Wall clock time and date at job start Wed Apr 1 2020 04:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46843 * 2 1 4 4 C 1.53003 * 109.46782 * 184.86375 * 3 2 1 5 5 C 1.53003 * 109.47204 * 185.15840 * 4 3 2 6 6 C 1.50698 * 115.55029 * 293.70771 * 5 4 3 7 7 O 1.21288 * 120.00343 * 99.27462 * 6 5 4 8 8 N 1.34779 * 119.99780 * 279.27470 * 6 5 4 9 9 C 1.46502 * 119.99818 * 184.79605 * 8 6 5 10 10 H 1.08997 * 110.78215 * 38.58744 * 9 8 6 11 11 C 1.54326 * 110.71841 * 275.35266 * 9 8 6 12 12 N 1.47027 * 107.26761 * 263.82607 * 11 9 8 13 13 C 1.36942 * 125.64669 * 181.02122 * 12 11 9 14 14 H 1.07994 * 120.00043 * 170.40891 * 13 12 11 15 15 C 1.38814 * 119.99767 * 350.41218 * 13 12 11 16 16 N 1.31620 * 119.99593 * 148.81630 * 15 13 12 17 17 Si 1.86794 * 120.00103 * 328.80945 * 15 13 12 18 18 H 1.48498 * 109.47140 * 85.88858 * 17 15 13 19 19 H 1.48503 * 109.47122 * 205.88533 * 17 15 13 20 20 H 1.48500 * 109.47574 * 325.88641 * 17 15 13 21 21 C 1.47421 * 108.70343 * 1.29483 * 12 11 9 22 22 C 1.55132 * 104.72326 * 335.54659 * 21 12 11 23 23 H 1.09000 * 111.18949 * 279.19610 * 22 21 12 24 24 N 1.46492 * 110.94110 * 155.29486 * 22 21 12 25 25 C 1.35312 * 125.86654 * 324.70921 * 24 22 21 26 26 C 1.35357 * 106.17613 * 180.02562 * 25 24 22 27 27 N 1.33766 * 106.49499 * 0.02562 * 26 25 24 28 28 N 1.28636 * 108.88744 * 359.73991 * 27 26 25 29 29 C 1.53000 * 117.51774 * 79.40293 * 5 4 3 30 30 C 1.52994 * 59.99881 * 107.48475 * 29 5 4 31 31 H 1.08998 * 109.47006 * 175.10255 * 1 2 3 32 32 H 1.08994 * 109.47095 * 295.10825 * 1 2 3 33 33 H 1.09004 * 109.46884 * 55.10736 * 1 2 3 34 34 H 1.09001 * 109.47337 * 240.00138 * 2 1 3 35 35 H 1.08996 * 109.47017 * 119.99822 * 2 1 3 36 36 H 1.08998 * 109.47366 * 64.86898 * 3 2 1 37 37 H 1.09000 * 109.47362 * 304.86488 * 3 2 1 38 38 H 1.09006 * 109.46969 * 65.15997 * 4 3 2 39 39 H 1.08996 * 109.47669 * 305.16059 * 4 3 2 40 40 H 0.96994 * 120.00418 * 4.79677 * 8 6 5 41 41 H 1.09002 * 109.88100 * 144.41494 * 11 9 8 42 42 H 1.08988 * 110.01352 * 23.31982 * 11 9 8 43 43 H 0.97003 * 120.00068 * 5.00999 * 16 15 13 44 44 H 1.08999 * 110.37094 * 94.48091 * 21 12 11 45 45 H 1.09007 * 110.36232 * 216.80210 * 21 12 11 46 46 H 1.07997 * 126.91561 * 359.97438 * 25 24 22 47 47 H 1.08001 * 126.75052 * 180.02562 * 26 25 24 48 48 H 1.09000 * 117.50388 * 214.97468 * 29 5 4 49 49 H 1.09006 * 117.49749 * 359.97438 * 29 5 4 50 50 H 1.09006 * 117.50248 * 252.51281 * 30 29 5 51 51 H 1.09004 * 117.50175 * 107.49235 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5651 1.4443 -0.1223 5 6 4.0855 2.8773 0.0067 6 6 3.6954 3.8133 -1.1080 7 8 2.7669 4.5795 -0.9596 8 7 4.3782 3.7991 -2.2699 9 6 4.0681 4.7791 -3.3138 10 1 3.8517 5.7540 -2.8770 11 6 2.8878 4.2961 -4.1829 12 7 3.4586 3.6499 -5.3739 13 6 2.7429 3.1039 -6.4059 14 1 3.2484 2.7909 -7.3074 15 6 1.3676 2.9529 -6.2931 16 7 0.6070 3.0314 -7.3644 17 14 0.5965 2.6382 -4.6211 18 1 0.3481 3.9335 -3.9389 19 1 -0.6896 1.9168 -4.7971 20 1 1.5178 1.8140 -3.7983 21 6 4.9288 3.6814 -5.2700 22 6 5.2324 4.8810 -4.3343 23 1 5.1935 5.8247 -4.8784 24 7 6.5279 4.7132 -3.6715 25 6 7.0602 3.5404 -3.2567 26 6 8.2573 3.8445 -2.7028 27 7 8.3965 5.1710 -2.8040 28 7 7.3573 5.6555 -3.3871 29 6 4.1982 3.4643 1.4152 30 6 5.4616 3.0743 0.6456 31 1 -0.3633 -1.0239 -0.0877 32 1 -0.3633 0.4360 0.9305 33 1 -0.3633 0.5879 -0.8430 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.7496 1.9306 0.9304 37 1 1.6072 1.9809 -0.8432 38 1 3.8522 1.0395 -1.0928 39 1 3.9938 0.8294 0.6690 40 1 5.0749 3.1400 -2.4150 41 1 2.2744 5.1464 -4.4806 42 1 2.2834 3.5799 -3.6264 43 1 1.0120 3.1219 -8.2412 44 1 5.2982 2.7536 -4.8332 45 1 5.3750 3.8437 -6.2512 46 1 6.6186 2.5591 -3.3482 47 1 8.9614 3.1523 -2.2652 48 1 3.9901 4.5275 1.5355 49 1 3.9011 2.8297 2.2502 50 1 5.9962 2.1830 0.9742 51 1 6.0850 3.8809 0.2595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129233159.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:23 Heat of formation + Delta-G solvation = 115.648432 kcal Electronic energy + Delta-G solvation = -32857.066211 eV Core-core repulsion = 28795.527074 eV Total energy + Delta-G solvation = -4061.539137 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.33817 -40.44338 -38.65661 -36.95981 -35.00748 -34.45988 -33.69102 -32.10181 -31.12612 -30.10463 -29.30309 -28.31424 -25.12902 -24.68566 -23.52567 -22.74128 -22.67561 -22.13841 -21.07627 -20.87580 -20.53276 -19.57257 -17.95664 -17.51634 -17.08442 -16.21088 -15.98321 -15.58279 -15.52571 -15.30676 -14.99505 -14.62489 -14.31996 -14.10999 -13.90897 -13.77457 -13.52768 -13.16286 -13.03735 -12.83857 -12.65948 -12.31550 -12.07967 -11.79913 -11.77329 -11.74474 -11.64070 -11.43881 -11.42328 -11.30886 -11.11497 -10.93475 -10.68146 -10.64270 -10.49278 -10.15176 -10.05551 -9.91352 -9.71278 -9.43530 -9.42471 -9.04067 -8.56741 -7.42407 -6.55306 -3.41185 1.55394 2.20549 2.55079 2.59503 2.99988 3.36982 3.40852 3.45433 3.56797 4.22904 4.29019 4.32720 4.43771 4.48351 4.52363 4.62249 4.71229 4.77193 4.85616 4.95968 4.98691 5.03544 5.12633 5.14017 5.22272 5.26072 5.36928 5.38862 5.43771 5.50045 5.63526 5.64713 5.69679 5.71525 5.82487 5.86039 5.88478 5.90976 5.92584 5.94862 6.09404 6.10473 6.14574 6.24602 6.33497 6.34864 6.50344 6.60678 7.35047 7.42667 8.12238 8.19531 8.49685 8.79261 9.33670 9.95685 10.92833 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.006927 B = 0.006423 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4041.041353 B = 4358.411145 C = 7557.916105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.122 4.122 4 C -0.074 4.074 5 C -0.155 4.155 6 C 0.554 3.446 7 O -0.526 6.526 8 N -0.717 5.717 9 C 0.131 3.869 10 H 0.108 0.892 11 C 0.112 3.888 12 N -0.596 5.596 13 C -0.347 4.347 14 H 0.082 0.918 15 C -0.005 4.005 16 N -0.900 5.900 17 Si 1.051 2.949 18 H -0.288 1.288 19 H -0.295 1.295 20 H -0.291 1.291 21 C 0.133 3.867 22 C 0.115 3.885 23 H 0.140 0.860 24 N -0.268 5.268 25 C -0.056 4.056 26 C -0.050 4.050 27 N -0.277 5.277 28 N -0.081 5.081 29 C -0.142 4.142 30 C -0.162 4.162 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.397 0.603 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.267 0.733 44 H 0.032 0.968 45 H 0.065 0.935 46 H 0.187 0.813 47 H 0.188 0.812 48 H 0.099 0.901 49 H 0.104 0.896 50 H 0.105 0.895 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.142 -4.681 15.621 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.159 4.159 4 C -0.111 4.111 5 C -0.158 4.158 6 C 0.340 3.660 7 O -0.401 6.401 8 N -0.371 5.371 9 C 0.024 3.976 10 H 0.126 0.874 11 C -0.014 4.014 12 N -0.324 5.324 13 C -0.473 4.473 14 H 0.099 0.901 15 C -0.208 4.208 16 N -0.539 5.539 17 Si 0.883 3.117 18 H -0.216 1.216 19 H -0.222 1.222 20 H -0.219 1.219 21 C 0.005 3.995 22 C 0.011 3.989 23 H 0.158 0.842 24 N -0.062 5.062 25 C -0.207 4.207 26 C -0.208 4.208 27 N -0.142 5.142 28 N -0.061 5.061 29 C -0.179 4.179 30 C -0.199 4.199 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.234 0.766 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.049 0.951 45 H 0.084 0.916 46 H 0.204 0.796 47 H 0.205 0.795 48 H 0.118 0.882 49 H 0.122 0.878 50 H 0.123 0.877 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.222 -2.804 16.320 18.488 hybrid contribution 1.475 -1.463 -0.924 2.274 sum 9.697 -4.267 15.396 18.689 Atomic orbital electron populations 1.21785 0.95802 1.01613 1.02026 1.21518 0.96162 0.96626 1.01766 1.21611 0.94431 0.96932 1.02929 1.21093 0.96282 0.91052 1.02700 1.21461 1.02705 0.97246 0.94422 1.19507 0.81677 0.82815 0.82019 1.90722 1.27729 1.40287 1.81382 1.46017 1.40160 1.35354 1.15609 1.22348 0.93807 0.93853 0.87600 0.87387 1.22122 0.93858 0.97534 0.87857 1.44706 0.98530 1.67623 1.21556 1.19899 0.91388 1.43135 0.92893 0.90063 1.25704 0.92093 0.98162 1.04874 1.70939 1.36463 1.47044 0.99455 0.83951 0.75295 0.77181 0.75256 1.21558 1.22250 1.21865 1.21859 0.88491 0.92225 0.96963 1.23579 0.76126 1.05000 0.94225 0.84216 1.47361 1.15606 1.05335 1.37855 1.23569 0.97684 0.93310 1.06117 1.23550 0.97614 0.93735 1.05896 1.75103 1.15627 1.08925 1.14555 1.78337 0.96733 1.15782 1.15236 1.22954 1.00189 1.02161 0.92611 1.23121 0.89909 1.03805 1.03047 0.92771 0.92816 0.92438 0.91935 0.92195 0.91543 0.91646 0.91133 0.90717 0.76559 0.92255 0.93613 0.92226 0.95059 0.91633 0.79609 0.79480 0.88222 0.87790 0.87714 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.34 16 2 C -0.12 -1.33 5.93 -26.73 -0.16 -1.49 16 3 C -0.12 -1.49 5.03 -26.73 -0.13 -1.62 16 4 C -0.07 -0.78 5.09 -26.73 -0.14 -0.92 16 5 C -0.16 -1.80 1.86 -155.66 -0.29 -2.09 16 6 C 0.55 8.57 6.50 -10.99 -0.07 8.50 16 7 O -0.53 -10.09 16.82 5.55 0.09 -10.00 16 8 N -0.72 -10.47 4.71 -52.03 -0.25 -10.71 16 9 C 0.13 2.12 3.06 -66.09 -0.20 1.92 16 10 H 0.11 1.76 7.83 -51.93 -0.41 1.35 16 11 C 0.11 2.30 4.73 -3.06 -0.01 2.29 16 12 N -0.60 -12.95 3.28 -169.93 -0.56 -13.51 16 13 C -0.35 -9.10 10.38 -15.06 -0.16 -9.26 16 14 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 15 C 0.00 -0.14 5.39 -17.43 -0.09 -0.23 16 16 N -0.90 -26.79 13.70 55.49 0.76 -26.03 16 17 Si 1.05 26.06 24.80 -169.99 -4.22 21.84 16 18 H -0.29 -7.06 6.78 56.52 0.38 -6.68 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.29 -6.85 6.92 56.52 0.39 -6.46 16 21 C 0.13 2.22 6.65 -2.41 -0.02 2.20 16 22 C 0.11 1.67 3.98 -65.67 -0.26 1.41 16 23 H 0.14 1.96 8.14 -51.93 -0.42 1.54 16 24 N -0.27 -3.63 3.19 -52.57 -0.17 -3.80 16 25 C -0.06 -0.62 8.48 -17.04 -0.14 -0.76 16 26 C -0.05 -0.56 12.05 -17.74 -0.21 -0.77 16 27 N -0.28 -4.05 12.41 30.24 0.38 -3.68 16 28 N -0.08 -1.25 13.17 60.35 0.79 -0.46 16 29 C -0.14 -1.43 9.88 -26.73 -0.26 -1.70 16 30 C -0.16 -1.47 9.92 -26.74 -0.27 -1.73 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.02 7.90 -51.93 -0.41 0.61 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 40 H 0.40 4.95 5.43 -40.82 -0.22 4.73 16 41 H 0.06 1.29 8.01 -51.93 -0.42 0.88 16 42 H 0.05 1.04 3.87 -51.94 -0.20 0.84 16 43 H 0.27 7.81 8.73 -40.82 -0.36 7.45 16 44 H 0.03 0.49 6.45 -51.93 -0.34 0.15 16 45 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 46 H 0.19 1.61 6.32 -52.49 -0.33 1.28 16 47 H 0.19 1.37 8.06 -52.49 -0.42 0.94 16 48 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 50 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 51 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 406.32 15.07 6.12 6.12 Total: -1.00 -32.56 406.32 -7.36 -39.92 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.26 Total: 5.89 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.05 Total: -5.59 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.96 Total: -58.18 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -4.22 Total: 21.84 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.56 -7.36 -39.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129233159.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.568 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds