Wall clock time and date at job start Wed Apr 1 2020 05:50:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52997 * 109.47224 * 2 1
4 4 N 1.46500 * 109.46887 * 179.97438 * 3 2 1
5 5 C 1.34818 * 126.59002 * 125.28005 * 4 3 2
6 6 C 1.36596 * 106.84024 * 180.15178 * 5 4 3
7 7 C 1.47523 * 125.77364 * 179.89758 * 6 5 4
8 8 O 1.21594 * 119.99936 * 359.71147 * 7 6 5
9 9 N 1.34771 * 119.99934 * 179.71015 * 7 6 5
10 10 C 1.48116 * 127.84490 * 0.02562 * 9 7 6
11 11 C 1.54334 * 104.69258 * 219.73856 * 10 9 7
12 12 H 1.09002 * 111.85310 * 214.57529 * 11 10 9
13 13 C 1.54164 * 109.66054 * 89.92176 * 11 10 9
14 14 C 1.53956 * 104.75521 * 224.70569 * 13 11 10
15 15 C 1.54841 * 103.15006 * 37.00293 * 14 13 11
16 16 C 1.54163 * 104.32831 * 322.50830 * 15 14 13
17 17 C 1.53001 * 111.82502 * 261.25170 * 16 15 14
18 18 N 1.46497 * 109.46908 * 299.25844 * 17 16 15
19 19 C 1.36942 * 119.99920 * 179.97438 * 18 17 16
20 20 H 1.08001 * 119.99931 * 0.02562 * 19 18 17
21 21 C 1.38807 * 119.99976 * 179.97438 * 19 18 17
22 22 N 1.31617 * 120.00346 * 0.02562 * 21 19 18
23 23 Si 1.86803 * 119.99886 * 180.02562 * 21 19 18
24 24 H 1.48501 * 109.47038 * 0.02562 * 23 21 19
25 25 H 1.48498 * 109.46909 * 120.00173 * 23 21 19
26 26 H 1.48496 * 109.47210 * 239.99875 * 23 21 19
27 27 C 1.48120 * 127.84224 * 179.97438 * 9 7 6
28 28 N 1.34405 * 108.45375 * 359.62962 * 6 5 4
29 29 N 1.28757 * 109.52578 * 0.22601 * 28 6 5
30 30 H 1.09001 * 109.47643 * 299.99676 * 1 2 3
31 31 H 1.09009 * 109.47076 * 59.99741 * 1 2 3
32 32 H 1.09007 * 109.47420 * 179.97438 * 1 2 3
33 33 H 1.09002 * 109.47049 * 239.99858 * 2 1 3
34 34 H 1.08997 * 109.46789 * 120.00582 * 2 1 3
35 35 H 1.09007 * 109.46623 * 60.00360 * 3 2 1
36 36 H 1.08994 * 109.47497 * 300.00474 * 3 2 1
37 37 H 1.08001 * 126.58129 * 0.02562 * 5 4 3
38 38 H 1.09002 * 110.39535 * 100.93932 * 10 9 7
39 39 H 1.08999 * 110.39511 * 338.54208 * 10 9 7
40 40 H 1.09003 * 110.45976 * 342.13643 * 13 11 10
41 41 H 1.09003 * 110.45777 * 104.70713 * 13 11 10
42 42 H 1.08998 * 109.96129 * 278.83825 * 14 13 11
43 43 H 1.08995 * 111.16178 * 155.73528 * 14 13 11
44 44 H 1.09002 * 110.46568 * 203.79892 * 15 14 13
45 45 H 1.08996 * 110.46393 * 81.22255 * 15 14 13
46 46 H 1.09005 * 109.46847 * 59.25544 * 17 16 15
47 47 H 1.08995 * 109.47361 * 179.25743 * 17 16 15
48 48 H 0.97001 * 120.00083 * 359.97438 * 18 17 16
49 49 H 0.97001 * 120.00317 * 179.97438 * 22 21 19
50 50 H 1.09003 * 110.39272 * 21.46003 * 27 9 7
51 51 H 1.09000 * 110.49382 * 259.11056 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4424 0.0006
5 6 4.3090 2.0674 -0.8828
6 6 5.5944 1.7980 -0.5074
7 6 6.8109 2.2773 -1.1907
8 8 6.7164 2.9731 -2.1834
9 7 8.0268 1.9441 -0.7145
10 6 8.3424 1.1131 0.4703
11 6 9.5469 1.8158 1.1316
12 1 10.2353 1.1015 1.5833
13 6 9.0443 2.8533 2.1552
14 6 9.9012 4.1059 1.8968
15 6 10.0668 4.1080 0.3573
16 6 10.2149 2.6187 -0.0126
17 6 11.6802 2.2240 -0.2076
18 7 12.2574 3.0131 -1.2986
19 6 13.5668 2.8319 -1.6562
20 1 14.1738 2.1070 -1.1342
21 6 14.1136 3.5792 -2.6903
22 7 13.3738 4.4623 -3.3267
23 14 15.8996 3.3316 -3.1786
24 1 16.5086 2.2880 -2.3153
25 1 15.9695 2.9017 -4.5983
26 1 16.6402 4.6077 -3.0108
27 6 9.3511 2.3248 -1.2579
28 7 5.5636 1.0271 0.5932
29 7 4.3405 0.7965 0.9228
30 1 -0.3634 0.5138 0.8900
31 1 -0.3634 0.5139 -0.8900
32 1 -0.3634 -1.0277 -0.0005
33 1 1.8933 -0.5139 -0.8900
34 1 1.8932 -0.5139 0.8899
35 1 1.6766 1.9562 0.8901
36 1 1.6766 1.9564 -0.8899
37 1 3.9967 2.6647 -1.7267
38 1 8.6132 0.1026 0.1643
39 1 7.4941 1.0893 1.1543
40 1 7.9966 3.0923 1.9723
41 1 9.1797 2.4826 3.1713
42 1 10.8682 4.0033 2.3892
43 1 9.3899 5.0084 2.2316
44 1 10.9606 4.6624 0.0709
45 1 9.1842 4.5333 -0.1204
46 1 12.2335 2.4158 0.7118
47 1 11.7412 1.1641 -0.4540
48 1 11.7121 3.6639 -1.7676
49 1 13.7560 4.9848 -4.0491
50 1 9.2647 3.2163 -1.8792
51 1 9.7788 1.5028 -1.8318
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001112552884.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:50:37
Heat of formation + Delta-G solvation = 50.405443 kcal
Electronic energy + Delta-G solvation = -31125.267918 eV
Core-core repulsion = 27060.899633 eV
Total energy + Delta-G solvation = -4064.368285 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.33 seconds
Orbital eigenvalues (eV)
-43.28265 -41.62458 -39.59009 -36.95190 -36.46487 -35.57982 -33.63386 -33.41870
-32.10477 -31.08441 -30.57395 -28.16139 -27.19685 -26.53560 -25.49828 -24.23781
-23.72809 -23.30818 -22.37785 -21.26601 -20.66856 -19.93081 -19.23491 -18.33178
-17.44543 -17.35371 -16.81316 -16.70514 -16.50696 -16.09777 -15.86250 -15.72809
-15.61788 -15.09190 -14.99413 -14.72034 -14.59991 -14.37354 -14.18292 -13.82658
-13.60871 -13.35281 -13.19359 -13.06910 -12.95301 -12.86147 -12.67714 -12.39730
-12.20729 -12.10880 -11.92929 -11.87507 -11.84378 -11.73558 -11.67205 -11.55694
-11.43928 -11.31345 -11.27017 -11.19253 -10.90832 -10.40567 -9.71171 -8.94520
-7.90970 -5.19301 0.12054 0.57959 1.07205 1.48476 1.49336 1.59404
1.85267 2.16996 2.58203 3.05486 3.29450 3.40877 3.42764 3.55146
3.62708 3.75745 3.83303 3.93143 4.14648 4.15171 4.22284 4.25400
4.31431 4.33641 4.39655 4.41644 4.47276 4.50113 4.61790 4.66122
4.69790 4.72508 4.79447 4.85678 4.95947 4.99149 5.06355 5.12172
5.13557 5.16557 5.19387 5.26550 5.31772 5.32919 5.42083 5.45520
5.49103 5.53577 5.54818 6.30611 6.46958 6.78814 7.04901 7.37194
8.13773 8.36701 9.32848
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.021428 B = 0.002233 C = 0.002128
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1306.391784 B =12533.646281 C =13155.241298
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.134 4.134
3 C 0.110 3.890
4 N -0.346 5.346
5 C 0.110 3.890
6 C -0.118 4.118
7 C 0.615 3.385
8 O -0.579 6.579
9 N -0.603 5.603
10 C 0.102 3.898
11 C -0.091 4.091
12 H 0.114 0.886
13 C -0.102 4.102
14 C -0.115 4.115
15 C -0.109 4.109
16 C -0.067 4.067
17 C 0.175 3.825
18 N -0.742 5.742
19 C -0.238 4.238
20 H 0.079 0.921
21 C -0.078 4.078
22 N -0.971 5.971
23 Si 0.972 3.028
24 H -0.264 1.264
25 H -0.297 1.297
26 H -0.295 1.295
27 C 0.127 3.873
28 N -0.216 5.216
29 N -0.081 5.081
30 H 0.068 0.932
31 H 0.070 0.930
32 H 0.062 0.938
33 H 0.062 0.938
34 H 0.065 0.935
35 H 0.116 0.884
36 H 0.138 0.862
37 H 0.233 0.767
38 H 0.077 0.923
39 H 0.116 0.884
40 H 0.055 0.945
41 H 0.092 0.908
42 H 0.069 0.931
43 H 0.071 0.929
44 H 0.050 0.950
45 H 0.046 0.954
46 H 0.032 0.968
47 H 0.026 0.974
48 H 0.373 0.627
49 H 0.249 0.751
50 H 0.054 0.946
51 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.469 -8.235 12.515 32.170
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.172 4.172
3 C -0.008 4.008
4 N -0.131 5.131
5 C -0.048 4.048
6 C -0.258 4.258
7 C 0.403 3.597
8 O -0.459 6.459
9 N -0.333 5.333
10 C -0.020 4.020
11 C -0.110 4.110
12 H 0.132 0.868
13 C -0.140 4.140
14 C -0.152 4.152
15 C -0.147 4.147
16 C -0.068 4.068
17 C 0.049 3.951
18 N -0.384 5.384
19 C -0.370 4.370
20 H 0.097 0.903
21 C -0.270 4.270
22 N -0.622 5.622
23 Si 0.802 3.198
24 H -0.188 1.188
25 H -0.224 1.224
26 H -0.222 1.222
27 C 0.005 3.995
28 N -0.090 5.090
29 N -0.061 5.061
30 H 0.087 0.913
31 H 0.089 0.911
32 H 0.081 0.919
33 H 0.080 0.920
34 H 0.084 0.916
35 H 0.134 0.866
36 H 0.156 0.844
37 H 0.249 0.751
38 H 0.095 0.905
39 H 0.134 0.866
40 H 0.074 0.926
41 H 0.111 0.889
42 H 0.088 0.912
43 H 0.089 0.911
44 H 0.068 0.932
45 H 0.065 0.935
46 H 0.050 0.950
47 H 0.044 0.956
48 H 0.205 0.795
49 H 0.058 0.942
50 H 0.073 0.927
51 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -28.483 -8.838 13.255 32.636
hybrid contribution 1.022 1.025 -2.001 2.469
sum -27.461 -7.813 11.254 30.689
Atomic orbital electron populations
1.21681 0.92309 1.03073 1.03297 1.21778 0.98150 0.94290 1.03013
1.22669 0.69840 1.00616 1.07690 1.50825 1.10070 1.33389 1.18790
1.23768 0.89038 0.95945 0.96094 1.21172 0.94292 1.10030 1.00266
1.16709 0.81250 0.79125 0.82611 1.90799 1.86576 1.40922 1.27591
1.48707 1.04270 1.50488 1.29867 1.22903 0.98965 0.93464 0.86644
1.22788 0.96127 0.97630 0.94464 0.86837 1.22160 0.98689 0.93963
0.99169 1.22275 1.00469 0.98534 0.93958 1.22325 1.00129 0.94829
0.97435 1.22138 0.94036 0.96237 0.94426 1.20682 0.90009 0.93855
0.90563 1.42584 1.09991 1.46476 1.39387 1.19686 0.88753 1.16395
1.12159 0.90348 1.25556 1.02197 0.99577 0.99703 1.69842 1.37060
1.28783 1.26515 0.85081 0.80218 0.77144 0.77371 1.18809 1.22403
1.22248 1.22202 0.81448 0.99822 0.96072 1.74553 1.13334 1.10667
1.10410 1.81876 0.93466 1.17953 1.12836 0.91320 0.91054 0.91901
0.91964 0.91629 0.86628 0.84399 0.75062 0.90499 0.86599 0.92614
0.88950 0.91211 0.91056 0.93159 0.93470 0.95037 0.95577 0.79455
0.94207 0.92740 0.91841
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.37 9.91 71.98 0.71 0.34 16
2 C -0.13 -0.84 6.14 30.59 0.19 -0.65 16
3 C 0.11 0.57 6.54 86.38 0.56 1.14 16
4 N -0.35 -5.06 3.69 -347.10 -1.28 -6.35 16
5 C 0.11 1.91 11.27 83.85 0.95 2.86 16
6 C -0.12 -3.02 6.87 40.82 0.28 -2.74 16
7 C 0.61 20.16 7.91 86.69 0.69 20.85 16
8 O -0.58 -22.62 17.13 -4.01 -0.07 -22.69 16
9 N -0.60 -19.26 3.31 -811.98 -2.69 -21.95 16
10 C 0.10 2.63 6.00 86.52 0.52 3.15 16
11 C -0.09 -2.30 3.53 -9.29 -0.03 -2.33 16
12 H 0.11 2.49 7.88 -2.39 -0.02 2.47 16
13 C -0.10 -2.34 6.24 31.31 0.20 -2.15 16
14 C -0.11 -3.06 6.86 31.55 0.22 -2.84 16
15 C -0.11 -3.79 5.59 31.62 0.18 -3.61 16
16 C -0.07 -2.25 0.62 -50.66 -0.03 -2.28 16
17 C 0.18 6.99 5.19 86.38 0.45 7.44 16
18 N -0.74 -38.15 4.93 -343.45 -1.69 -39.84 16
19 C -0.24 -13.43 9.99 84.03 0.84 -12.60 16
20 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16
21 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16
22 N -0.97 -61.26 13.06 21.65 0.28 -60.98 16
23 Si 0.97 47.21 29.55 68.60 2.03 49.24 16
24 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16
25 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16
26 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16
27 C 0.13 4.71 5.49 86.54 0.47 5.18 16
28 N -0.22 -5.39 9.35 -49.99 -0.47 -5.86 16
29 N -0.08 -1.74 13.65 37.02 0.51 -1.24 16
30 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16
31 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16
32 H 0.06 0.22 8.14 -2.38 -0.02 0.20 16
33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16
34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16
35 H 0.12 0.30 8.14 -2.38 -0.02 0.29 16
36 H 0.14 -0.12 8.08 -2.39 -0.02 -0.14 16
37 H 0.23 2.54 8.06 -2.91 -0.02 2.51 16
38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16
39 H 0.12 2.83 5.04 -2.39 -0.01 2.82 16
40 H 0.06 1.35 7.64 -2.39 -0.02 1.33 16
41 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16
42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16
43 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16
44 H 0.05 2.06 7.14 -2.39 -0.02 2.04 16
45 H 0.05 1.72 7.58 -2.39 -0.02 1.70 16
46 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16
47 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16
48 H 0.37 20.85 6.87 -92.71 -0.64 20.21 16
49 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16
50 H 0.05 2.35 7.44 -2.39 -0.02 2.33 16
51 H 0.06 2.47 7.98 -2.39 -0.02 2.45 16
Total: -1.00 -76.88 407.19 3.56 -73.32
By element:
Atomic # 1 Polarization: 28.44 SS G_CDS: 0.29 Total: 28.73 kcal
Atomic # 6 Polarization: 0.97 SS G_CDS: 6.65 Total: 7.62 kcal
Atomic # 7 Polarization: -130.88 SS G_CDS: -5.34 Total: -136.22 kcal
Atomic # 8 Polarization: -22.62 SS G_CDS: -0.07 Total: -22.69 kcal
Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal
Total: -76.88 3.56 -73.32 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001112552884.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.725 kcal
(2) G-P(sol) polarization free energy of solvation -76.879 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.846 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.320 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.405 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.33 seconds