Wall clock time and date at job start Wed Apr 1 2020 05:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47224 * 2 1 4 4 N 1.46500 * 109.46887 * 179.97438 * 3 2 1 5 5 C 1.34818 * 126.59002 * 125.28005 * 4 3 2 6 6 C 1.36596 * 106.84024 * 180.15178 * 5 4 3 7 7 C 1.47523 * 125.77364 * 179.89758 * 6 5 4 8 8 O 1.21594 * 119.99936 * 359.71147 * 7 6 5 9 9 N 1.34771 * 119.99934 * 179.71015 * 7 6 5 10 10 C 1.48116 * 127.84490 * 0.02562 * 9 7 6 11 11 C 1.54334 * 104.69258 * 219.73856 * 10 9 7 12 12 H 1.09002 * 111.85310 * 214.57529 * 11 10 9 13 13 C 1.54164 * 109.66054 * 89.92176 * 11 10 9 14 14 C 1.53956 * 104.75521 * 224.70569 * 13 11 10 15 15 C 1.54841 * 103.15006 * 37.00293 * 14 13 11 16 16 C 1.54163 * 104.32831 * 322.50830 * 15 14 13 17 17 C 1.53001 * 111.82502 * 261.25170 * 16 15 14 18 18 N 1.46497 * 109.46908 * 299.25844 * 17 16 15 19 19 C 1.36942 * 119.99920 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99931 * 0.02562 * 19 18 17 21 21 C 1.38807 * 119.99976 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00346 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99886 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47038 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46909 * 120.00173 * 23 21 19 26 26 H 1.48496 * 109.47210 * 239.99875 * 23 21 19 27 27 C 1.48120 * 127.84224 * 179.97438 * 9 7 6 28 28 N 1.34405 * 108.45375 * 359.62962 * 6 5 4 29 29 N 1.28757 * 109.52578 * 0.22601 * 28 6 5 30 30 H 1.09001 * 109.47643 * 299.99676 * 1 2 3 31 31 H 1.09009 * 109.47076 * 59.99741 * 1 2 3 32 32 H 1.09007 * 109.47420 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47049 * 239.99858 * 2 1 3 34 34 H 1.08997 * 109.46789 * 120.00582 * 2 1 3 35 35 H 1.09007 * 109.46623 * 60.00360 * 3 2 1 36 36 H 1.08994 * 109.47497 * 300.00474 * 3 2 1 37 37 H 1.08001 * 126.58129 * 0.02562 * 5 4 3 38 38 H 1.09002 * 110.39535 * 100.93932 * 10 9 7 39 39 H 1.08999 * 110.39511 * 338.54208 * 10 9 7 40 40 H 1.09003 * 110.45976 * 342.13643 * 13 11 10 41 41 H 1.09003 * 110.45777 * 104.70713 * 13 11 10 42 42 H 1.08998 * 109.96129 * 278.83825 * 14 13 11 43 43 H 1.08995 * 111.16178 * 155.73528 * 14 13 11 44 44 H 1.09002 * 110.46568 * 203.79892 * 15 14 13 45 45 H 1.08996 * 110.46393 * 81.22255 * 15 14 13 46 46 H 1.09005 * 109.46847 * 59.25544 * 17 16 15 47 47 H 1.08995 * 109.47361 * 179.25743 * 17 16 15 48 48 H 0.97001 * 120.00083 * 359.97438 * 18 17 16 49 49 H 0.97001 * 120.00317 * 179.97438 * 22 21 19 50 50 H 1.09003 * 110.39272 * 21.46003 * 27 9 7 51 51 H 1.09000 * 110.49382 * 259.11056 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3090 2.0674 -0.8828 6 6 5.5944 1.7980 -0.5074 7 6 6.8109 2.2773 -1.1907 8 8 6.7164 2.9731 -2.1834 9 7 8.0268 1.9441 -0.7145 10 6 8.3424 1.1131 0.4703 11 6 9.5469 1.8158 1.1316 12 1 10.2353 1.1015 1.5833 13 6 9.0443 2.8533 2.1552 14 6 9.9012 4.1059 1.8968 15 6 10.0668 4.1080 0.3573 16 6 10.2149 2.6187 -0.0126 17 6 11.6802 2.2240 -0.2076 18 7 12.2574 3.0131 -1.2986 19 6 13.5668 2.8319 -1.6562 20 1 14.1738 2.1070 -1.1342 21 6 14.1136 3.5792 -2.6903 22 7 13.3738 4.4623 -3.3267 23 14 15.8996 3.3316 -3.1786 24 1 16.5086 2.2880 -2.3153 25 1 15.9695 2.9017 -4.5983 26 1 16.6402 4.6077 -3.0108 27 6 9.3511 2.3248 -1.2579 28 7 5.5636 1.0271 0.5932 29 7 4.3405 0.7965 0.9228 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.6766 1.9562 0.8901 36 1 1.6766 1.9564 -0.8899 37 1 3.9967 2.6647 -1.7267 38 1 8.6132 0.1026 0.1643 39 1 7.4941 1.0893 1.1543 40 1 7.9966 3.0923 1.9723 41 1 9.1797 2.4826 3.1713 42 1 10.8682 4.0033 2.3892 43 1 9.3899 5.0084 2.2316 44 1 10.9606 4.6624 0.0709 45 1 9.1842 4.5333 -0.1204 46 1 12.2335 2.4158 0.7118 47 1 11.7412 1.1641 -0.4540 48 1 11.7121 3.6639 -1.7676 49 1 13.7560 4.9848 -4.0491 50 1 9.2647 3.2163 -1.8792 51 1 9.7788 1.5028 -1.8318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112552884.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:37 Heat of formation + Delta-G solvation = 50.405443 kcal Electronic energy + Delta-G solvation = -31125.267918 eV Core-core repulsion = 27060.899633 eV Total energy + Delta-G solvation = -4064.368285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.28265 -41.62458 -39.59009 -36.95190 -36.46487 -35.57982 -33.63386 -33.41870 -32.10477 -31.08441 -30.57395 -28.16139 -27.19685 -26.53560 -25.49828 -24.23781 -23.72809 -23.30818 -22.37785 -21.26601 -20.66856 -19.93081 -19.23491 -18.33178 -17.44543 -17.35371 -16.81316 -16.70514 -16.50696 -16.09777 -15.86250 -15.72809 -15.61788 -15.09190 -14.99413 -14.72034 -14.59991 -14.37354 -14.18292 -13.82658 -13.60871 -13.35281 -13.19359 -13.06910 -12.95301 -12.86147 -12.67714 -12.39730 -12.20729 -12.10880 -11.92929 -11.87507 -11.84378 -11.73558 -11.67205 -11.55694 -11.43928 -11.31345 -11.27017 -11.19253 -10.90832 -10.40567 -9.71171 -8.94520 -7.90970 -5.19301 0.12054 0.57959 1.07205 1.48476 1.49336 1.59404 1.85267 2.16996 2.58203 3.05486 3.29450 3.40877 3.42764 3.55146 3.62708 3.75745 3.83303 3.93143 4.14648 4.15171 4.22284 4.25400 4.31431 4.33641 4.39655 4.41644 4.47276 4.50113 4.61790 4.66122 4.69790 4.72508 4.79447 4.85678 4.95947 4.99149 5.06355 5.12172 5.13557 5.16557 5.19387 5.26550 5.31772 5.32919 5.42083 5.45520 5.49103 5.53577 5.54818 6.30611 6.46958 6.78814 7.04901 7.37194 8.13773 8.36701 9.32848 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021428 B = 0.002233 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.391784 B =12533.646281 C =13155.241298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.110 3.890 4 N -0.346 5.346 5 C 0.110 3.890 6 C -0.118 4.118 7 C 0.615 3.385 8 O -0.579 6.579 9 N -0.603 5.603 10 C 0.102 3.898 11 C -0.091 4.091 12 H 0.114 0.886 13 C -0.102 4.102 14 C -0.115 4.115 15 C -0.109 4.109 16 C -0.067 4.067 17 C 0.175 3.825 18 N -0.742 5.742 19 C -0.238 4.238 20 H 0.079 0.921 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.972 3.028 24 H -0.264 1.264 25 H -0.297 1.297 26 H -0.295 1.295 27 C 0.127 3.873 28 N -0.216 5.216 29 N -0.081 5.081 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.138 0.862 37 H 0.233 0.767 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.046 0.954 46 H 0.032 0.968 47 H 0.026 0.974 48 H 0.373 0.627 49 H 0.249 0.751 50 H 0.054 0.946 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.469 -8.235 12.515 32.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.008 4.008 4 N -0.131 5.131 5 C -0.048 4.048 6 C -0.258 4.258 7 C 0.403 3.597 8 O -0.459 6.459 9 N -0.333 5.333 10 C -0.020 4.020 11 C -0.110 4.110 12 H 0.132 0.868 13 C -0.140 4.140 14 C -0.152 4.152 15 C -0.147 4.147 16 C -0.068 4.068 17 C 0.049 3.951 18 N -0.384 5.384 19 C -0.370 4.370 20 H 0.097 0.903 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.802 3.198 24 H -0.188 1.188 25 H -0.224 1.224 26 H -0.222 1.222 27 C 0.005 3.995 28 N -0.090 5.090 29 N -0.061 5.061 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.249 0.751 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.050 0.950 47 H 0.044 0.956 48 H 0.205 0.795 49 H 0.058 0.942 50 H 0.073 0.927 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -28.483 -8.838 13.255 32.636 hybrid contribution 1.022 1.025 -2.001 2.469 sum -27.461 -7.813 11.254 30.689 Atomic orbital electron populations 1.21681 0.92309 1.03073 1.03297 1.21778 0.98150 0.94290 1.03013 1.22669 0.69840 1.00616 1.07690 1.50825 1.10070 1.33389 1.18790 1.23768 0.89038 0.95945 0.96094 1.21172 0.94292 1.10030 1.00266 1.16709 0.81250 0.79125 0.82611 1.90799 1.86576 1.40922 1.27591 1.48707 1.04270 1.50488 1.29867 1.22903 0.98965 0.93464 0.86644 1.22788 0.96127 0.97630 0.94464 0.86837 1.22160 0.98689 0.93963 0.99169 1.22275 1.00469 0.98534 0.93958 1.22325 1.00129 0.94829 0.97435 1.22138 0.94036 0.96237 0.94426 1.20682 0.90009 0.93855 0.90563 1.42584 1.09991 1.46476 1.39387 1.19686 0.88753 1.16395 1.12159 0.90348 1.25556 1.02197 0.99577 0.99703 1.69842 1.37060 1.28783 1.26515 0.85081 0.80218 0.77144 0.77371 1.18809 1.22403 1.22248 1.22202 0.81448 0.99822 0.96072 1.74553 1.13334 1.10667 1.10410 1.81876 0.93466 1.17953 1.12836 0.91320 0.91054 0.91901 0.91964 0.91629 0.86628 0.84399 0.75062 0.90499 0.86599 0.92614 0.88950 0.91211 0.91056 0.93159 0.93470 0.95037 0.95577 0.79455 0.94207 0.92740 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.37 9.91 71.98 0.71 0.34 16 2 C -0.13 -0.84 6.14 30.59 0.19 -0.65 16 3 C 0.11 0.57 6.54 86.38 0.56 1.14 16 4 N -0.35 -5.06 3.69 -347.10 -1.28 -6.35 16 5 C 0.11 1.91 11.27 83.85 0.95 2.86 16 6 C -0.12 -3.02 6.87 40.82 0.28 -2.74 16 7 C 0.61 20.16 7.91 86.69 0.69 20.85 16 8 O -0.58 -22.62 17.13 -4.01 -0.07 -22.69 16 9 N -0.60 -19.26 3.31 -811.98 -2.69 -21.95 16 10 C 0.10 2.63 6.00 86.52 0.52 3.15 16 11 C -0.09 -2.30 3.53 -9.29 -0.03 -2.33 16 12 H 0.11 2.49 7.88 -2.39 -0.02 2.47 16 13 C -0.10 -2.34 6.24 31.31 0.20 -2.15 16 14 C -0.11 -3.06 6.86 31.55 0.22 -2.84 16 15 C -0.11 -3.79 5.59 31.62 0.18 -3.61 16 16 C -0.07 -2.25 0.62 -50.66 -0.03 -2.28 16 17 C 0.18 6.99 5.19 86.38 0.45 7.44 16 18 N -0.74 -38.15 4.93 -343.45 -1.69 -39.84 16 19 C -0.24 -13.43 9.99 84.03 0.84 -12.60 16 20 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 22 N -0.97 -61.26 13.06 21.65 0.28 -60.98 16 23 Si 0.97 47.21 29.55 68.60 2.03 49.24 16 24 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 26 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 27 C 0.13 4.71 5.49 86.54 0.47 5.18 16 28 N -0.22 -5.39 9.35 -49.99 -0.47 -5.86 16 29 N -0.08 -1.74 13.65 37.02 0.51 -1.24 16 30 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 32 H 0.06 0.22 8.14 -2.38 -0.02 0.20 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.12 0.30 8.14 -2.38 -0.02 0.29 16 36 H 0.14 -0.12 8.08 -2.39 -0.02 -0.14 16 37 H 0.23 2.54 8.06 -2.91 -0.02 2.51 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.12 2.83 5.04 -2.39 -0.01 2.82 16 40 H 0.06 1.35 7.64 -2.39 -0.02 1.33 16 41 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.05 2.06 7.14 -2.39 -0.02 2.04 16 45 H 0.05 1.72 7.58 -2.39 -0.02 1.70 16 46 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.37 20.85 6.87 -92.71 -0.64 20.21 16 49 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 50 H 0.05 2.35 7.44 -2.39 -0.02 2.33 16 51 H 0.06 2.47 7.98 -2.39 -0.02 2.45 16 Total: -1.00 -76.88 407.19 3.56 -73.32 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.29 Total: 28.73 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 6.65 Total: 7.62 kcal Atomic # 7 Polarization: -130.88 SS G_CDS: -5.34 Total: -136.22 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.07 Total: -22.69 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -76.88 3.56 -73.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112552884.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.725 kcal (2) G-P(sol) polarization free energy of solvation -76.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds