Wall clock time and date at job start Wed Apr 1 2020 04:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47470 * 2 1 4 4 C 1.50702 * 109.47162 * 120.00336 * 2 1 3 5 5 O 1.21284 * 119.99890 * 119.99391 * 4 2 1 6 6 N 1.34781 * 120.00056 * 299.99792 * 4 2 1 7 7 C 1.46497 * 120.00007 * 179.97438 * 6 4 2 8 8 C 1.50696 * 109.46724 * 179.97438 * 7 6 4 9 9 C 1.35354 * 126.75046 * 95.00766 * 8 7 6 10 10 N 1.35312 * 106.17896 * 179.77314 * 9 8 7 11 11 C 1.46495 * 125.87211 * 180.20122 * 10 9 8 12 12 C 1.53947 * 113.73960 * 13.74105 * 11 10 9 13 13 N 1.47807 * 86.03553 * 222.08120 * 12 11 10 14 14 C 1.36938 * 134.45499 * 204.64050 * 13 12 11 15 15 H 1.08004 * 119.99910 * 179.86994 * 14 13 12 16 16 C 1.38809 * 120.00304 * 359.87363 * 14 13 12 17 17 N 1.31624 * 119.99737 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00186 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47078 * 89.99619 * 18 16 14 20 20 H 1.48494 * 109.47206 * 209.99526 * 18 16 14 21 21 H 1.48499 * 109.47191 * 330.00002 * 18 16 14 22 22 C 1.47581 * 91.05036 * 24.54907 * 13 12 11 23 23 N 1.28716 * 108.26109 * 0.22378 * 10 9 8 24 24 N 1.28635 * 110.18127 * 359.97438 * 23 10 9 25 25 C 1.53003 * 109.47115 * 239.99856 * 2 1 3 26 26 C 1.53774 * 113.61573 * 160.47737 * 25 2 1 27 27 C 1.53784 * 87.08248 * 220.02190 * 26 25 2 28 28 C 1.53776 * 87.07933 * 25.43561 * 27 26 25 29 29 H 1.09010 * 109.46654 * 300.00066 * 1 2 3 30 30 H 1.09003 * 109.47034 * 59.99117 * 1 2 3 31 31 H 1.08992 * 109.47655 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46958 * 173.34897 * 3 2 1 33 33 H 1.09000 * 109.47260 * 293.34821 * 3 2 1 34 34 H 1.09003 * 109.47037 * 53.35092 * 3 2 1 35 35 H 0.97000 * 119.99157 * 359.97438 * 6 4 2 36 36 H 1.09004 * 109.47063 * 60.00509 * 7 6 4 37 37 H 1.08992 * 109.47285 * 299.99807 * 7 6 4 38 38 H 1.07998 * 126.90871 * 0.02997 * 9 8 7 39 39 H 1.09001 * 112.94753 * 145.33153 * 11 10 9 40 40 H 1.09000 * 113.76961 * 336.34831 * 12 11 10 41 41 H 1.09002 * 113.76709 * 107.74661 * 12 11 10 42 42 H 0.96992 * 119.99642 * 180.02562 * 17 16 14 43 43 H 1.08998 * 113.76729 * 221.14520 * 22 13 12 44 44 H 1.08999 * 113.87086 * 89.76445 * 22 13 12 45 45 H 1.09005 * 112.85139 * 291.79035 * 25 2 1 46 46 H 1.09000 * 113.61915 * 334.57294 * 26 25 2 47 47 H 1.09005 * 113.61232 * 105.47508 * 26 25 2 48 48 H 1.08998 * 113.61217 * 270.88746 * 27 26 25 49 49 H 1.09004 * 113.61378 * 139.98360 * 27 26 25 50 50 H 1.09000 * 113.61246 * 220.01717 * 28 27 26 51 51 H 1.08998 * 113.62086 * 89.11605 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1191 6 7 1.7068 -0.2501 2.4546 7 6 2.1947 -0.9411 3.6507 8 6 1.6930 -0.2302 4.8811 9 6 0.5853 -0.5344 5.5971 10 7 0.5337 0.3608 6.6104 11 6 -0.4951 0.4206 7.6516 12 6 -1.3796 -0.8375 7.7218 13 7 -2.5130 0.0943 7.9000 14 6 -3.7553 -0.0041 8.4676 15 1 -4.4167 0.8498 8.4708 16 6 -4.1646 -1.2012 9.0388 17 7 -3.3588 -2.2419 9.0344 18 14 -5.8590 -1.3351 9.8137 19 1 -6.8387 -1.7763 8.7886 20 1 -5.8206 -2.3250 10.9199 21 1 -6.2649 -0.0106 10.3485 22 6 -1.7677 1.1733 7.2230 23 7 1.5438 1.1513 6.5021 24 7 2.2534 0.8269 5.4794 25 6 2.0400 -0.7213 -1.2492 26 6 3.4973 -0.3826 -1.6043 27 6 3.0525 -0.3671 -3.0763 28 6 1.6418 -0.0312 -2.5646 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0275 -0.0005 32 1 3.1236 1.4446 0.1190 33 1 1.7772 1.9208 -0.9435 34 1 1.5828 1.9895 0.8245 35 1 1.1494 0.5388 2.5435 36 1 3.2847 -0.9415 3.6509 37 1 1.8309 -1.9685 3.6505 38 1 -0.1141 -1.3337 5.4016 39 1 -0.1034 0.7361 8.6186 40 1 -1.4166 -1.4012 6.7896 41 1 -1.1837 -1.4642 8.5918 42 1 -3.6449 -3.0784 9.4333 43 1 -1.8812 2.1490 7.6954 44 1 -1.9179 1.2032 6.1438 45 1 1.8295 -1.7908 -1.2361 46 1 3.8217 0.5906 -1.2359 47 1 4.2009 -1.1813 -1.3692 48 1 3.1202 -1.3400 -3.5632 49 1 3.5067 0.4327 -3.6613 50 1 0.8474 -0.5462 -3.1048 51 1 1.4588 1.0381 -2.4587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107189918.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:17 Heat of formation + Delta-G solvation = 115.388427 kcal Electronic energy + Delta-G solvation = -30438.349440 eV Core-core repulsion = 26376.799028 eV Total energy + Delta-G solvation = -4061.550411 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.36068 -41.62967 -39.96228 -39.36381 -36.28861 -35.18407 -34.78990 -33.61039 -32.26702 -29.71327 -28.46137 -27.98806 -26.83751 -26.61249 -26.10197 -26.00612 -23.75811 -23.40735 -22.30520 -21.13952 -21.03130 -19.47505 -19.00642 -18.43671 -17.82337 -17.56565 -17.03072 -16.97290 -16.36458 -16.25459 -15.94127 -15.75729 -15.67036 -15.23247 -14.81759 -14.52830 -14.45996 -14.03937 -13.79051 -13.65495 -13.61468 -13.49650 -13.39904 -13.08743 -12.97654 -12.79461 -12.76066 -12.62658 -12.51197 -12.43609 -12.26004 -12.11196 -12.02372 -11.80083 -11.72389 -11.23744 -11.22818 -11.04714 -10.91825 -10.90163 -10.71607 -10.22220 -10.10738 -9.11085 -8.01147 -5.36416 0.55928 1.23725 1.28581 1.48466 1.49856 1.57412 1.68255 2.39045 2.43070 3.07127 3.11373 3.31072 3.33193 3.55648 3.70245 3.71528 3.75519 3.91206 3.97541 4.00513 4.04687 4.15108 4.16303 4.30226 4.37653 4.48504 4.56581 4.59253 4.68713 4.70856 4.83795 4.85831 4.88952 4.91502 4.97956 5.00226 5.01222 5.04524 5.07754 5.09647 5.15253 5.20675 5.29268 5.34852 5.36480 5.36720 5.46211 5.65601 5.70431 5.77115 6.53140 6.80207 7.24229 7.45134 7.48757 8.33525 9.15625 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016272 B = 0.002027 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.316242 B =13812.061288 C =14655.781689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.144 4.144 4 C 0.522 3.478 5 O -0.576 6.576 6 N -0.715 5.715 7 C 0.219 3.781 8 C -0.048 4.048 9 C -0.014 4.014 10 N -0.268 5.268 11 C 0.104 3.896 12 C 0.165 3.835 13 N -0.627 5.627 14 C -0.237 4.237 15 H 0.092 0.908 16 C -0.057 4.057 17 N -0.949 5.949 18 Si 0.979 3.021 19 H -0.286 1.286 20 H -0.295 1.295 21 H -0.267 1.267 22 C 0.126 3.874 23 N -0.107 5.107 24 N -0.280 5.280 25 C -0.089 4.089 26 C -0.144 4.144 27 C -0.139 4.139 28 C -0.127 4.127 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.409 0.591 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.206 0.794 39 H 0.138 0.862 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.253 0.747 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.045 0.955 48 H 0.076 0.924 49 H 0.077 0.923 50 H 0.072 0.928 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.866 6.355 -20.745 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 C -0.201 4.201 4 C 0.310 3.690 5 O -0.455 6.455 6 N -0.367 5.367 7 C 0.093 3.907 8 C -0.187 4.187 9 C -0.167 4.167 10 N -0.060 5.060 11 C 0.002 3.998 12 C 0.039 3.961 13 N -0.355 5.355 14 C -0.365 4.365 15 H 0.109 0.891 16 C -0.251 4.251 17 N -0.596 5.596 18 Si 0.807 3.193 19 H -0.213 1.213 20 H -0.222 1.222 21 H -0.192 1.192 22 C 0.000 4.000 23 N -0.086 5.086 24 N -0.147 5.147 25 C -0.108 4.108 26 C -0.181 4.181 27 C -0.176 4.176 28 C -0.164 4.164 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.245 0.755 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.223 0.777 39 H 0.156 0.844 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.108 0.892 47 H 0.064 0.936 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.091 0.909 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.830 6.752 -19.973 23.262 hybrid contribution -1.617 -1.263 0.615 2.142 sum 8.214 5.489 -19.358 21.733 Atomic orbital electron populations 1.21855 0.91224 1.02600 1.03947 1.20734 0.97919 0.96845 0.91360 1.22030 1.01273 0.92560 1.04225 1.21120 0.79070 0.83858 0.84984 1.90674 1.39532 1.28077 1.87263 1.46008 1.53652 1.32282 1.04785 1.19228 0.99128 0.94408 0.77910 1.21904 0.96200 0.98890 1.01756 1.23815 1.02108 0.99554 0.91239 1.47711 1.18326 1.19757 1.20252 1.24698 0.83340 1.02099 0.89644 1.22615 0.82491 0.90878 1.00151 1.45906 1.14319 1.09951 1.65275 1.19339 0.90174 0.97462 1.29523 0.89077 1.25605 1.02105 0.95487 1.01873 1.69916 1.37274 1.02264 1.50176 0.85070 0.79091 0.77660 0.77446 1.21293 1.22170 1.19169 1.23014 0.85924 0.93982 0.97097 1.78279 0.96932 1.17137 1.16235 1.75010 1.23035 1.13296 1.03351 1.22345 0.96727 0.99004 0.92716 1.23073 0.96164 1.01749 0.97121 1.22784 0.97069 1.02088 0.95699 1.23027 0.97081 1.01579 0.94696 0.91565 0.89405 0.92911 0.92472 0.89109 0.91427 0.75537 0.90511 0.88945 0.77691 0.84427 0.93552 0.91841 0.93810 0.90557 0.92816 0.90751 0.89184 0.93562 0.90554 0.90407 0.90894 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.20 71.98 0.59 -1.20 16 2 C -0.07 -1.03 0.53 -52.93 -0.03 -1.06 16 3 C -0.14 -1.76 7.31 71.98 0.53 -1.24 16 4 C 0.52 11.70 6.44 87.66 0.56 12.26 16 5 O -0.58 -17.33 15.80 -3.04 -0.05 -17.37 16 6 N -0.72 -14.66 5.34 -466.79 -2.49 -17.16 16 7 C 0.22 5.04 6.23 85.63 0.53 5.57 16 8 C -0.05 -1.28 6.62 41.60 0.28 -1.00 16 9 C -0.01 -0.38 10.72 83.49 0.89 0.52 16 10 N -0.27 -8.20 3.54 -332.07 -1.18 -9.38 16 11 C 0.10 3.42 5.14 46.75 0.24 3.66 16 12 C 0.17 6.64 6.90 86.44 0.60 7.24 16 13 N -0.63 -28.11 3.70 -716.76 -2.65 -30.77 16 14 C -0.24 -11.96 10.70 84.03 0.90 -11.06 16 15 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 16 C -0.06 -2.95 5.50 84.86 0.47 -2.48 16 17 N -0.95 -52.13 11.39 21.65 0.25 -51.89 16 18 Si 0.98 42.19 29.55 68.60 2.03 44.22 16 19 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.30 -12.95 7.11 99.48 0.71 -12.25 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 22 C 0.13 4.35 8.74 86.48 0.76 5.10 16 23 N -0.11 -3.54 13.16 37.02 0.49 -3.05 16 24 N -0.28 -8.84 12.41 -48.60 -0.60 -9.44 16 25 C -0.09 -1.47 2.44 -10.27 -0.03 -1.50 16 26 C -0.14 -2.41 7.18 31.12 0.22 -2.18 16 27 C -0.14 -1.74 8.08 31.12 0.25 -1.49 16 28 C -0.13 -1.42 6.62 31.12 0.21 -1.22 16 29 H 0.07 0.79 7.57 -2.38 -0.02 0.77 16 30 H 0.09 0.82 7.54 -2.39 -0.02 0.81 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.81 6.47 -2.38 -0.02 0.80 16 33 H 0.09 0.77 6.08 -2.39 -0.01 0.76 16 34 H 0.07 0.76 7.75 -2.39 -0.02 0.74 16 35 H 0.41 7.24 7.43 -92.71 -0.69 6.55 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.21 4.84 6.73 -2.91 -0.02 4.82 16 39 H 0.14 4.38 8.14 -2.39 -0.02 4.36 16 40 H 0.05 1.81 6.31 -2.39 -0.02 1.79 16 41 H 0.06 2.92 7.17 -2.39 -0.02 2.91 16 42 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 43 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.07 1.55 7.96 -2.38 -0.02 1.53 16 46 H 0.09 1.37 5.68 -2.39 -0.01 1.36 16 47 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 48 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.10 0.83 6.13 -2.39 -0.01 0.81 16 Total: -1.00 -64.40 403.95 3.02 -61.39 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.26 Total: 23.53 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 6.97 Total: 9.92 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -6.19 Total: -121.68 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.05 Total: -17.37 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -64.40 3.02 -61.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107189918.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.777 kcal (2) G-P(sol) polarization free energy of solvation -64.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds