Wall clock time and date at job start Wed Apr 1 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50690 * 120.00027 * 2 1 4 4 N 1.46503 * 109.47060 * 125.00590 * 3 2 1 5 5 C 1.36729 * 127.13941 * 95.69971 * 4 3 2 6 6 C 1.50703 * 126.35144 * 0.02562 * 5 4 3 7 7 C 1.52998 * 109.46767 * 269.71442 * 6 5 4 8 8 C 1.53004 * 109.47174 * 179.97438 * 7 6 5 9 9 C 1.50691 * 109.47374 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00022 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00106 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99987 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47248 * 89.99594 * 13 11 9 15 15 H 1.48492 * 109.47141 * 209.99849 * 13 11 9 16 16 H 1.48504 * 109.46784 * 330.00152 * 13 11 9 17 17 N 1.30299 * 107.30802 * 179.73792 * 5 4 3 18 18 N 1.28526 * 110.04811 * 0.26048 * 17 5 4 19 19 C 1.31207 * 109.86478 * 0.02562 * 18 17 5 20 20 N 1.38592 * 126.47556 * 179.97438 * 19 18 17 21 21 C 1.47191 * 110.99469 * 94.29069 * 20 19 18 22 22 C 1.53002 * 108.71481 * 167.62198 * 21 20 19 23 23 N 1.46008 * 110.03873 * 50.30183 * 22 21 20 24 24 C 1.33722 * 122.92831 * 341.84604 * 23 22 21 25 25 O 1.21278 * 118.62371 * 181.68304 * 24 23 22 26 26 C 1.46894 * 111.00078 * 331.40409 * 20 19 18 27 27 H 1.08997 * 109.39038 * 53.60843 * 26 20 19 28 28 C 1.53009 * 109.38382 * 293.82078 * 26 20 19 29 29 C 1.53003 * 109.46562 * 299.05282 * 28 26 20 30 30 H 1.07997 * 120.00402 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.99630 * 359.97438 * 1 2 3 32 32 H 1.07997 * 119.99630 * 180.02562 * 2 1 3 33 33 H 1.08995 * 109.47615 * 5.00311 * 3 2 1 34 34 H 1.09004 * 109.47312 * 245.00132 * 3 2 1 35 35 H 1.08998 * 109.47732 * 149.71187 * 6 5 4 36 36 H 1.09006 * 109.46945 * 29.70826 * 6 5 4 37 37 H 1.08996 * 109.47407 * 299.99379 * 7 6 5 38 38 H 1.09000 * 109.47660 * 59.99663 * 7 6 5 39 39 H 1.08996 * 109.46997 * 300.00304 * 8 7 6 40 40 H 1.09000 * 109.46553 * 59.99659 * 8 7 6 41 41 H 0.97003 * 119.99754 * 180.02562 * 12 11 9 42 42 H 1.08993 * 109.59722 * 287.40507 * 21 20 19 43 43 H 1.08999 * 109.59467 * 47.86849 * 21 20 19 44 44 H 1.09004 * 109.37217 * 290.13236 * 22 21 20 45 45 H 1.08998 * 109.28397 * 170.42230 * 22 21 20 46 46 H 0.97000 * 118.53614 * 161.81443 * 23 22 21 47 47 H 1.08994 * 109.47355 * 59.04988 * 28 26 20 48 48 H 1.09002 * 109.46816 * 179.05790 * 28 26 20 49 49 H 1.08994 * 109.47337 * 61.64830 * 29 28 26 50 50 H 1.09005 * 109.46704 * 181.64640 * 29 28 26 51 51 H 1.08997 * 109.47091 * 301.64227 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3317 1.1314 5 6 4.3206 1.0013 1.1171 6 6 5.1125 0.5361 -0.0777 7 6 5.0490 -0.9899 -0.1687 8 6 5.8525 -1.4623 -1.3821 9 6 5.7904 -2.9652 -1.4715 10 1 5.2333 -3.5274 -0.7367 11 6 6.4449 -3.6228 -2.4915 12 7 6.3912 -4.9346 -2.5692 13 14 7.4092 -2.6506 -3.7621 14 1 8.8116 -2.4882 -3.3014 15 1 7.3946 -3.3774 -5.0569 16 1 6.7880 -1.3133 -3.9379 17 7 4.7749 1.1692 2.3268 18 7 3.8313 1.5748 3.0995 19 6 2.7153 1.6879 2.4189 20 7 1.4869 2.0977 2.9128 21 6 1.2919 3.5423 2.7089 22 6 -0.1749 3.8827 2.9801 23 7 -0.5883 3.3263 4.2652 24 6 0.0860 2.3530 4.8866 25 8 -0.3447 1.9272 5.9373 26 6 1.3548 1.7647 4.3374 27 1 2.2061 2.1700 4.8842 28 6 1.3226 0.2439 4.5026 29 6 0.1176 -0.3252 3.7509 30 1 -0.5400 -0.9352 0.0004 31 1 -0.5399 0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3587 2.1316 0.0896 34 1 2.6213 1.4026 -0.9314 35 1 6.1506 0.8508 0.0294 36 1 4.6924 0.9720 -0.9841 37 1 5.4691 -1.4258 0.7376 38 1 4.0109 -1.3046 -0.2759 39 1 5.4320 -1.0263 -2.2883 40 1 6.8905 -1.1475 -1.2753 41 1 6.8520 -5.3972 -3.2865 42 1 1.9295 4.0979 3.3965 43 1 1.5436 3.8037 1.6811 44 1 -0.7957 3.4637 2.1882 45 1 -0.2955 4.9658 2.9994 46 1 -1.3875 3.6786 4.6871 47 1 2.2391 -0.1851 4.0977 48 1 1.2413 -0.0049 5.5608 49 1 0.2134 -0.1016 2.6885 50 1 0.0779 -1.4053 3.8928 51 1 -0.7970 0.1256 4.1362 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121591833.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:49 Heat of formation + Delta-G solvation = 46.772637 kcal Electronic energy + Delta-G solvation = -32034.894235 eV Core-core repulsion = 27970.368420 eV Total energy + Delta-G solvation = -4064.525815 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.13958 -41.73988 -38.67665 -37.31532 -36.59138 -36.31004 -34.50142 -34.11705 -33.41616 -31.62166 -30.25396 -29.04103 -27.94672 -27.19300 -25.49886 -24.91235 -23.18276 -22.46082 -22.20021 -21.90473 -20.71523 -19.79486 -18.94103 -18.72254 -18.45580 -17.91734 -17.13761 -16.96146 -16.65098 -16.37716 -16.12097 -15.95021 -15.56357 -15.37034 -15.05919 -14.95547 -14.66839 -14.55022 -14.38738 -14.00316 -13.62680 -13.53135 -13.48414 -13.36108 -12.87462 -12.84399 -12.70072 -12.63529 -12.50832 -12.44383 -12.25098 -11.98647 -11.85897 -11.75824 -11.62438 -11.42587 -11.33174 -11.16572 -11.08227 -10.73575 -10.55070 -10.41398 -10.13420 -9.59246 -8.26354 -6.31407 0.61701 0.93731 1.37798 1.40852 1.42730 1.54372 1.55346 1.73498 2.14928 2.39999 2.47511 3.09730 3.28317 3.33377 3.55384 3.61562 3.71137 3.85813 3.90437 3.95982 4.01510 4.10869 4.19415 4.25387 4.29509 4.39885 4.45930 4.54249 4.56991 4.60872 4.66550 4.71402 4.88803 4.89313 4.96142 4.97675 4.99112 5.03932 5.05823 5.08220 5.24887 5.31370 5.40433 5.50597 5.60007 5.64863 5.69174 5.75810 5.80735 6.09289 6.12693 6.30821 6.77210 7.07211 7.33197 7.68153 8.90985 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.002602 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.354696 B =10756.961795 C =10878.032309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.201 4.201 3 C 0.138 3.862 4 N -0.456 5.456 5 C 0.200 3.800 6 C -0.026 4.026 7 C -0.082 4.082 8 C -0.007 4.007 9 C -0.534 4.534 10 H 0.022 0.978 11 C -0.001 4.001 12 N -0.957 5.957 13 Si 0.955 3.045 14 H -0.270 1.270 15 H -0.288 1.288 16 H -0.231 1.231 17 N -0.326 5.326 18 N -0.351 5.351 19 C 0.354 3.646 20 N -0.432 5.432 21 C 0.028 3.972 22 C 0.120 3.880 23 N -0.706 5.706 24 C 0.538 3.462 25 O -0.580 6.580 26 C 0.089 3.911 27 H 0.083 0.917 28 C -0.101 4.101 29 C -0.135 4.135 30 H 0.100 0.900 31 H 0.129 0.871 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.033 0.967 38 H 0.048 0.952 39 H 0.036 0.964 40 H 0.023 0.977 41 H 0.265 0.735 42 H 0.055 0.945 43 H 0.121 0.879 44 H 0.101 0.899 45 H 0.127 0.873 46 H 0.413 0.587 47 H 0.049 0.951 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.049 0.951 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.609 25.827 4.627 32.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.220 4.220 3 C 0.018 3.982 4 N -0.148 5.148 5 C -0.069 4.069 6 C -0.066 4.066 7 C -0.121 4.121 8 C -0.045 4.045 9 C -0.572 4.572 10 H 0.040 0.960 11 C -0.197 4.197 12 N -0.598 5.598 13 Si 0.778 3.222 14 H -0.195 1.195 15 H -0.214 1.214 16 H -0.154 1.154 17 N -0.165 5.165 18 N -0.195 5.195 19 C -0.003 4.003 20 N -0.159 5.159 21 C -0.098 4.098 22 C -0.004 4.004 23 N -0.358 5.358 24 C 0.324 3.676 25 O -0.460 6.460 26 C -0.022 4.022 27 H 0.101 0.899 28 C -0.140 4.140 29 C -0.193 4.193 30 H 0.119 0.881 31 H 0.147 0.853 32 H 0.103 0.897 33 H 0.149 0.851 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.139 0.861 44 H 0.119 0.881 45 H 0.144 0.856 46 H 0.251 0.749 47 H 0.068 0.932 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.068 0.932 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.035 25.233 5.856 31.564 hybrid contribution 0.273 -0.561 -0.618 0.878 sum -17.763 24.672 5.238 30.849 Atomic orbital electron populations 1.24063 0.94691 1.03556 0.94906 1.22928 0.97056 0.97326 1.04674 1.21292 0.91784 0.98084 0.87052 1.46405 1.09662 1.49202 1.09579 1.25155 0.82678 1.01396 0.97676 1.20223 0.99614 0.95597 0.91137 1.21228 0.99804 0.92852 0.98260 1.19506 0.96236 0.93569 0.95162 1.21499 1.31593 0.92858 1.11228 0.95995 1.26122 0.97369 0.95793 1.00401 1.70099 1.45505 1.09734 1.34442 0.85589 0.79156 0.80157 0.77321 1.19549 1.21371 1.15415 1.73976 1.23983 1.18498 1.00073 1.74454 0.96747 1.21412 1.26857 1.22290 0.91850 1.02872 0.83338 1.59325 1.21894 1.17978 1.16671 1.22949 0.98475 0.83458 1.04952 1.21811 0.92734 1.01232 0.84587 1.45515 1.29751 1.37243 1.23320 1.19667 0.84794 0.79299 0.83875 1.90767 1.68433 1.61808 1.24982 1.21625 0.96121 0.98183 0.86284 0.89943 1.21315 0.99490 0.91579 1.01567 1.21625 0.96460 1.00099 1.01070 0.88140 0.85283 0.89724 0.85085 0.86293 0.87951 0.86966 0.94818 0.93302 0.94552 0.95820 0.92602 0.92623 0.86137 0.88111 0.85556 0.74889 0.93216 0.90908 0.91206 0.93181 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 13.44 67.77 0.91 -0.88 16 2 C -0.20 -3.66 9.85 25.64 0.25 -3.41 16 3 C 0.14 1.99 6.51 85.63 0.56 2.55 16 4 N -0.46 -10.22 2.79 -518.91 -1.45 -11.67 16 5 C 0.20 5.78 7.32 137.64 1.01 6.79 16 6 C -0.03 -0.72 5.58 29.85 0.17 -0.56 16 7 C -0.08 -3.08 5.14 30.60 0.16 -2.92 16 8 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 9 C -0.53 -30.56 9.66 25.60 0.25 -30.31 16 10 H 0.02 1.41 7.99 -2.91 -0.02 1.39 16 11 C 0.00 -0.05 5.47 84.66 0.46 0.42 16 12 N -0.96 -60.45 13.96 21.45 0.30 -60.15 16 13 Si 0.96 42.75 27.47 68.60 1.88 44.64 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 15 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 16 H -0.23 -9.04 6.54 99.48 0.65 -8.39 16 17 N -0.33 -11.43 12.18 -49.54 -0.60 -12.03 16 18 N -0.35 -11.29 10.87 -58.00 -0.63 -11.92 16 19 C 0.35 8.51 5.78 260.11 1.50 10.01 16 20 N -0.43 -7.38 3.81 -686.31 -2.61 -10.00 16 21 C 0.03 0.25 5.53 86.25 0.48 0.73 16 22 C 0.12 0.35 7.39 86.47 0.64 0.99 16 23 N -0.71 -7.14 5.52 -466.06 -2.57 -9.71 16 24 C 0.54 10.64 6.14 87.68 0.54 11.18 16 25 O -0.58 -16.12 16.87 -3.02 -0.05 -16.17 16 26 C 0.09 1.94 1.96 44.03 0.09 2.02 16 27 H 0.08 2.08 7.63 -2.39 -0.02 2.06 16 28 C -0.10 -2.59 5.27 30.60 0.16 -2.43 16 29 C -0.14 -3.05 9.52 71.98 0.69 -2.36 16 30 H 0.10 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.13 0.91 7.84 -2.91 -0.02 0.89 16 32 H 0.08 2.19 7.34 -2.91 -0.02 2.17 16 33 H 0.13 0.92 7.48 -2.39 -0.02 0.90 16 34 H 0.12 1.42 7.09 -2.39 -0.02 1.41 16 35 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.11 2.31 7.17 -2.38 -0.02 2.29 16 37 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.84 7.42 -2.39 -0.02 1.82 16 39 H 0.04 1.46 7.20 -2.39 -0.02 1.44 16 40 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 41 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 42 H 0.06 0.63 8.08 -2.39 -0.02 0.61 16 43 H 0.12 0.59 7.71 -2.39 -0.02 0.57 16 44 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.13 -0.42 8.14 -2.39 -0.02 -0.44 16 46 H 0.41 2.99 8.84 -92.71 -0.82 2.17 16 47 H 0.05 1.53 7.03 -2.39 -0.02 1.51 16 48 H 0.07 1.97 7.84 -2.39 -0.02 1.95 16 49 H 0.07 1.49 6.78 -2.39 -0.02 1.48 16 50 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 51 H 0.05 1.17 6.98 -2.39 -0.02 1.16 16 Total: -1.00 -83.39 407.88 2.30 -81.09 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.06 Total: 14.29 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 7.97 Total: -8.37 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -7.57 Total: -115.48 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.05 Total: -16.17 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.88 Total: 44.64 kcal Total: -83.39 2.30 -81.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121591833.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.867 kcal (2) G-P(sol) polarization free energy of solvation -83.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds