Wall clock time and date at job start Wed Apr 1 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50690 * 120.00027 * 2 1 4 4 N 1.46503 * 109.47060 * 125.00590 * 3 2 1 5 5 C 1.36729 * 127.13941 * 95.69971 * 4 3 2 6 6 C 1.50703 * 126.35144 * 0.02562 * 5 4 3 7 7 C 1.52998 * 109.46767 * 269.71442 * 6 5 4 8 8 C 1.53004 * 109.47174 * 179.97438 * 7 6 5 9 9 C 1.50691 * 109.47374 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00022 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00106 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99987 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47248 * 89.99594 * 13 11 9 15 15 H 1.48492 * 109.47141 * 209.99849 * 13 11 9 16 16 H 1.48504 * 109.46784 * 330.00152 * 13 11 9 17 17 N 1.30299 * 107.30802 * 179.73792 * 5 4 3 18 18 N 1.28526 * 110.04811 * 0.26048 * 17 5 4 19 19 C 1.31207 * 109.86478 * 0.02562 * 18 17 5 20 20 N 1.38592 * 126.47556 * 179.97438 * 19 18 17 21 21 C 1.47191 * 110.99469 * 94.29069 * 20 19 18 22 22 C 1.53002 * 108.71481 * 167.62198 * 21 20 19 23 23 N 1.46008 * 110.03873 * 50.30183 * 22 21 20 24 24 C 1.33722 * 122.92831 * 341.84604 * 23 22 21 25 25 O 1.21278 * 118.62371 * 181.68304 * 24 23 22 26 26 C 1.46894 * 111.00078 * 331.40409 * 20 19 18 27 27 H 1.08997 * 109.39038 * 53.60843 * 26 20 19 28 28 C 1.53009 * 109.38382 * 293.82078 * 26 20 19 29 29 C 1.53003 * 109.46562 * 299.05282 * 28 26 20 30 30 H 1.07997 * 120.00402 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.99630 * 359.97438 * 1 2 3 32 32 H 1.07997 * 119.99630 * 180.02562 * 2 1 3 33 33 H 1.08995 * 109.47615 * 5.00311 * 3 2 1 34 34 H 1.09004 * 109.47312 * 245.00132 * 3 2 1 35 35 H 1.08998 * 109.47732 * 149.71187 * 6 5 4 36 36 H 1.09006 * 109.46945 * 29.70826 * 6 5 4 37 37 H 1.08996 * 109.47407 * 299.99379 * 7 6 5 38 38 H 1.09000 * 109.47660 * 59.99663 * 7 6 5 39 39 H 1.08996 * 109.46997 * 300.00304 * 8 7 6 40 40 H 1.09000 * 109.46553 * 59.99659 * 8 7 6 41 41 H 0.97003 * 119.99754 * 180.02562 * 12 11 9 42 42 H 1.08993 * 109.59722 * 287.40507 * 21 20 19 43 43 H 1.08999 * 109.59467 * 47.86849 * 21 20 19 44 44 H 1.09004 * 109.37217 * 290.13236 * 22 21 20 45 45 H 1.08998 * 109.28397 * 170.42230 * 22 21 20 46 46 H 0.97000 * 118.53614 * 161.81443 * 23 22 21 47 47 H 1.08994 * 109.47355 * 59.04988 * 28 26 20 48 48 H 1.09002 * 109.46816 * 179.05790 * 28 26 20 49 49 H 1.08994 * 109.47337 * 61.64830 * 29 28 26 50 50 H 1.09005 * 109.46704 * 181.64640 * 29 28 26 51 51 H 1.08997 * 109.47091 * 301.64227 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3317 1.1314 5 6 4.3206 1.0013 1.1171 6 6 5.1125 0.5361 -0.0777 7 6 5.0490 -0.9899 -0.1687 8 6 5.8525 -1.4623 -1.3821 9 6 5.7904 -2.9652 -1.4715 10 1 5.2333 -3.5274 -0.7367 11 6 6.4449 -3.6228 -2.4915 12 7 6.3912 -4.9346 -2.5692 13 14 7.4092 -2.6506 -3.7621 14 1 8.8116 -2.4882 -3.3014 15 1 7.3946 -3.3774 -5.0569 16 1 6.7880 -1.3133 -3.9379 17 7 4.7749 1.1692 2.3268 18 7 3.8313 1.5748 3.0995 19 6 2.7153 1.6879 2.4189 20 7 1.4869 2.0977 2.9128 21 6 1.2919 3.5423 2.7089 22 6 -0.1749 3.8827 2.9801 23 7 -0.5883 3.3263 4.2652 24 6 0.0860 2.3530 4.8866 25 8 -0.3447 1.9272 5.9373 26 6 1.3548 1.7647 4.3374 27 1 2.2061 2.1700 4.8842 28 6 1.3226 0.2439 4.5026 29 6 0.1176 -0.3252 3.7509 30 1 -0.5400 -0.9352 0.0004 31 1 -0.5399 0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3587 2.1316 0.0896 34 1 2.6213 1.4026 -0.9314 35 1 6.1506 0.8508 0.0294 36 1 4.6924 0.9720 -0.9841 37 1 5.4691 -1.4258 0.7376 38 1 4.0109 -1.3046 -0.2759 39 1 5.4320 -1.0263 -2.2883 40 1 6.8905 -1.1475 -1.2753 41 1 6.8520 -5.3972 -3.2865 42 1 1.9295 4.0979 3.3965 43 1 1.5436 3.8037 1.6811 44 1 -0.7957 3.4637 2.1882 45 1 -0.2955 4.9658 2.9994 46 1 -1.3875 3.6786 4.6871 47 1 2.2391 -0.1851 4.0977 48 1 1.2413 -0.0049 5.5608 49 1 0.2134 -0.1016 2.6885 50 1 0.0779 -1.4053 3.8928 51 1 -0.7970 0.1256 4.1362 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121591833.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:50 Heat of formation + Delta-G solvation = 69.500951 kcal Electronic energy + Delta-G solvation = -32033.908661 eV Core-core repulsion = 27970.368420 eV Total energy + Delta-G solvation = -4063.540241 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.11436 -40.94915 -37.83398 -36.40310 -35.79100 -34.93547 -33.25548 -32.80739 -32.21841 -30.35935 -29.40328 -27.76312 -26.98840 -26.36936 -24.36483 -23.65383 -22.37266 -21.41605 -21.14299 -20.45640 -19.79202 -19.04339 -18.03799 -17.65597 -17.18479 -16.71022 -16.24821 -16.04925 -15.79679 -15.45084 -15.09620 -14.64183 -14.34911 -14.26237 -14.17961 -13.90726 -13.62693 -13.54699 -13.06534 -12.82327 -12.75041 -12.68770 -12.29509 -12.21512 -11.90240 -11.77508 -11.73122 -11.54783 -11.34594 -11.13565 -11.01678 -10.89278 -10.68040 -10.26308 -10.22244 -10.03607 -9.88160 -9.81429 -9.69861 -9.59343 -9.49309 -9.24445 -8.57012 -8.56184 -6.06989 -4.05645 1.57966 1.76640 2.17961 2.35856 2.75053 2.86460 3.28212 3.28475 3.35733 3.37019 3.97950 4.05176 4.37616 4.39424 4.41796 4.48135 4.55279 4.58213 4.68235 4.84068 4.86038 4.94273 5.01709 5.12403 5.18361 5.21051 5.26891 5.29180 5.53458 5.56600 5.64097 5.65581 5.74376 5.85232 5.89052 5.93642 5.98785 6.12114 6.23021 6.31816 6.36662 6.38731 6.44907 6.45584 6.52075 6.78101 6.78819 7.01152 7.21964 7.34341 7.74789 7.77942 8.50342 8.75801 8.97958 9.54807 11.06503 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.002602 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.354696 B =10756.961795 C =10878.032309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.175 4.175 3 C 0.142 3.858 4 N -0.463 5.463 5 C 0.208 3.792 6 C -0.039 4.039 7 C -0.095 4.095 8 C -0.012 4.012 9 C -0.521 4.521 10 H 0.071 0.929 11 C 0.066 3.934 12 N -0.903 5.903 13 Si 0.880 3.120 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.265 1.265 17 N -0.286 5.286 18 N -0.312 5.312 19 C 0.336 3.664 20 N -0.443 5.443 21 C 0.036 3.964 22 C 0.119 3.881 23 N -0.721 5.721 24 C 0.536 3.464 25 O -0.538 6.538 26 C 0.085 3.915 27 H 0.100 0.900 28 C -0.103 4.103 29 C -0.146 4.146 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.016 0.984 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.402 0.598 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.065 0.935 50 H 0.053 0.947 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.768 21.498 7.014 28.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.194 4.194 3 C 0.020 3.980 4 N -0.156 5.156 5 C -0.059 4.059 6 C -0.079 4.079 7 C -0.133 4.133 8 C -0.049 4.049 9 C -0.559 4.559 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.542 5.542 13 Si 0.707 3.293 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.190 1.190 17 N -0.125 5.125 18 N -0.156 5.156 19 C -0.020 4.020 20 N -0.169 5.169 21 C -0.092 4.092 22 C -0.006 4.006 23 N -0.375 5.375 24 C 0.321 3.679 25 O -0.414 6.414 26 C -0.025 4.025 27 H 0.117 0.883 28 C -0.141 4.141 29 C -0.204 4.204 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.140 0.860 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.239 0.761 47 H 0.095 0.905 48 H 0.101 0.899 49 H 0.084 0.916 50 H 0.073 0.927 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.157 20.844 8.267 27.638 hybrid contribution -0.158 0.860 -1.437 1.682 sum -16.315 21.704 6.831 27.999 Atomic orbital electron populations 1.23842 0.95404 1.02211 0.97897 1.23085 0.96364 0.98048 1.01855 1.20939 0.91645 0.97649 0.87782 1.46284 1.10174 1.50176 1.08989 1.25265 0.81399 1.00966 0.98304 1.20400 0.98781 0.99057 0.89630 1.21486 1.01042 0.89616 1.01197 1.19565 0.95020 0.97447 0.92862 1.21098 1.32555 0.89784 1.12460 0.91089 1.25037 0.96064 0.94740 0.97647 1.69917 1.43800 1.07357 1.33102 0.86778 0.80848 0.80543 0.81084 1.20216 1.21459 1.19011 1.74081 1.22376 1.17213 0.98859 1.74543 0.95630 1.19474 1.25928 1.22035 0.91749 1.04882 0.83381 1.59133 1.24171 1.15597 1.18002 1.22661 0.96690 0.86195 1.03606 1.21482 0.94447 0.98940 0.85713 1.45558 1.30248 1.38960 1.22721 1.19899 0.85057 0.78648 0.84254 1.90782 1.67464 1.60031 1.23143 1.21817 0.95957 0.99338 0.85404 0.88257 1.21417 1.00323 0.90139 1.02207 1.21727 0.97021 1.00436 1.01179 0.87725 0.88470 0.85993 0.88756 0.87614 0.88397 0.90388 0.91829 0.92829 0.96591 0.96681 0.92712 0.91942 0.88486 0.90418 0.89401 0.76133 0.90534 0.89872 0.91585 0.92746 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 13.44 29.01 0.39 -0.87 16 2 C -0.17 -1.73 9.85 -36.03 -0.35 -2.09 16 3 C 0.14 1.26 6.51 -5.20 -0.03 1.22 16 4 N -0.46 -5.56 2.79 -115.37 -0.32 -5.88 16 5 C 0.21 3.07 7.32 -154.02 -1.13 1.94 16 6 C -0.04 -0.56 5.58 -27.88 -0.16 -0.72 16 7 C -0.09 -1.74 5.14 -26.73 -0.14 -1.88 16 8 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 9 C -0.52 -14.44 9.66 -34.44 -0.33 -14.78 16 10 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 11 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 12 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 13 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 17 N -0.29 -4.90 12.18 32.99 0.40 -4.49 16 18 N -0.31 -4.89 10.87 30.32 0.33 -4.56 16 19 C 0.34 4.19 5.78 -318.86 -1.84 2.34 16 20 N -0.44 -4.21 3.81 -168.28 -0.64 -4.85 16 21 C 0.04 0.23 5.53 -3.66 -0.02 0.21 16 22 C 0.12 0.48 7.39 -4.31 -0.03 0.45 16 23 N -0.72 -4.82 5.52 -61.06 -0.34 -5.16 16 24 C 0.54 5.61 6.14 -11.67 -0.07 5.54 16 25 O -0.54 -7.50 16.87 5.56 0.09 -7.41 16 26 C 0.09 0.94 1.96 -69.08 -0.14 0.80 16 27 H 0.10 1.20 7.63 -51.93 -0.40 0.80 16 28 C -0.10 -1.25 5.27 -26.73 -0.14 -1.39 16 29 C -0.15 -1.66 9.52 37.16 0.35 -1.30 16 30 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 32 H 0.12 1.52 7.34 -52.49 -0.39 1.13 16 33 H 0.09 0.59 7.48 -51.93 -0.39 0.21 16 34 H 0.11 0.85 7.09 -51.93 -0.37 0.48 16 35 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.08 0.95 7.17 -51.93 -0.37 0.58 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.05 0.97 7.42 -51.93 -0.39 0.59 16 39 H 0.02 0.34 7.20 -51.93 -0.37 -0.03 16 40 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 43 H 0.10 0.49 7.71 -51.93 -0.40 0.09 16 44 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 46 H 0.40 2.15 8.84 -40.82 -0.36 1.78 16 47 H 0.08 1.09 7.03 -51.93 -0.37 0.72 16 48 H 0.08 1.04 7.84 -51.93 -0.41 0.63 16 49 H 0.07 0.74 6.78 -51.93 -0.35 0.39 16 50 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.05 0.58 6.98 -51.93 -0.36 0.21 16 LS Contribution 407.88 15.07 6.15 6.15 Total: -1.00 -34.95 407.88 -10.34 -45.29 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.26 Total: 0.38 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -3.85 Total: -9.10 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.21 Total: -51.72 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.09 Total: -7.41 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.95 -10.34 -45.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121591833.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.795 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds