Wall clock time and date at job start Wed Apr 1 2020 05:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47034 * 2 1 4 4 C 1.32997 * 120.00135 * 125.41147 * 3 2 1 5 5 C 1.50697 * 119.99619 * 5.18738 * 4 3 2 6 6 C 1.47104 * 120.00356 * 185.18723 * 4 3 2 7 7 O 1.21611 * 119.99826 * 255.45873 * 6 4 3 8 8 N 1.34777 * 119.99701 * 75.73467 * 6 4 3 9 9 C 1.46927 * 120.63153 * 4.77096 * 8 6 4 10 10 C 1.53185 * 108.77523 * 233.58569 * 9 8 6 11 11 C 1.53044 * 109.31443 * 305.36804 * 10 9 8 12 12 C 1.53041 * 109.53729 * 61.36657 * 11 10 9 13 13 H 1.09003 * 109.49867 * 58.61947 * 12 11 10 14 14 N 1.46494 * 109.49556 * 178.68343 * 12 11 10 15 15 C 1.35311 * 125.87098 * 84.99862 * 14 12 11 16 16 C 1.35353 * 106.17885 * 179.97438 * 15 14 12 17 17 C 1.50699 * 126.75196 * 180.02562 * 16 15 14 18 18 N 1.46499 * 109.46952 * 94.99853 * 17 16 15 19 19 C 1.36946 * 119.99645 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00081 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99736 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00170 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99796 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47102 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46722 * 120.00348 * 23 21 19 26 26 H 1.48493 * 109.47165 * 240.00253 * 23 21 19 27 27 N 1.33770 * 106.49448 * 0.02562 * 16 15 14 28 28 N 1.28639 * 108.88802 * 359.73542 * 27 16 15 29 29 C 1.46925 * 120.62763 * 184.49444 * 8 6 4 30 30 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46758 * 299.99504 * 1 2 3 32 32 H 1.08996 * 109.47514 * 59.99600 * 1 2 3 33 33 H 1.09005 * 109.46758 * 240.00496 * 2 1 3 34 34 H 1.08997 * 109.46991 * 120.00392 * 2 1 3 35 35 H 1.08006 * 120.00424 * 305.41390 * 3 2 1 36 36 H 1.09001 * 109.47085 * 174.96417 * 5 4 3 37 37 H 1.09000 * 109.47626 * 294.97292 * 5 4 3 38 38 H 1.09001 * 109.47203 * 54.96988 * 5 4 3 39 39 H 1.08996 * 109.58662 * 353.37813 * 9 8 6 40 40 H 1.09000 * 109.58178 * 113.80219 * 9 8 6 41 41 H 1.09005 * 109.50128 * 65.32090 * 10 9 8 42 42 H 1.08997 * 109.50098 * 185.41414 * 10 9 8 43 43 H 1.09003 * 109.45673 * 181.38368 * 11 10 9 44 44 H 1.09002 * 109.45903 * 301.35595 * 11 10 9 45 45 H 1.08002 * 126.91189 * 0.02562 * 15 14 12 46 46 H 1.08994 * 109.47082 * 214.99997 * 17 16 15 47 47 H 1.09007 * 109.47198 * 334.99753 * 17 16 15 48 48 H 0.96995 * 120.00338 * 359.97438 * 18 17 16 49 49 H 0.96992 * 120.00081 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.58835 * 246.19756 * 29 8 6 51 51 H 1.09003 * 109.58561 * 6.63066 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8832 1.8253 0.9387 5 6 3.4358 0.8356 1.9318 6 6 3.2850 3.2388 1.0076 7 8 4.3863 3.5775 0.6186 8 7 2.4346 4.1574 1.5070 9 6 1.1454 3.7498 2.0820 10 6 0.0276 4.5426 1.3975 11 6 0.3233 6.0395 1.5155 12 6 1.6432 6.3577 0.8093 13 1 1.5760 6.0624 -0.2378 14 7 1.9097 7.7956 0.8957 15 6 2.5116 8.4298 1.9283 16 6 2.5535 9.7405 1.5931 17 6 3.1303 10.8637 2.4158 18 7 4.5123 11.1142 1.9992 19 6 5.2440 12.0975 2.6101 20 1 4.8024 12.6879 3.3992 21 6 6.5536 12.3346 2.2157 22 7 7.0920 11.6147 1.2543 23 14 7.5515 13.6763 3.0485 24 1 6.7226 14.3359 4.0893 25 1 8.7549 13.0782 3.6803 26 1 7.9702 14.6810 2.0384 27 7 1.9822 9.8428 0.3879 28 7 1.6161 8.6722 -0.0001 29 6 2.7818 5.5850 1.4923 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.7014 2.1107 -0.7623 36 1 4.1777 1.3277 2.5607 37 1 2.6262 0.4552 2.5546 38 1 3.9032 0.0080 1.3983 39 1 0.9919 2.6836 1.9157 40 1 1.1398 3.9594 3.1516 41 1 -0.0242 4.2638 0.3450 42 1 -0.9241 4.3206 1.8803 43 1 -0.4832 6.6067 1.0506 44 1 0.3996 6.3127 2.5680 45 1 2.8844 7.9805 2.8369 46 1 2.5366 11.7654 2.2665 47 1 3.1130 10.5878 3.4702 48 1 4.9091 10.5837 1.2907 49 1 8.0070 11.7806 0.9785 50 1 2.9069 5.9412 2.5148 51 1 3.7083 5.7300 0.9366 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185884792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:40 Heat of formation + Delta-G solvation = 89.623374 kcal Electronic energy + Delta-G solvation = -30512.744814 eV Core-core repulsion = 26450.077147 eV Total energy + Delta-G solvation = -4062.667668 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.01829 -40.78452 -38.18023 -36.72015 -35.16844 -34.32800 -32.78744 -32.28019 -31.84857 -30.18102 -29.87674 -27.65946 -26.47627 -25.81468 -24.78453 -23.90478 -22.77943 -22.32330 -21.31586 -20.63800 -20.21615 -18.72662 -17.65945 -17.27630 -16.83852 -16.62002 -16.03080 -15.74248 -15.20664 -15.12081 -14.67818 -14.56757 -14.52240 -14.48131 -14.10442 -13.68479 -13.57739 -13.47329 -13.40957 -13.07744 -12.85515 -12.68895 -12.61128 -12.33522 -12.30821 -11.93718 -11.80098 -11.73091 -11.60388 -11.44773 -11.40352 -11.21347 -10.84897 -10.79106 -10.46768 -10.25611 -10.02587 -9.86311 -9.68913 -9.40343 -9.20656 -8.85151 -8.80547 -6.87108 -5.69199 -2.99098 1.19629 1.83559 2.13474 2.18399 2.73661 2.94911 3.48843 3.53822 3.56660 3.86302 3.95328 4.15063 4.23909 4.30660 4.39499 4.51924 4.56965 4.64320 4.66208 4.73707 4.75470 4.81663 4.94332 5.05958 5.09530 5.10642 5.12279 5.16452 5.21108 5.31045 5.34933 5.38004 5.43182 5.46022 5.50832 5.52988 5.61904 5.62900 5.67546 5.83300 5.89285 5.94519 6.06695 6.21969 6.43613 6.68711 6.77208 6.82638 6.83792 7.68718 7.75645 8.47746 8.86836 9.59465 10.15526 10.51317 11.53519 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.002147 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.052387 B =13040.934663 C =14168.369985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.112 4.112 4 C -0.160 4.160 5 C -0.105 4.105 6 C 0.558 3.442 7 O -0.524 6.524 8 N -0.605 5.605 9 C 0.102 3.898 10 C -0.129 4.129 11 C -0.131 4.131 12 C 0.138 3.862 13 H 0.114 0.886 14 N -0.294 5.294 15 C -0.046 4.046 16 C -0.002 4.002 17 C 0.233 3.767 18 N -0.726 5.726 19 C -0.239 4.239 20 H 0.074 0.926 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 N -0.253 5.253 28 N -0.094 5.094 29 C 0.104 3.896 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.187 0.813 46 H 0.039 0.961 47 H 0.037 0.963 48 H 0.386 0.614 49 H 0.255 0.745 50 H 0.086 0.914 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.086 -29.482 2.775 35.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.139 4.139 3 C -0.131 4.131 4 C -0.163 4.163 5 C -0.162 4.162 6 C 0.347 3.653 7 O -0.399 6.399 8 N -0.340 5.340 9 C -0.021 4.021 10 C -0.168 4.168 11 C -0.169 4.169 12 C 0.034 3.966 13 H 0.132 0.868 14 N -0.088 5.088 15 C -0.196 4.196 16 C -0.140 4.140 17 C 0.104 3.896 18 N -0.371 5.371 19 C -0.370 4.370 20 H 0.092 0.908 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 N -0.120 5.120 28 N -0.072 5.072 29 C -0.020 4.020 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.204 0.796 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.104 0.896 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.068 -28.923 1.285 34.667 hybrid contribution 1.235 0.357 1.081 1.680 sum -17.833 -28.566 2.366 33.758 Atomic orbital electron populations 1.21699 0.94425 1.02103 1.02226 1.20750 0.96427 0.93421 1.03348 1.23326 0.94855 0.98217 0.96716 1.21344 1.00550 0.93318 1.01110 1.20688 1.00945 0.97264 0.97281 1.18670 0.84136 0.85953 0.76583 1.90884 1.20583 1.81265 1.47138 1.47974 1.19364 1.05814 1.60824 1.21902 0.81732 1.00493 0.97939 1.21904 0.98896 0.93721 1.02313 1.21973 0.95935 0.97166 1.01858 1.21929 0.96487 0.74728 1.03449 0.86846 1.47215 1.39899 1.08559 1.13136 1.23325 1.05610 0.93769 0.96888 1.22468 1.02283 0.94942 0.94338 1.18945 0.87007 0.90687 0.92995 1.42319 1.07755 1.42395 1.44602 1.19271 0.93837 1.09822 1.14111 0.90832 1.24776 0.97336 0.99856 0.99049 1.69694 1.14456 1.42308 1.31439 0.86086 0.80094 0.81319 0.78487 1.20478 1.21939 1.21874 1.75098 1.12770 1.12992 1.11155 1.78283 1.20816 0.93109 1.15033 1.21945 0.97973 0.79686 1.02415 0.92160 0.92459 0.92406 0.90425 0.90498 0.86658 0.91531 0.90706 0.90596 0.88674 0.90574 0.90751 0.89282 0.89963 0.90296 0.79637 0.94338 0.94527 0.78075 0.93551 0.89630 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 9.89 37.16 0.37 -0.04 16 2 C -0.10 -0.38 6.16 -27.88 -0.17 -0.55 16 3 C -0.11 -0.63 8.41 -36.13 -0.30 -0.94 16 4 C -0.16 -1.17 4.11 -102.85 -0.42 -1.60 16 5 C -0.10 -0.59 8.56 36.00 0.31 -0.28 16 6 C 0.56 5.98 6.99 -12.66 -0.09 5.89 16 7 O -0.52 -8.23 16.54 5.27 0.09 -8.15 16 8 N -0.61 -5.10 2.97 -173.90 -0.52 -5.61 16 9 C 0.10 0.48 6.30 -3.71 -0.02 0.46 16 10 C -0.13 -0.55 6.08 -26.61 -0.16 -0.71 16 11 C -0.13 -0.91 5.49 -26.69 -0.15 -1.06 16 12 C 0.14 1.39 3.29 -67.59 -0.22 1.17 16 13 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 14 N -0.29 -4.27 3.26 -54.43 -0.18 -4.44 16 15 C -0.05 -0.71 10.61 -17.05 -0.18 -0.89 16 16 C 0.00 -0.05 6.62 -82.78 -0.55 -0.60 16 17 C 0.23 5.01 6.82 -5.19 -0.04 4.98 16 18 N -0.73 -19.50 5.59 -61.08 -0.34 -19.84 16 19 C -0.24 -6.90 9.99 -15.05 -0.15 -7.05 16 20 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -29.42 13.06 55.49 0.72 -28.70 16 23 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 N -0.25 -5.31 12.41 33.29 0.41 -4.89 16 28 N -0.09 -1.72 13.17 60.35 0.79 -0.92 16 29 C 0.10 1.06 5.47 -3.49 -0.02 1.04 16 30 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.23 5.93 -51.93 -0.31 -0.07 16 35 H 0.12 0.68 8.05 -52.48 -0.42 0.26 16 36 H 0.07 0.46 7.99 -51.93 -0.42 0.04 16 37 H 0.07 0.25 7.71 -51.93 -0.40 -0.15 16 38 H 0.08 0.38 7.86 -51.93 -0.41 -0.03 16 39 H 0.10 0.33 5.79 -51.93 -0.30 0.03 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.19 2.27 7.18 -52.49 -0.38 1.89 16 46 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.39 11.24 7.66 -40.82 -0.31 10.92 16 49 H 0.25 7.74 8.31 -40.82 -0.34 7.41 16 50 H 0.09 0.78 6.93 -51.93 -0.36 0.42 16 51 H 0.11 1.45 7.03 -51.93 -0.37 1.09 16 LS Contribution 414.12 15.07 6.24 6.24 Total: -1.00 -37.61 414.12 -7.98 -45.60 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -8.29 Total: 3.45 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.89 Total: -0.69 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: 0.90 Total: -64.41 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.09 Total: -8.15 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -37.61 -7.98 -45.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185884792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.219 kcal (2) G-P(sol) polarization free energy of solvation -37.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds