Wall clock time and date at job start Wed Apr 1 2020 04:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46941 * 2 1 4 4 C 1.53004 * 109.47299 * 175.19396 * 3 2 1 5 5 C 1.50699 * 112.84954 * 293.81936 * 4 3 2 6 6 O 1.21286 * 119.99976 * 114.14382 * 5 4 3 7 7 N 1.34774 * 119.99644 * 294.13711 * 5 4 3 8 8 C 1.46509 * 119.99623 * 174.94806 * 7 5 4 9 9 C 1.50699 * 109.46770 * 180.02562 * 8 7 5 10 10 C 1.35349 * 126.75431 * 94.71192 * 9 8 7 11 11 N 1.35314 * 106.17643 * 179.85122 * 10 9 8 12 12 C 1.46492 * 125.86844 * 180.18891 * 11 10 9 13 13 C 1.53948 * 113.74443 * 14.03757 * 12 11 10 14 14 N 1.47813 * 86.03906 * 222.08624 * 13 12 11 15 15 C 1.36937 * 134.45708 * 204.64664 * 14 13 12 16 16 H 1.08001 * 120.00105 * 184.58581 * 15 14 13 17 17 C 1.38813 * 120.00094 * 4.58670 * 15 14 13 18 18 N 1.31623 * 119.99807 * 5.39708 * 17 15 14 19 19 Si 1.86800 * 120.00044 * 185.39662 * 17 15 14 20 20 H 1.48498 * 109.47050 * 94.99194 * 19 17 15 21 21 H 1.48502 * 109.46747 * 214.99149 * 19 17 15 22 22 H 1.48497 * 109.46981 * 334.99272 * 19 17 15 23 23 C 1.47584 * 91.05112 * 24.54392 * 14 13 12 24 24 N 1.28712 * 108.26153 * 0.41604 * 11 10 9 25 25 N 1.28632 * 110.18035 * 359.74053 * 24 11 10 26 26 C 1.53774 * 113.61446 * 162.50553 * 4 3 2 27 27 C 1.53782 * 87.08391 * 220.02401 * 26 4 3 28 28 C 1.53778 * 87.07844 * 25.43355 * 27 26 4 29 29 H 1.08997 * 109.46729 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46964 * 299.99858 * 1 2 3 31 31 H 1.09004 * 109.46774 * 60.00136 * 1 2 3 32 32 H 1.08998 * 109.47299 * 240.00570 * 2 1 3 33 33 H 1.09002 * 109.47508 * 119.99937 * 2 1 3 34 34 H 1.08996 * 109.47295 * 295.19476 * 3 2 1 35 35 H 1.09002 * 109.46966 * 55.19669 * 3 2 1 36 36 H 0.96993 * 120.00518 * 354.95582 * 7 5 4 37 37 H 1.09000 * 109.46917 * 300.00074 * 8 7 5 38 38 H 1.09001 * 109.46907 * 60.00530 * 8 7 5 39 39 H 1.08004 * 126.90885 * 0.02562 * 10 9 8 40 40 H 1.09004 * 112.94713 * 145.62686 * 12 11 10 41 41 H 1.09005 * 113.76402 * 336.34747 * 13 12 11 42 42 H 1.09001 * 113.77305 * 107.74344 * 13 12 11 43 43 H 0.96992 * 119.99986 * 179.97438 * 18 17 15 44 44 H 1.08998 * 113.77093 * 221.15615 * 23 14 13 45 45 H 1.09003 * 113.86657 * 89.76675 * 23 14 13 46 46 H 1.09000 * 113.61955 * 334.56831 * 26 4 3 47 47 H 1.08999 * 113.61691 * 105.47578 * 26 4 3 48 48 H 1.09001 * 113.61686 * 270.88860 * 27 26 4 49 49 H 1.08996 * 113.62073 * 139.98264 * 27 26 4 50 50 H 1.09007 * 113.61753 * 220.01967 * 28 27 26 51 51 H 1.08997 * 113.61714 * 89.12096 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4443 0.1209 5 6 4.0476 0.9199 1.4487 6 8 4.6782 -0.1150 1.4991 7 7 3.7784 1.6008 2.5802 8 6 4.1499 1.0370 3.8804 9 6 3.7410 1.9880 4.9756 10 6 2.5912 1.9556 5.6888 11 7 2.6569 2.9914 6.5571 12 6 1.6334 3.3530 7.5409 13 6 0.5780 2.2557 7.7692 14 7 -0.4136 3.3520 7.7652 15 6 -1.6645 3.5156 8.2976 16 1 -2.2286 4.4119 8.0858 17 6 -2.2077 2.5294 9.1096 18 7 -1.4816 1.4871 9.4544 19 14 -3.9691 2.6815 9.7128 20 1 -4.8707 1.9314 8.8021 21 1 -4.0727 2.1211 11.0842 22 1 -4.3639 4.1129 9.7318 23 6 0.4867 4.1998 6.9597 24 7 3.7709 3.6073 6.3667 25 7 4.4406 3.0338 5.4300 26 6 4.2142 2.7765 -0.2901 27 6 5.3178 1.9417 -0.9608 28 6 4.2795 0.8144 -1.0866 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.7487 1.9309 -0.9299 35 1 1.6080 1.9806 0.8439 36 1 3.3387 2.4641 2.5337 37 1 3.6429 0.0823 4.0206 38 1 5.2286 0.8842 3.9153 39 1 1.7849 1.2443 5.5875 40 1 2.0534 3.7564 8.4623 41 1 0.4734 1.5658 6.9318 42 1 0.6712 1.7495 8.7300 43 1 -1.8610 0.7982 10.0221 44 1 0.5071 5.2429 7.2755 45 1 0.3564 4.0836 5.8837 46 1 3.6158 3.3550 -0.9939 47 1 4.5670 3.3690 0.5540 48 1 6.1470 1.6993 -0.2960 49 1 5.6462 2.3419 -1.9200 50 1 4.6850 -0.1773 -0.8855 51 1 3.6989 0.8563 -2.0081 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107198086.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:21 Heat of formation + Delta-G solvation = 107.620027 kcal Electronic energy + Delta-G solvation = -30636.613782 eV Core-core repulsion = 26574.726508 eV Total energy + Delta-G solvation = -4061.887274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.36690 -41.77286 -39.95430 -38.67895 -36.31145 -35.18765 -34.94938 -33.66148 -32.48482 -29.78437 -29.63295 -27.95964 -26.84857 -26.51496 -26.02120 -24.83739 -23.43164 -22.88919 -22.28689 -21.87246 -21.14115 -20.21348 -19.02076 -18.31106 -17.57158 -17.45945 -16.98807 -16.89378 -16.72001 -16.12091 -15.94200 -15.76887 -15.62765 -15.25729 -14.85228 -14.58734 -14.44387 -14.25822 -14.05004 -13.69442 -13.57392 -13.43492 -13.32943 -13.19551 -13.03606 -12.94535 -12.79262 -12.62313 -12.47406 -12.44280 -12.09270 -12.01302 -11.81106 -11.80255 -11.73071 -11.60781 -11.10662 -11.04772 -10.99135 -10.94093 -10.82111 -10.27758 -10.13850 -9.09590 -8.00015 -5.37040 0.55679 1.22279 1.28540 1.48156 1.50019 1.57675 1.60968 2.35008 2.42523 3.06807 3.11075 3.29955 3.33271 3.41540 3.60467 3.71789 3.73182 3.90397 3.91914 3.98489 4.03879 4.14840 4.19863 4.30447 4.40552 4.47595 4.55338 4.58629 4.67956 4.71002 4.83145 4.84204 4.87973 4.90260 4.94227 4.98325 5.01070 5.04501 5.05789 5.12794 5.15576 5.19797 5.29059 5.34142 5.37243 5.39819 5.47362 5.49627 5.65347 5.78782 6.49518 6.79893 7.19687 7.44835 7.48938 8.33686 9.15152 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012373 B = 0.002404 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.423129 B =11646.625997 C =13039.319976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.094 4.094 4 C -0.108 4.108 5 C 0.541 3.459 6 O -0.576 6.576 7 N -0.714 5.714 8 C 0.219 3.781 9 C -0.049 4.049 10 C -0.013 4.013 11 N -0.268 5.268 12 C 0.105 3.895 13 C 0.158 3.842 14 N -0.627 5.627 15 C -0.237 4.237 16 H 0.090 0.910 17 C -0.056 4.056 18 N -0.946 5.946 19 Si 0.979 3.021 20 H -0.287 1.287 21 H -0.295 1.295 22 H -0.266 1.266 23 C 0.126 3.874 24 N -0.108 5.108 25 N -0.281 5.281 26 C -0.118 4.118 27 C -0.145 4.145 28 C -0.114 4.114 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.409 0.591 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.208 0.792 40 H 0.135 0.865 41 H 0.048 0.952 42 H 0.070 0.930 43 H 0.253 0.747 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.116 0.884 47 H 0.066 0.934 48 H 0.059 0.941 49 H 0.088 0.912 50 H 0.058 0.942 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.558 0.884 -20.872 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.131 4.131 4 C -0.111 4.111 5 C 0.328 3.672 6 O -0.455 6.455 7 N -0.365 5.365 8 C 0.094 3.906 9 C -0.188 4.188 10 C -0.166 4.166 11 N -0.060 5.060 12 C 0.003 3.997 13 C 0.031 3.969 14 N -0.354 5.354 15 C -0.365 4.365 16 H 0.108 0.892 17 C -0.250 4.250 18 N -0.594 5.594 19 Si 0.807 3.193 20 H -0.214 1.214 21 H -0.222 1.222 22 H -0.191 1.191 23 C 0.000 4.000 24 N -0.086 5.086 25 N -0.148 5.148 26 C -0.155 4.155 27 C -0.183 4.183 28 C -0.152 4.152 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.245 0.755 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.224 0.776 40 H 0.153 0.847 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.134 0.866 47 H 0.085 0.915 48 H 0.078 0.922 49 H 0.107 0.893 50 H 0.077 0.923 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.609 1.285 -20.123 21.925 hybrid contribution -1.735 -0.816 0.746 2.057 sum 6.874 0.469 -19.377 20.565 Atomic orbital electron populations 1.21761 0.95113 1.01791 1.02170 1.21479 0.96238 0.96841 1.01483 1.21559 0.90396 0.97217 1.03965 1.22034 0.97418 0.99934 0.91749 1.20411 0.77825 0.83268 0.85676 1.90673 1.41384 1.25893 1.87591 1.45919 1.61756 1.23835 1.05012 1.19240 1.00939 0.92807 0.77617 1.21885 0.93742 0.99776 1.03407 1.23813 1.02370 0.95975 0.94436 1.47734 1.14259 1.19002 1.25012 1.24710 0.83459 1.00888 0.90669 1.22737 0.82585 0.90628 1.00946 1.45843 1.16058 1.13906 1.59559 1.19326 0.90258 1.03829 1.23067 0.89197 1.25597 1.02392 0.96959 1.00037 1.69918 1.36995 1.12188 1.40258 0.85062 0.79384 0.78057 0.76833 1.21428 1.22173 1.19077 1.23027 0.84935 0.96311 0.95707 1.78282 0.94157 1.20741 1.15461 1.75010 1.24973 1.07822 1.06958 1.23043 0.97309 0.94009 1.01135 1.22838 0.96625 0.97122 1.01668 1.22874 0.97170 0.98459 0.96692 0.92945 0.93201 0.91449 0.91404 0.94383 0.88503 0.91376 0.75501 0.88805 0.90510 0.77574 0.84690 0.93440 0.91227 0.93809 0.90763 0.92575 0.86554 0.91545 0.92194 0.89314 0.92312 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 71.98 0.71 -1.49 16 2 C -0.12 -1.95 5.64 30.60 0.17 -1.78 16 3 C -0.09 -1.23 4.64 30.60 0.14 -1.09 16 4 C -0.11 -1.72 0.79 -52.40 -0.04 -1.76 16 5 C 0.54 12.19 5.63 87.66 0.49 12.69 16 6 O -0.58 -17.37 15.95 -3.05 -0.05 -17.42 16 7 N -0.71 -14.79 5.55 -466.77 -2.59 -17.38 16 8 C 0.22 5.05 6.24 85.63 0.53 5.59 16 9 C -0.05 -1.29 6.61 41.60 0.28 -1.02 16 10 C -0.01 -0.34 10.72 83.49 0.89 0.56 16 11 N -0.27 -8.21 3.54 -332.01 -1.18 -9.39 16 12 C 0.11 3.47 5.14 46.75 0.24 3.71 16 13 C 0.16 6.31 7.10 86.44 0.61 6.92 16 14 N -0.63 -28.04 3.70 -716.58 -2.65 -30.69 16 15 C -0.24 -11.93 10.69 84.03 0.90 -11.03 16 16 H 0.09 4.33 7.83 -2.91 -0.02 4.31 16 17 C -0.06 -2.88 5.50 84.86 0.47 -2.42 16 18 N -0.95 -51.82 11.30 21.65 0.24 -51.58 16 19 Si 0.98 42.09 29.56 68.60 2.03 44.12 16 20 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.30 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 C 0.13 4.37 8.74 86.49 0.76 5.12 16 24 N -0.11 -3.58 13.16 37.02 0.49 -3.09 16 25 N -0.28 -8.93 12.41 -48.60 -0.60 -9.54 16 26 C -0.12 -1.47 7.22 31.12 0.22 -1.25 16 27 C -0.15 -2.09 7.81 31.12 0.24 -1.85 16 28 C -0.11 -1.74 6.46 31.12 0.20 -1.54 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.07 1.02 7.76 -2.39 -0.02 1.00 16 33 H 0.04 0.78 7.46 -2.39 -0.02 0.77 16 34 H 0.10 0.88 8.05 -2.39 -0.02 0.86 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.41 7.43 8.47 -92.71 -0.79 6.64 16 37 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.21 4.75 6.74 -2.91 -0.02 4.73 16 40 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16 41 H 0.05 1.81 6.31 -2.38 -0.02 1.79 16 42 H 0.07 3.23 6.87 -2.39 -0.02 3.21 16 43 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 44 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.12 0.92 8.04 -2.39 -0.02 0.91 16 47 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 48 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.06 1.20 7.34 -2.38 -0.02 1.18 16 51 H 0.11 1.16 8.10 -2.39 -0.02 1.14 16 Total: -1.00 -64.22 414.25 2.67 -61.55 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.15 Total: 24.05 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 6.83 Total: 9.36 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -6.28 Total: -121.66 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.05 Total: -17.42 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -64.22 2.67 -61.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107198086.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.172 kcal (2) G-P(sol) polarization free energy of solvation -64.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds