920 3.080 19 H -0.286 1.286 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.120 3.880 23 N -0.089 5.089 24 N -0.267 5.267 25 C -0.083 4.083 26 C -0.138 4.138 27 C -0.143 4.143 28 C -0.139 4.139 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.401 0.599 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.190 0.810 39 H 0.132 0.868 40 H 0.041 0.959 41 H 0.092 0.908 42 H 0.259 0.741 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.544 4.687 -19.299 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.075 4.075 3 C -0.203 4.203 4 C 0.311 3.689 5 O -0.415 6.415 6 N -0.374 5.374 7 C 0.090 3.910 8 C -0.201 4.201 9 C -0.169 4.169 10 N -0.057 5.057 11 C -0.025 4.025 12 C 0.037 3.963 13 N -0.325 5.325 14 C -0.359 4.359 15 H 0.105 0.895 16 C -0.199 4.199 17 N -0.565 5.565 18 Si 0.749 3.251 19 H -0.213 1.213 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.007 4.007 23 N -0.068 5.068 24 N -0.134 5.134 25 C -0.101 4.101 26 C -0.175 4.175 27 C -0.181 4.181 28 C -0.176 4.176 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.236 0.764 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.207 0.793 39 H 0.150 0.850 40 H 0.059 0.941 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.114 0.886 46 H 0.102 0.898 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.498 5.028 -18.511 21.867 hybrid contribution -1.930 -0.746 0.227 2.082 sum 8.568 4.282 -18.284 20.641 Atomic orbital electron populations 1.21842 0.92361 1.02851 1.02763 1.20723 0.97154 0.96434 0.93158 1.22017 1.01822 0.93606 1.02861 1.20517 0.79870 0.84324 0.84194 1.90688 1.37750 1.26286 1.86752 1.46078 1.53881 1.32242 1.05232 1.19271 0.99487 0.94126 0.78146 1.21738 0.96815 0.99837 1.01721 1.23504 1.01781 0.99681 0.91948 1.47908 1.18512 1.19211 1.20093 1.25284 0.83410 1.04608 0.89185 1.22746 0.82157 0.90234 1.01175 1.45671 1.14426 1.07812 1.64585 1.18999 0.89059 0.97490 1.30397 0.89489 1.24858 0.98944 0.95452 1.00618 1.69760 1.35881 1.02088 1.48738 0.86011 0.82759 0.77671 0.78664 1.21271 1.21347 1.20325 1.22924 0.86626 0.94359 0.96806 1.78272 0.96493 1.16444 1.15596 1.75021 1.22800 1.12386 1.03188 1.22356 0.96425 0.99887 0.91466 1.23031 0.96624 1.02279 0.95561 1.22793 0.96871 1.01641 0.96749 1.23051 0.97164 1.00919 0.96446 0.92067 0.91266 0.91922 0.91633 0.91075 0.92021 0.76408 0.89867 0.89727 0.79260 0.85038 0.94105 0.89023 0.93077 0.91975 0.93997 0.88588 0.89792 0.91282 0.90377 0.91668 0.91574 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.20 37.16 0.30 -0.75 16 2 C -0.07 -0.61 0.53 -155.66 -0.08 -0.69 16 3 C -0.15 -1.06 7.31 37.16 0.27 -0.79 16 4 C 0.52 6.02 6.44 -10.98 -0.07 5.95 16 5 O -0.54 -7.97 15.80 5.55 0.09 -7.88 16 6 N -0.72 -7.82 5.34 -61.48 -0.33 -8.14 16 7 C 0.21 2.58 6.23 -5.20 -0.03 2.54 16 8 C -0.06 -0.87 6.62 -82.78 -0.55 -1.41 16 9 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 10 N -0.26 -4.25 3.54 -56.31 -0.20 -4.45 16 11 C 0.08 1.31 5.14 -70.16 -0.36 0.95 16 12 C 0.16 3.31 6.90 -2.84 -0.02 3.29 16 13 N -0.60 -13.63 3.70 -177.90 -0.66 -14.29 16 14 C -0.23 -5.93 10.70 -15.06 -0.16 -6.09 16 15 H 0.09 2.14 7.83 -52.48 -0.41 1.73 16 16 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16 17 N -0.92 -24.92 11.39 55.49 0.63 -24.29 16 18 Si 0.92 20.55 29.55 -169.99 -5.02 15.52 16 19 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 22 C 0.12 2.18 8.74 -2.97 -0.03 2.16 16 23 N -0.09 -1.53 13.16 60.35 0.79 -0.74 16 24 N -0.27 -4.39 12.41 33.29 0.41 -3.98 16 25 C -0.08 -0.72 2.44 -89.81 -0.22 -0.93 16 26 C -0.14 -1.18 7.18 -25.92 -0.19 -1.37 16 27 C -0.14 -1.00 8.08 -25.92 -0.21 -1.21 16 28 C -0.14 -0.93 6.62 -25.92 -0.17 -1.11 16 29 H 0.06 0.44 7.57 -51.92 -0.39 0.05 16 30 H 0.07 0.43 7.54 -51.93 -0.39 0.04 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.52 6.47 -51.93 -0.34 0.18 16 33 H 0.07 0.42 6.08 -51.93 -0.32 0.11 16 34 H 0.06 0.43 7.75 -51.93 -0.40 0.02 16 35 H 0.40 3.92 7.43 -40.82 -0.30 3.62 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.19 2.41 6.73 -52.49 -0.35 2.05 16 39 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 40 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 41 H 0.09 2.07 7.17 -51.93 -0.37 1.70 16 42 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.10 0.98 7.96 -51.93 -0.41 0.56 16 46 H 0.08 0.68 5.68 -51.93 -0.29 0.38 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.08 0.50 6.13 -51.93 -0.32 0.18 16 LS Contribution 403.95 15.07 6.09 6.09 Total: -1.00 -29.98 403.95 -7.98 -37.96 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.00 Total: 4.19 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.79 Total: 0.02 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.65 Total: -55.89 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.09 Total: -7.88 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.98 -7.98 -37.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107189918.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.359 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds