Wall clock time and date at job start Wed Apr 1 2020 04:46:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52997 * 109.47470 * 2 1
4 4 C 1.50702 * 109.47162 * 120.00336 * 2 1 3
5 5 O 1.21284 * 119.99890 * 119.99391 * 4 2 1
6 6 N 1.34781 * 120.00056 * 299.99792 * 4 2 1
7 7 C 1.46497 * 120.00007 * 179.97438 * 6 4 2
8 8 C 1.50696 * 109.46724 * 179.97438 * 7 6 4
9 9 C 1.35354 * 126.75046 * 95.00766 * 8 7 6
10 10 N 1.35312 * 106.17896 * 179.77314 * 9 8 7
11 11 C 1.46495 * 125.87211 * 180.20122 * 10 9 8
12 12 C 1.53947 * 113.73960 * 13.74105 * 11 10 9
13 13 N 1.47807 * 86.03553 * 222.08120 * 12 11 10
14 14 C 1.36938 * 134.45499 * 204.64050 * 13 12 11
15 15 H 1.08004 * 119.99910 * 179.86994 * 14 13 12
16 16 C 1.38809 * 120.00304 * 359.87363 * 14 13 12
17 17 N 1.31624 * 119.99737 * 359.97438 * 16 14 13
18 18 Si 1.86799 * 120.00186 * 179.97438 * 16 14 13
19 19 H 1.48503 * 109.47078 * 89.99619 * 18 16 14
20 20 H 1.48494 * 109.47206 * 209.99526 * 18 16 14
21 21 H 1.48499 * 109.47191 * 330.00002 * 18 16 14
22 22 C 1.47581 * 91.05036 * 24.54907 * 13 12 11
23 23 N 1.28716 * 108.26109 * 0.22378 * 10 9 8
24 24 N 1.28635 * 110.18127 * 359.97438 * 23 10 9
25 25 C 1.53003 * 109.47115 * 239.99856 * 2 1 3
26 26 C 1.53774 * 113.61573 * 160.47737 * 25 2 1
27 27 C 1.53784 * 87.08248 * 220.02190 * 26 25 2
28 28 C 1.53776 * 87.07933 * 25.43561 * 27 26 25
29 29 H 1.09010 * 109.46654 * 300.00066 * 1 2 3
30 30 H 1.09003 * 109.47034 * 59.99117 * 1 2 3
31 31 H 1.08992 * 109.47655 * 179.97438 * 1 2 3
32 32 H 1.09004 * 109.46958 * 173.34897 * 3 2 1
33 33 H 1.09000 * 109.47260 * 293.34821 * 3 2 1
34 34 H 1.09003 * 109.47037 * 53.35092 * 3 2 1
35 35 H 0.97000 * 119.99157 * 359.97438 * 6 4 2
36 36 H 1.09004 * 109.47063 * 60.00509 * 7 6 4
37 37 H 1.08992 * 109.47285 * 299.99807 * 7 6 4
38 38 H 1.07998 * 126.90871 * 0.02997 * 9 8 7
39 39 H 1.09001 * 112.94753 * 145.33153 * 11 10 9
40 40 H 1.09000 * 113.76961 * 336.34831 * 12 11 10
41 41 H 1.09002 * 113.76709 * 107.74661 * 12 11 10
42 42 H 0.96992 * 119.99642 * 180.02562 * 17 16 14
43 43 H 1.08998 * 113.76729 * 221.14520 * 22 13 12
44 44 H 1.08999 * 113.87086 * 89.76445 * 22 13 12
45 45 H 1.09005 * 112.85139 * 291.79035 * 25 2 1
46 46 H 1.09000 * 113.61915 * 334.57294 * 26 25 2
47 47 H 1.09005 * 113.61232 * 105.47508 * 26 25 2
48 48 H 1.08998 * 113.61217 * 270.88746 * 27 26 25
49 49 H 1.09004 * 113.61378 * 139.98360 * 27 26 25
50 50 H 1.09000 * 113.61246 * 220.01717 * 28 27 26
51 51 H 1.08998 * 113.62086 * 89.11605 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0323 -0.7105 1.2304
5 8 2.7295 -1.6966 1.1191
6 7 1.7068 -0.2501 2.4546
7 6 2.1947 -0.9411 3.6507
8 6 1.6930 -0.2302 4.8811
9 6 0.5853 -0.5344 5.5971
10 7 0.5337 0.3608 6.6104
11 6 -0.4951 0.4206 7.6516
12 6 -1.3796 -0.8375 7.7218
13 7 -2.5130 0.0943 7.9000
14 6 -3.7553 -0.0041 8.4676
15 1 -4.4167 0.8498 8.4708
16 6 -4.1646 -1.2012 9.0388
17 7 -3.3588 -2.2419 9.0344
18 14 -5.8590 -1.3351 9.8137
19 1 -6.8387 -1.7763 8.7886
20 1 -5.8206 -2.3250 10.9199
21 1 -6.2649 -0.0106 10.3485
22 6 -1.7677 1.1733 7.2230
23 7 1.5438 1.1513 6.5021
24 7 2.2534 0.8269 5.4794
25 6 2.0400 -0.7213 -1.2492
26 6 3.4973 -0.3826 -1.6043
27 6 3.0525 -0.3671 -3.0763
28 6 1.6418 -0.0312 -2.5646
29 1 -0.3633 0.5139 0.8901
30 1 -0.3633 0.5140 -0.8899
31 1 -0.3634 -1.0275 -0.0005
32 1 3.1236 1.4446 0.1190
33 1 1.7772 1.9208 -0.9435
34 1 1.5828 1.9895 0.8245
35 1 1.1494 0.5388 2.5435
36 1 3.2847 -0.9415 3.6509
37 1 1.8309 -1.9685 3.6505
38 1 -0.1141 -1.3337 5.4016
39 1 -0.1034 0.7361 8.6186
40 1 -1.4166 -1.4012 6.7896
41 1 -1.1837 -1.4642 8.5918
42 1 -3.6449 -3.0784 9.4333
43 1 -1.8812 2.1490 7.6954
44 1 -1.9179 1.2032 6.1438
45 1 1.8295 -1.7908 -1.2361
46 1 3.8217 0.5906 -1.2359
47 1 4.2009 -1.1813 -1.3692
48 1 3.1202 -1.3400 -3.5632
49 1 3.5067 0.4327 -3.6613
50 1 0.8474 -0.5462 -3.1048
51 1 1.4588 1.0381 -2.4587
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001107189918.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:46:18
Heat of formation + Delta-G solvation = 133.401345 kcal
Electronic energy + Delta-G solvation = -30437.568341 eV
Core-core repulsion = 26376.799028 eV
Total energy + Delta-G solvation = -4060.769312 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-43.09391 -40.84625 -38.62543 -38.35660 -35.22706 -34.34866 -33.36274 -31.97668
-31.11769 -28.00164 -27.87779 -26.89616 -25.99993 -25.49295 -25.29618 -24.41834
-22.91859 -21.95291 -21.10353 -20.23549 -19.65265 -18.72694 -17.60499 -17.16115
-16.66914 -16.52880 -15.92079 -15.54886 -15.36382 -15.14873 -14.99324 -14.70425
-14.33339 -14.12220 -13.68162 -13.50550 -13.22593 -13.04166 -12.95780 -12.80548
-12.46185 -12.23461 -12.14958 -12.11190 -11.92748 -11.86878 -11.62184 -11.43131
-11.39347 -11.20890 -10.98968 -10.97078 -10.61745 -10.56187 -10.52789 -10.30526
-10.26195 -9.92992 -9.81106 -9.57342 -9.14407 -9.11813 -9.04993 -7.29033
-6.07553 -3.43079 1.79422 2.42158 2.58904 2.61702 3.24238 3.29586
3.31535 3.33416 4.19457 4.25417 4.32618 4.35509 4.38343 4.59871
4.67453 4.68970 4.71127 4.77469 4.89719 4.95982 5.02578 5.13022
5.17746 5.25029 5.37718 5.40436 5.43715 5.46220 5.51276 5.55515
5.59317 5.62648 5.66593 5.70942 5.74261 5.82014 5.87856 5.96302
6.02162 6.06679 6.07846 6.13858 6.27109 6.29550 6.33031 6.50857
6.76639 7.00182 7.13354 7.41743 7.64750 8.14482 8.71249 8.72796
9.38912 10.16164 11.09678
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.016272 B = 0.002027 C = 0.001910
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1720.316242 B =13812.061288 C =14655.781689
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.071 4.071
3 C -0.146 4.146
4 C 0.525 3.475
5 O -0.538 6.538
6 N -0.722 5.722
7 C 0.215 3.785
8 C -0.062 4.062
9 C -0.015 4.015
10 N -0.265 5.265
11 C 0.077 3.923
12 C 0.164 3.836
13 N -0.598 5.598
14 C -0.233 4.233
15 H 0.087 0.913
16 C -0.001 4.001
17 N -0.919 5.919
18 Si 0.920 3.080
19 H -0.286 1.286
20 H -0.287 1.287
21 H -0.278 1.278
22 C 0.120 3.880
23 N -0.089 5.089
24 N -0.267 5.267
25 C -0.083 4.083
26 C -0.138 4.138
27 C -0.143 4.143
28 C -0.139 4.139
29 H 0.060 0.940
30 H 0.068 0.932
31 H 0.062 0.938
32 H 0.065 0.935
33 H 0.070 0.930
34 H 0.061 0.939
35 H 0.401 0.599
36 H 0.083 0.917
37 H 0.085 0.915
38 H 0.190 0.810
39 H 0.132 0.868
40 H 0.041 0.959
41 H 0.092 0.908
42 H 0.259 0.741
43 H 0.062 0.938
44 H 0.042 0.958
45 H 0.096 0.904
46 H 0.084 0.916
47 H 0.068 0.932
48 H 0.078 0.922
49 H 0.065 0.935
50 H 0.065 0.935
51 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.544 4.687 -19.299 22.034
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.075 4.075
3 C -0.203 4.203
4 C 0.311 3.689
5 O -0.415 6.415
6 N -0.374 5.374
7 C 0.090 3.910
8 C -0.201 4.201
9 C -0.169 4.169
10 N -0.057 5.057
11 C -0.025 4.025
12 C 0.037 3.963
13 N -0.325 5.325
14 C -0.359 4.359
15 H 0.105 0.895
16 C -0.199 4.199
17 N -0.565 5.565
18 Si 0.749 3.251
19 H -0.213 1.213
20 H -0.213 1.213
21 H -0.203 1.203
22 C -0.007 4.007
23 N -0.068 5.068
24 N -0.134 5.134
25 C -0.101 4.101
26 C -0.175 4.175
27 C -0.181 4.181
28 C -0.176 4.176
29 H 0.079 0.921
30 H 0.087 0.913
31 H 0.081 0.919
32 H 0.084 0.916
33 H 0.089 0.911
34 H 0.080 0.920
35 H 0.236 0.764
36 H 0.101 0.899
37 H 0.103 0.897
38 H 0.207 0.793
39 H 0.150 0.850
40 H 0.059 0.941
41 H 0.110 0.890
42 H 0.069 0.931
43 H 0.080 0.920
44 H 0.060 0.940
45 H 0.114 0.886
46 H 0.102 0.898
47 H 0.087 0.913
48 H 0.096 0.904
49 H 0.083 0.917
50 H 0.084 0.916
51 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 10.498 5.028 -18.511 21.867
hybrid contribution -1.930 -0.746 0.227 2.082
sum 8.568 4.282 -18.284 20.641
Atomic orbital electron populations
1.21842 0.92361 1.02851 1.02763 1.20723 0.97154 0.96434 0.93158
1.22017 1.01822 0.93606 1.02861 1.20517 0.79870 0.84324 0.84194
1.90688 1.37750 1.26286 1.86752 1.46078 1.53881 1.32242 1.05232
1.19271 0.99487 0.94126 0.78146 1.21738 0.96815 0.99837 1.01721
1.23504 1.01781 0.99681 0.91948 1.47908 1.18512 1.19211 1.20093
1.25284 0.83410 1.04608 0.89185 1.22746 0.82157 0.90234 1.01175
1.45671 1.14426 1.07812 1.64585 1.18999 0.89059 0.97490 1.30397
0.89489 1.24858 0.98944 0.95452 1.00618 1.69760 1.35881 1.02088
1.48738 0.86011 0.82759 0.77671 0.78664 1.21271 1.21347 1.20325
1.22924 0.86626 0.94359 0.96806 1.78272 0.96493 1.16444 1.15596
1.75021 1.22800 1.12386 1.03188 1.22356 0.96425 0.99887 0.91466
1.23031 0.96624 1.02279 0.95561 1.22793 0.96871 1.01641 0.96749
1.23051 0.97164 1.00919 0.96446 0.92067 0.91266 0.91922 0.91633
0.91075 0.92021 0.76408 0.89867 0.89727 0.79260 0.85038 0.94105
0.89023 0.93077 0.91975 0.93997 0.88588 0.89792 0.91282 0.90377
0.91668 0.91574 0.89787
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.05 8.20 37.16 0.30 -0.75 16
2 C -0.07 -0.61 0.53 -155.66 -0.08 -0.69 16
3 C -0.15 -1.06 7.31 37.16 0.27 -0.79 16
4 C 0.52 6.02 6.44 -10.98 -0.07 5.95 16
5 O -0.54 -7.97 15.80 5.55 0.09 -7.88 16
6 N -0.72 -7.82 5.34 -61.48 -0.33 -8.14 16
7 C 0.21 2.58 6.23 -5.20 -0.03 2.54 16
8 C -0.06 -0.87 6.62 -82.78 -0.55 -1.41 16
9 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16
10 N -0.26 -4.25 3.54 -56.31 -0.20 -4.45 16
11 C 0.08 1.31 5.14 -70.16 -0.36 0.95 16
12 C 0.16 3.31 6.90 -2.84 -0.02 3.29 16
13 N -0.60 -13.63 3.70 -177.90 -0.66 -14.29 16
14 C -0.23 -5.93 10.70 -15.06 -0.16 -6.09 16
15 H 0.09 2.14 7.83 -52.48 -0.41 1.73 16
16 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16
17 N -0.92 -24.92 11.39 55.49 0.63 -24.29 16
18 Si 0.92 20.55 29.55 -169.99 -5.02 15.52 16
19 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16
20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16
21 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16
22 C 0.12 2.18 8.74 -2.97 -0.03 2.16 16
23 N -0.09 -1.53 13.16 60.35 0.79 -0.74 16
24 N -0.27 -4.39 12.41 33.29 0.41 -3.98 16
25 C -0.08 -0.72 2.44 -89.81 -0.22 -0.93 16
26 C -0.14 -1.18 7.18 -25.92 -0.19 -1.37 16
27 C -0.14 -1.00 8.08 -25.92 -0.21 -1.21 16
28 C -0.14 -0.93 6.62 -25.92 -0.17 -1.11 16
29 H 0.06 0.44 7.57 -51.92 -0.39 0.05 16
30 H 0.07 0.43 7.54 -51.93 -0.39 0.04 16
31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
32 H 0.06 0.52 6.47 -51.93 -0.34 0.18 16
33 H 0.07 0.42 6.08 -51.93 -0.32 0.11 16
34 H 0.06 0.43 7.75 -51.93 -0.40 0.02 16
35 H 0.40 3.92 7.43 -40.82 -0.30 3.62 16
36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16
37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
38 H 0.19 2.41 6.73 -52.49 -0.35 2.05 16
39 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16
40 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16
41 H 0.09 2.07 7.17 -51.93 -0.37 1.70 16
42 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16
43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16
44 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16
45 H 0.10 0.98 7.96 -51.93 -0.41 0.56 16
46 H 0.08 0.68 5.68 -51.93 -0.29 0.38 16
47 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16
48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
49 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
50 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
51 H 0.08 0.50 6.13 -51.93 -0.32 0.18 16
LS Contribution 403.95 15.07 6.09 6.09
Total: -1.00 -29.98 403.95 -7.98 -37.96
By element:
Atomic # 1 Polarization: 12.18 SS G_CDS: -8.00 Total: 4.19 kcal
Atomic # 6 Polarization: 1.81 SS G_CDS: -1.79 Total: 0.02 kcal
Atomic # 7 Polarization: -56.55 SS G_CDS: 0.65 Total: -55.89 kcal
Atomic # 8 Polarization: -7.97 SS G_CDS: 0.09 Total: -7.88 kcal
Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -29.98 -7.98 -37.96 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001107189918.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 171.359 kcal
(2) G-P(sol) polarization free energy of solvation -29.977 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.382 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal
(6) G-S(sol) free energy of system = (1) + (5) 133.401 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.20 seconds