Wall clock time and date at job start Wed Apr 1 2020 04:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46843 * 2 1 4 4 C 1.53003 * 109.46782 * 184.86375 * 3 2 1 5 5 C 1.53003 * 109.47204 * 185.15840 * 4 3 2 6 6 C 1.50698 * 115.55029 * 293.70771 * 5 4 3 7 7 O 1.21288 * 120.00343 * 99.27462 * 6 5 4 8 8 N 1.34779 * 119.99780 * 279.27470 * 6 5 4 9 9 C 1.46502 * 119.99818 * 184.79605 * 8 6 5 10 10 H 1.08997 * 110.78215 * 38.58744 * 9 8 6 11 11 C 1.54326 * 110.71841 * 275.35266 * 9 8 6 12 12 N 1.47027 * 107.26761 * 263.82607 * 11 9 8 13 13 C 1.36942 * 125.64669 * 181.02122 * 12 11 9 14 14 H 1.07994 * 120.00043 * 170.40891 * 13 12 11 15 15 C 1.38814 * 119.99767 * 350.41218 * 13 12 11 16 16 N 1.31620 * 119.99593 * 148.81630 * 15 13 12 17 17 Si 1.86794 * 120.00103 * 328.80945 * 15 13 12 18 18 H 1.48498 * 109.47140 * 85.88858 * 17 15 13 19 19 H 1.48503 * 109.47122 * 205.88533 * 17 15 13 20 20 H 1.48500 * 109.47574 * 325.88641 * 17 15 13 21 21 C 1.47421 * 108.70343 * 1.29483 * 12 11 9 22 22 C 1.55132 * 104.72326 * 335.54659 * 21 12 11 23 23 H 1.09000 * 111.18949 * 279.19610 * 22 21 12 24 24 N 1.46492 * 110.94110 * 155.29486 * 22 21 12 25 25 C 1.35312 * 125.86654 * 324.70921 * 24 22 21 26 26 C 1.35357 * 106.17613 * 180.02562 * 25 24 22 27 27 N 1.33766 * 106.49499 * 0.02562 * 26 25 24 28 28 N 1.28636 * 108.88744 * 359.73991 * 27 26 25 29 29 C 1.53000 * 117.51774 * 79.40293 * 5 4 3 30 30 C 1.52994 * 59.99881 * 107.48475 * 29 5 4 31 31 H 1.08998 * 109.47006 * 175.10255 * 1 2 3 32 32 H 1.08994 * 109.47095 * 295.10825 * 1 2 3 33 33 H 1.09004 * 109.46884 * 55.10736 * 1 2 3 34 34 H 1.09001 * 109.47337 * 240.00138 * 2 1 3 35 35 H 1.08996 * 109.47017 * 119.99822 * 2 1 3 36 36 H 1.08998 * 109.47366 * 64.86898 * 3 2 1 37 37 H 1.09000 * 109.47362 * 304.86488 * 3 2 1 38 38 H 1.09006 * 109.46969 * 65.15997 * 4 3 2 39 39 H 1.08996 * 109.47669 * 305.16059 * 4 3 2 40 40 H 0.96994 * 120.00418 * 4.79677 * 8 6 5 41 41 H 1.09002 * 109.88100 * 144.41494 * 11 9 8 42 42 H 1.08988 * 110.01352 * 23.31982 * 11 9 8 43 43 H 0.97003 * 120.00068 * 5.00999 * 16 15 13 44 44 H 1.08999 * 110.37094 * 94.48091 * 21 12 11 45 45 H 1.09007 * 110.36232 * 216.80210 * 21 12 11 46 46 H 1.07997 * 126.91561 * 359.97438 * 25 24 22 47 47 H 1.08001 * 126.75052 * 180.02562 * 26 25 24 48 48 H 1.09000 * 117.50388 * 214.97468 * 29 5 4 49 49 H 1.09006 * 117.49749 * 359.97438 * 29 5 4 50 50 H 1.09006 * 117.50248 * 252.51281 * 30 29 5 51 51 H 1.09004 * 117.50175 * 107.49235 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5651 1.4443 -0.1223 5 6 4.0855 2.8773 0.0067 6 6 3.6954 3.8133 -1.1080 7 8 2.7669 4.5795 -0.9596 8 7 4.3782 3.7991 -2.2699 9 6 4.0681 4.7791 -3.3138 10 1 3.8517 5.7540 -2.8770 11 6 2.8878 4.2961 -4.1829 12 7 3.4586 3.6499 -5.3739 13 6 2.7429 3.1039 -6.4059 14 1 3.2484 2.7909 -7.3074 15 6 1.3676 2.9529 -6.2931 16 7 0.6070 3.0314 -7.3644 17 14 0.5965 2.6382 -4.6211 18 1 0.3481 3.9335 -3.9389 19 1 -0.6896 1.9168 -4.7971 20 1 1.5178 1.8140 -3.7983 21 6 4.9288 3.6814 -5.2700 22 6 5.2324 4.8810 -4.3343 23 1 5.1935 5.8247 -4.8784 24 7 6.5279 4.7132 -3.6715 25 6 7.0602 3.5404 -3.2567 26 6 8.2573 3.8445 -2.7028 27 7 8.3965 5.1710 -2.8040 28 7 7.3573 5.6555 -3.3871 29 6 4.1982 3.4643 1.4152 30 6 5.4616 3.0743 0.6456 31 1 -0.3633 -1.0239 -0.0877 32 1 -0.3633 0.4360 0.9305 33 1 -0.3633 0.5879 -0.8430 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.7496 1.9306 0.9304 37 1 1.6072 1.9809 -0.8432 38 1 3.8522 1.0395 -1.0928 39 1 3.9938 0.8294 0.6690 40 1 5.0749 3.1400 -2.4150 41 1 2.2744 5.1464 -4.4806 42 1 2.2834 3.5799 -3.6264 43 1 1.0120 3.1219 -8.2412 44 1 5.2982 2.7536 -4.8332 45 1 5.3750 3.8437 -6.2512 46 1 6.6186 2.5591 -3.3482 47 1 8.9614 3.1523 -2.2652 48 1 3.9901 4.5275 1.5355 49 1 3.9011 2.8297 2.2502 50 1 5.9962 2.1830 0.9742 51 1 6.0850 3.8809 0.2595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129233159.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:22 Heat of formation + Delta-G solvation = 93.649625 kcal Electronic energy + Delta-G solvation = -32858.020151 eV Core-core repulsion = 28795.527074 eV Total energy + Delta-G solvation = -4062.493076 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.35588 -41.61409 -39.94103 -38.05218 -36.05756 -35.85921 -34.87549 -33.96637 -32.09273 -31.00462 -30.76065 -29.74892 -26.52173 -25.96612 -24.58260 -23.75393 -23.51732 -23.33399 -22.45296 -21.91991 -21.78832 -20.70640 -19.73360 -18.84004 -18.09607 -17.49039 -17.09779 -16.86150 -16.59005 -16.51140 -16.00908 -15.94856 -15.70891 -15.52453 -14.99021 -14.86810 -14.75853 -14.41214 -14.33196 -14.12848 -13.90356 -13.66896 -13.25760 -13.15069 -13.03032 -12.91163 -12.72914 -12.58076 -12.56723 -12.44979 -12.26996 -12.02505 -11.95393 -11.86079 -11.51346 -11.50442 -11.32069 -11.15862 -10.97425 -10.80251 -10.65224 -10.46959 -10.29350 -9.36312 -8.73004 -5.51190 0.55764 1.08439 1.34673 1.36354 1.41853 1.54955 1.62046 1.88203 2.37781 2.64910 2.82913 2.95581 3.08491 3.22455 3.47983 3.53041 3.61091 3.68586 3.82019 3.88310 3.94968 4.04018 4.08683 4.16013 4.17558 4.28185 4.30346 4.41490 4.52171 4.58017 4.62543 4.66754 4.69343 4.71718 4.76784 4.78969 4.87114 4.95295 4.99449 5.06433 5.10411 5.14274 5.18494 5.24615 5.28469 5.37660 5.44942 5.45109 5.55586 5.99666 6.27105 6.68192 7.02768 7.32726 7.49755 7.94388 8.76521 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.006927 B = 0.006423 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4041.041353 B = 4358.411145 C = 7557.916105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.120 4.120 3 C -0.122 4.122 4 C -0.067 4.067 5 C -0.171 4.171 6 C 0.547 3.453 7 O -0.573 6.573 8 N -0.709 5.709 9 C 0.142 3.858 10 H 0.105 0.895 11 C 0.112 3.888 12 N -0.611 5.611 13 C -0.320 4.320 14 H 0.066 0.934 15 C -0.055 4.055 16 N -0.941 5.941 17 Si 1.088 2.912 18 H -0.294 1.294 19 H -0.304 1.304 20 H -0.275 1.275 21 C 0.134 3.866 22 C 0.136 3.864 23 H 0.144 0.856 24 N -0.272 5.272 25 C -0.052 4.052 26 C -0.039 4.039 27 N -0.301 5.301 28 N -0.116 5.116 29 C -0.144 4.144 30 C -0.132 4.132 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.030 0.970 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.019 0.981 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.409 0.591 41 H 0.037 0.963 42 H 0.028 0.972 43 H 0.258 0.742 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.215 0.785 47 H 0.228 0.772 48 H 0.079 0.921 49 H 0.128 0.872 50 H 0.140 0.860 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.414 -6.850 18.488 23.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.158 4.158 3 C -0.160 4.160 4 C -0.105 4.105 5 C -0.175 4.175 6 C 0.335 3.665 7 O -0.451 6.451 8 N -0.364 5.364 9 C 0.034 3.966 10 H 0.123 0.877 11 C -0.015 4.015 12 N -0.339 5.339 13 C -0.448 4.448 14 H 0.084 0.916 15 C -0.253 4.253 16 N -0.583 5.583 17 Si 0.918 3.082 18 H -0.222 1.222 19 H -0.232 1.232 20 H -0.201 1.201 21 C 0.007 3.993 22 C 0.031 3.969 23 H 0.161 0.839 24 N -0.066 5.066 25 C -0.203 4.203 26 C -0.196 4.196 27 N -0.165 5.165 28 N -0.094 5.094 29 C -0.182 4.182 30 C -0.169 4.169 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.038 0.962 38 H 0.086 0.914 39 H 0.130 0.870 40 H 0.249 0.751 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.232 0.768 47 H 0.244 0.756 48 H 0.097 0.903 49 H 0.147 0.853 50 H 0.158 0.842 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.582 -4.977 19.212 22.979 hybrid contribution 0.578 -0.767 -1.802 2.042 sum 12.160 -5.744 17.410 21.999 Atomic orbital electron populations 1.21835 0.96501 1.01994 1.01356 1.21524 0.95620 0.95745 1.02867 1.21605 0.96015 0.97350 1.01039 1.21116 0.94710 0.90708 1.03954 1.21439 1.05528 0.96899 0.93592 1.20358 0.80731 0.82649 0.82807 1.90697 1.29758 1.42425 1.82244 1.45963 1.40228 1.35155 1.15007 1.22031 0.92920 0.93971 0.87681 0.87737 1.22050 0.95388 0.96135 0.87891 1.44616 1.00922 1.67307 1.21077 1.19826 0.91401 1.40250 0.93340 0.91631 1.26412 0.93345 0.99389 1.06107 1.71008 1.36981 1.50838 0.99511 0.83426 0.74732 0.76882 0.73127 1.22212 1.23215 1.20101 1.21991 0.85127 0.94121 0.98018 1.23139 0.76439 1.04236 0.93054 0.83864 1.47215 1.14946 1.06186 1.38205 1.24136 0.97681 0.93485 1.04979 1.24220 0.97966 0.92833 1.04604 1.75089 1.15580 1.10952 1.14928 1.78369 0.97506 1.16646 1.16891 1.23057 1.01129 1.01495 0.92479 1.23221 0.88618 1.04590 1.00487 0.91486 0.91943 0.95088 0.92450 0.89285 0.91317 0.96208 0.91442 0.86966 0.75110 0.94487 0.95433 0.93228 0.92264 0.91318 0.76808 0.75558 0.90268 0.85345 0.84190 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.91 71.98 0.71 -2.66 16 2 C -0.12 -2.33 5.93 30.60 0.18 -2.15 16 3 C -0.12 -2.83 5.03 30.60 0.15 -2.68 16 4 C -0.07 -1.20 5.09 30.60 0.16 -1.04 16 5 C -0.17 -3.50 1.86 -52.93 -0.10 -3.60 16 6 C 0.55 16.43 6.50 87.66 0.57 17.00 16 7 O -0.57 -22.48 16.82 -3.05 -0.05 -22.53 16 8 N -0.71 -19.54 4.71 -436.90 -2.06 -21.59 16 9 C 0.14 4.52 3.06 46.18 0.14 4.66 16 10 H 0.10 3.45 7.83 -2.39 -0.02 3.43 16 11 C 0.11 4.64 4.73 86.73 0.41 5.05 16 12 N -0.61 -26.38 3.28 -691.54 -2.27 -28.65 16 13 C -0.32 -16.99 10.38 84.03 0.87 -16.12 16 14 H 0.07 3.65 8.06 -2.91 -0.02 3.63 16 15 C -0.05 -3.14 5.39 84.86 0.46 -2.68 16 16 N -0.94 -58.06 13.70 21.65 0.30 -57.76 16 17 Si 1.09 55.03 24.80 68.60 1.70 56.73 16 18 H -0.29 -14.96 6.78 99.48 0.67 -14.28 16 19 H -0.30 -15.64 7.11 99.48 0.71 -14.94 16 20 H -0.27 -12.88 6.92 99.48 0.69 -12.19 16 21 C 0.13 4.21 6.65 86.93 0.58 4.79 16 22 C 0.14 3.75 3.98 46.46 0.18 3.94 16 23 H 0.14 3.89 8.14 -2.39 -0.02 3.87 16 24 N -0.27 -6.68 3.19 -320.23 -1.02 -7.70 16 25 C -0.05 -0.94 8.48 83.49 0.71 -0.23 16 26 C -0.04 -0.68 12.05 83.73 1.01 0.33 16 27 N -0.30 -7.98 12.41 -58.25 -0.72 -8.70 16 28 N -0.12 -3.34 13.17 37.02 0.49 -2.85 16 29 C -0.14 -2.49 9.88 30.59 0.30 -2.19 16 30 C -0.13 -1.81 9.92 30.59 0.30 -1.51 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.02 0.62 7.90 -2.39 -0.02 0.60 16 38 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.11 1.20 8.08 -2.39 -0.02 1.18 16 40 H 0.41 8.90 5.43 -92.71 -0.50 8.40 16 41 H 0.04 1.69 8.01 -2.39 -0.02 1.67 16 42 H 0.03 1.28 3.87 -2.39 -0.01 1.27 16 43 H 0.26 15.73 8.73 -92.71 -0.81 14.92 16 44 H 0.06 1.60 6.45 -2.39 -0.02 1.59 16 45 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 46 H 0.22 2.52 6.32 -2.91 -0.02 2.50 16 47 H 0.23 1.97 8.06 -2.91 -0.02 1.94 16 48 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 50 H 0.14 1.00 8.14 -2.38 -0.02 0.98 16 51 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -75.94 406.32 3.34 -72.59 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.34 Total: 19.55 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 6.64 Total: 0.91 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -5.29 Total: -127.25 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal Atomic # 14 Polarization: 55.03 SS G_CDS: 1.70 Total: 56.73 kcal Total: -75.94 3.34 -72.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129233159.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.242 kcal (2) G-P(sol) polarization free energy of solvation -75.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds