Wall clock time and date at job start Wed Apr 1 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47224 * 2 1 4 4 N 1.46500 * 109.46887 * 179.97438 * 3 2 1 5 5 C 1.34818 * 126.59002 * 125.28005 * 4 3 2 6 6 C 1.36596 * 106.84024 * 180.15178 * 5 4 3 7 7 C 1.47523 * 125.77364 * 179.89758 * 6 5 4 8 8 O 1.21594 * 119.99936 * 359.71147 * 7 6 5 9 9 N 1.34771 * 119.99934 * 179.71015 * 7 6 5 10 10 C 1.48116 * 127.84490 * 0.02562 * 9 7 6 11 11 C 1.54334 * 104.69258 * 219.73856 * 10 9 7 12 12 H 1.09002 * 111.85310 * 214.57529 * 11 10 9 13 13 C 1.54164 * 109.66054 * 89.92176 * 11 10 9 14 14 C 1.53956 * 104.75521 * 224.70569 * 13 11 10 15 15 C 1.54841 * 103.15006 * 37.00293 * 14 13 11 16 16 C 1.54163 * 104.32831 * 322.50830 * 15 14 13 17 17 C 1.53001 * 111.82502 * 261.25170 * 16 15 14 18 18 N 1.46497 * 109.46908 * 299.25844 * 17 16 15 19 19 C 1.36942 * 119.99920 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99931 * 0.02562 * 19 18 17 21 21 C 1.38807 * 119.99976 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00346 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99886 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47038 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46909 * 120.00173 * 23 21 19 26 26 H 1.48496 * 109.47210 * 239.99875 * 23 21 19 27 27 C 1.48120 * 127.84224 * 179.97438 * 9 7 6 28 28 N 1.34405 * 108.45375 * 359.62962 * 6 5 4 29 29 N 1.28757 * 109.52578 * 0.22601 * 28 6 5 30 30 H 1.09001 * 109.47643 * 299.99676 * 1 2 3 31 31 H 1.09009 * 109.47076 * 59.99741 * 1 2 3 32 32 H 1.09007 * 109.47420 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47049 * 239.99858 * 2 1 3 34 34 H 1.08997 * 109.46789 * 120.00582 * 2 1 3 35 35 H 1.09007 * 109.46623 * 60.00360 * 3 2 1 36 36 H 1.08994 * 109.47497 * 300.00474 * 3 2 1 37 37 H 1.08001 * 126.58129 * 0.02562 * 5 4 3 38 38 H 1.09002 * 110.39535 * 100.93932 * 10 9 7 39 39 H 1.08999 * 110.39511 * 338.54208 * 10 9 7 40 40 H 1.09003 * 110.45976 * 342.13643 * 13 11 10 41 41 H 1.09003 * 110.45777 * 104.70713 * 13 11 10 42 42 H 1.08998 * 109.96129 * 278.83825 * 14 13 11 43 43 H 1.08995 * 111.16178 * 155.73528 * 14 13 11 44 44 H 1.09002 * 110.46568 * 203.79892 * 15 14 13 45 45 H 1.08996 * 110.46393 * 81.22255 * 15 14 13 46 46 H 1.09005 * 109.46847 * 59.25544 * 17 16 15 47 47 H 1.08995 * 109.47361 * 179.25743 * 17 16 15 48 48 H 0.97001 * 120.00083 * 359.97438 * 18 17 16 49 49 H 0.97001 * 120.00317 * 179.97438 * 22 21 19 50 50 H 1.09003 * 110.39272 * 21.46003 * 27 9 7 51 51 H 1.09000 * 110.49382 * 259.11056 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3090 2.0674 -0.8828 6 6 5.5944 1.7980 -0.5074 7 6 6.8109 2.2773 -1.1907 8 8 6.7164 2.9731 -2.1834 9 7 8.0268 1.9441 -0.7145 10 6 8.3424 1.1131 0.4703 11 6 9.5469 1.8158 1.1316 12 1 10.2353 1.1015 1.5833 13 6 9.0443 2.8533 2.1552 14 6 9.9012 4.1059 1.8968 15 6 10.0668 4.1080 0.3573 16 6 10.2149 2.6187 -0.0126 17 6 11.6802 2.2240 -0.2076 18 7 12.2574 3.0131 -1.2986 19 6 13.5668 2.8319 -1.6562 20 1 14.1738 2.1070 -1.1342 21 6 14.1136 3.5792 -2.6903 22 7 13.3738 4.4623 -3.3267 23 14 15.8996 3.3316 -3.1786 24 1 16.5086 2.2880 -2.3153 25 1 15.9695 2.9017 -4.5983 26 1 16.6402 4.6077 -3.0108 27 6 9.3511 2.3248 -1.2579 28 7 5.5636 1.0271 0.5932 29 7 4.3405 0.7965 0.9228 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.6766 1.9562 0.8901 36 1 1.6766 1.9564 -0.8899 37 1 3.9967 2.6647 -1.7267 38 1 8.6132 0.1026 0.1643 39 1 7.4941 1.0893 1.1543 40 1 7.9966 3.0923 1.9723 41 1 9.1797 2.4826 3.1713 42 1 10.8682 4.0033 2.3892 43 1 9.3899 5.0084 2.2316 44 1 10.9606 4.6624 0.0709 45 1 9.1842 4.5333 -0.1204 46 1 12.2335 2.4158 0.7118 47 1 11.7412 1.1641 -0.4540 48 1 11.7121 3.6639 -1.7676 49 1 13.7560 4.9848 -4.0491 50 1 9.2647 3.2163 -1.8792 51 1 9.7788 1.5028 -1.8318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112552884.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:39 Heat of formation + Delta-G solvation = 72.324360 kcal Electronic energy + Delta-G solvation = -31124.317442 eV Core-core repulsion = 27060.899633 eV Total energy + Delta-G solvation = -4063.417809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.43774 -40.35273 -38.30370 -36.43012 -34.78771 -34.12794 -33.02803 -31.64834 -31.07014 -29.71813 -29.15746 -27.53820 -25.70723 -25.27738 -23.97831 -23.25753 -22.60338 -22.12853 -21.77190 -20.04986 -19.65300 -18.54994 -17.70109 -16.98692 -16.58225 -16.26030 -15.77213 -15.64246 -15.28794 -14.88779 -14.73104 -14.55996 -14.33065 -14.07236 -13.58530 -13.42374 -13.27913 -13.18084 -12.97846 -12.68995 -12.65429 -12.53457 -12.24992 -12.19019 -11.96380 -11.52855 -11.37286 -11.10759 -11.00811 -10.81500 -10.73396 -10.62923 -10.62339 -10.38831 -10.34477 -10.30809 -10.10499 -9.95414 -9.84119 -9.57191 -9.49416 -8.82382 -8.43427 -6.84987 -5.70078 -2.98586 0.90206 1.59530 1.71098 3.03538 3.31982 3.47638 3.53132 3.55460 3.82619 4.00175 4.13611 4.37117 4.48254 4.61137 4.62163 4.69936 4.74390 4.75327 4.85186 4.88622 4.95439 5.10075 5.31437 5.36671 5.45142 5.53236 5.54114 5.56572 5.58154 5.63317 5.66172 5.78310 5.82337 5.88543 6.05032 6.06481 6.08628 6.12941 6.16536 6.29205 6.35890 6.38272 6.46994 6.65174 6.65688 6.82406 6.86435 6.91137 7.64790 7.75803 7.76574 8.23905 8.48456 9.59917 10.17978 10.52792 11.52628 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021428 B = 0.002233 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.391784 B =12533.646281 C =13155.241298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.121 3.879 4 N -0.362 5.362 5 C 0.091 3.909 6 C -0.090 4.090 7 C 0.618 3.382 8 O -0.541 6.541 9 N -0.601 5.601 10 C 0.098 3.902 11 C -0.099 4.099 12 H 0.093 0.907 13 C -0.112 4.112 14 C -0.121 4.121 15 C -0.111 4.111 16 C -0.074 4.074 17 C 0.174 3.826 18 N -0.730 5.730 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.122 3.878 28 N -0.202 5.202 29 N -0.067 5.067 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.204 0.796 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.025 0.975 47 H 0.021 0.979 48 H 0.385 0.615 49 H 0.254 0.746 50 H 0.087 0.913 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.758 -7.090 10.565 29.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.000 4.000 4 N -0.147 5.147 5 C -0.066 4.066 6 C -0.229 4.229 7 C 0.404 3.596 8 O -0.418 6.418 9 N -0.333 5.333 10 C -0.025 4.025 11 C -0.118 4.118 12 H 0.111 0.889 13 C -0.150 4.150 14 C -0.159 4.159 15 C -0.149 4.149 16 C -0.075 4.075 17 C 0.047 3.953 18 N -0.375 5.375 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C 0.000 4.000 28 N -0.076 5.076 29 N -0.047 5.047 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.221 0.779 38 H 0.086 0.914 39 H 0.124 0.876 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.043 0.957 47 H 0.039 0.961 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.105 0.895 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.742 -7.633 11.230 29.992 hybrid contribution 0.639 0.700 -1.404 1.694 sum -26.103 -6.933 9.826 28.740 Atomic orbital electron populations 1.21707 0.93823 1.02910 1.02359 1.21831 0.96972 0.94547 1.04281 1.22160 0.72555 1.00110 1.05173 1.50536 1.08772 1.35111 1.20257 1.23376 0.90109 0.97083 0.96041 1.21466 0.94440 1.07905 0.99095 1.16266 0.80473 0.79825 0.82989 1.90834 1.85926 1.39171 1.25865 1.48658 1.04990 1.50280 1.29356 1.22790 0.98703 0.93555 0.87440 1.22747 0.96152 0.97443 0.95497 0.88874 1.22198 0.99448 0.95244 0.98063 1.22300 0.99725 0.97068 0.96780 1.22433 1.02355 0.95242 0.94872 1.22285 0.95965 0.95754 0.93513 1.20551 0.88230 0.94461 0.92105 1.42385 1.10677 1.46167 1.38273 1.19256 0.87580 1.17229 1.12795 0.91176 1.24727 0.98022 0.99185 0.99057 1.69670 1.35263 1.27346 1.25728 0.86143 0.85041 0.77158 0.78002 1.20621 1.21979 1.21979 1.22474 0.79751 1.01837 0.95924 1.74620 1.12367 1.10331 1.10266 1.81958 0.93559 1.17320 1.11911 0.92069 0.92201 0.91609 0.90996 0.89998 0.88338 0.87683 0.77901 0.91357 0.87643 0.92215 0.91822 0.91575 0.92201 0.89871 0.92216 0.95741 0.96124 0.78077 0.93603 0.89465 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.37 9.91 37.16 0.37 -0.01 16 2 C -0.14 -0.57 6.14 -26.73 -0.16 -0.74 16 3 C 0.12 0.50 6.54 -4.04 -0.03 0.47 16 4 N -0.36 -3.07 3.69 -61.06 -0.23 -3.29 16 5 C 0.09 0.88 11.27 -16.83 -0.19 0.69 16 6 C -0.09 -1.18 6.87 -83.55 -0.57 -1.76 16 7 C 0.62 9.95 7.91 -12.48 -0.10 9.85 16 8 O -0.54 -10.18 17.13 5.28 0.09 -10.09 16 9 N -0.60 -9.45 3.31 -170.62 -0.57 -10.01 16 10 C 0.10 1.32 6.00 -2.45 -0.01 1.31 16 11 C -0.10 -1.34 3.53 -88.30 -0.31 -1.65 16 12 H 0.09 1.17 7.88 -51.93 -0.41 0.76 16 13 C -0.11 -1.42 6.24 -25.62 -0.16 -1.58 16 14 C -0.12 -1.69 6.86 -25.26 -0.17 -1.87 16 15 C -0.11 -1.87 5.59 -25.15 -0.14 -2.01 16 16 C -0.07 -1.23 0.62 -152.16 -0.09 -1.32 16 17 C 0.17 3.47 5.19 -4.04 -0.02 3.45 16 18 N -0.73 -18.27 4.93 -59.91 -0.30 -18.56 16 19 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 23 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 C 0.12 2.14 5.49 -2.43 -0.01 2.13 16 28 N -0.20 -2.64 9.35 32.85 0.31 -2.34 16 29 N -0.07 -0.78 13.65 60.35 0.82 0.04 16 30 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.06 0.11 8.14 -51.92 -0.42 -0.31 16 32 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.18 8.08 -51.93 -0.42 -0.24 16 37 H 0.20 1.38 8.06 -52.49 -0.42 0.95 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.11 1.38 5.04 -51.93 -0.26 1.11 16 40 H 0.06 0.79 7.64 -51.93 -0.40 0.40 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.62 7.14 -51.93 -0.37 1.25 16 45 H 0.06 1.03 7.58 -51.93 -0.39 0.64 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.39 10.21 6.87 -40.82 -0.28 9.93 16 49 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 50 H 0.09 1.73 7.44 -51.93 -0.39 1.34 16 51 H 0.08 1.42 7.98 -51.93 -0.41 1.01 16 LS Contribution 407.19 15.07 6.14 6.14 Total: -1.00 -34.13 407.19 -8.26 -42.39 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -8.38 Total: 6.11 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -1.86 Total: -0.32 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: 0.77 Total: -61.87 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.13 -8.26 -42.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112552884.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.719 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds