Wall clock time and date at job start Wed Apr 1 2020 05:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47034 * 2 1 4 4 C 1.32997 * 120.00135 * 125.41147 * 3 2 1 5 5 C 1.50697 * 119.99619 * 5.18738 * 4 3 2 6 6 C 1.47104 * 120.00356 * 185.18723 * 4 3 2 7 7 O 1.21611 * 119.99826 * 255.45873 * 6 4 3 8 8 N 1.34777 * 119.99701 * 75.73467 * 6 4 3 9 9 C 1.46927 * 120.63153 * 4.77096 * 8 6 4 10 10 C 1.53185 * 108.77523 * 233.58569 * 9 8 6 11 11 C 1.53044 * 109.31443 * 305.36804 * 10 9 8 12 12 C 1.53041 * 109.53729 * 61.36657 * 11 10 9 13 13 H 1.09003 * 109.49867 * 58.61947 * 12 11 10 14 14 N 1.46494 * 109.49556 * 178.68343 * 12 11 10 15 15 C 1.35311 * 125.87098 * 84.99862 * 14 12 11 16 16 C 1.35353 * 106.17885 * 179.97438 * 15 14 12 17 17 C 1.50699 * 126.75196 * 180.02562 * 16 15 14 18 18 N 1.46499 * 109.46952 * 94.99853 * 17 16 15 19 19 C 1.36946 * 119.99645 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00081 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99736 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00170 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99796 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47102 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46722 * 120.00348 * 23 21 19 26 26 H 1.48493 * 109.47165 * 240.00253 * 23 21 19 27 27 N 1.33770 * 106.49448 * 0.02562 * 16 15 14 28 28 N 1.28639 * 108.88802 * 359.73542 * 27 16 15 29 29 C 1.46925 * 120.62763 * 184.49444 * 8 6 4 30 30 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46758 * 299.99504 * 1 2 3 32 32 H 1.08996 * 109.47514 * 59.99600 * 1 2 3 33 33 H 1.09005 * 109.46758 * 240.00496 * 2 1 3 34 34 H 1.08997 * 109.46991 * 120.00392 * 2 1 3 35 35 H 1.08006 * 120.00424 * 305.41390 * 3 2 1 36 36 H 1.09001 * 109.47085 * 174.96417 * 5 4 3 37 37 H 1.09000 * 109.47626 * 294.97292 * 5 4 3 38 38 H 1.09001 * 109.47203 * 54.96988 * 5 4 3 39 39 H 1.08996 * 109.58662 * 353.37813 * 9 8 6 40 40 H 1.09000 * 109.58178 * 113.80219 * 9 8 6 41 41 H 1.09005 * 109.50128 * 65.32090 * 10 9 8 42 42 H 1.08997 * 109.50098 * 185.41414 * 10 9 8 43 43 H 1.09003 * 109.45673 * 181.38368 * 11 10 9 44 44 H 1.09002 * 109.45903 * 301.35595 * 11 10 9 45 45 H 1.08002 * 126.91189 * 0.02562 * 15 14 12 46 46 H 1.08994 * 109.47082 * 214.99997 * 17 16 15 47 47 H 1.09007 * 109.47198 * 334.99753 * 17 16 15 48 48 H 0.96995 * 120.00338 * 359.97438 * 18 17 16 49 49 H 0.96992 * 120.00081 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.58835 * 246.19756 * 29 8 6 51 51 H 1.09003 * 109.58561 * 6.63066 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8832 1.8253 0.9387 5 6 3.4358 0.8356 1.9318 6 6 3.2850 3.2388 1.0076 7 8 4.3863 3.5775 0.6186 8 7 2.4346 4.1574 1.5070 9 6 1.1454 3.7498 2.0820 10 6 0.0276 4.5426 1.3975 11 6 0.3233 6.0395 1.5155 12 6 1.6432 6.3577 0.8093 13 1 1.5760 6.0624 -0.2378 14 7 1.9097 7.7956 0.8957 15 6 2.5116 8.4298 1.9283 16 6 2.5535 9.7405 1.5931 17 6 3.1303 10.8637 2.4158 18 7 4.5123 11.1142 1.9992 19 6 5.2440 12.0975 2.6101 20 1 4.8024 12.6879 3.3992 21 6 6.5536 12.3346 2.2157 22 7 7.0920 11.6147 1.2543 23 14 7.5515 13.6763 3.0485 24 1 6.7226 14.3359 4.0893 25 1 8.7549 13.0782 3.6803 26 1 7.9702 14.6810 2.0384 27 7 1.9822 9.8428 0.3879 28 7 1.6161 8.6722 -0.0001 29 6 2.7818 5.5850 1.4923 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.7014 2.1107 -0.7623 36 1 4.1777 1.3277 2.5607 37 1 2.6262 0.4552 2.5546 38 1 3.9032 0.0080 1.3983 39 1 0.9919 2.6836 1.9157 40 1 1.1398 3.9594 3.1516 41 1 -0.0242 4.2638 0.3450 42 1 -0.9241 4.3206 1.8803 43 1 -0.4832 6.6067 1.0506 44 1 0.3996 6.3127 2.5680 45 1 2.8844 7.9805 2.8369 46 1 2.5366 11.7654 2.2665 47 1 3.1130 10.5878 3.4702 48 1 4.9091 10.5837 1.2907 49 1 8.0070 11.7806 0.9785 50 1 2.9069 5.9412 2.5148 51 1 3.7083 5.7300 0.9366 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185884792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:39 Heat of formation + Delta-G solvation = 63.677066 kcal Electronic energy + Delta-G solvation = -30513.869931 eV Core-core repulsion = 26450.077147 eV Total energy + Delta-G solvation = -4063.792784 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -44.35947 -41.54281 -38.97924 -37.26150 -36.86101 -35.60068 -33.79710 -33.43687 -32.64453 -31.66519 -31.11018 -28.12006 -27.74691 -26.97832 -25.60569 -24.84529 -24.41284 -23.09609 -22.38853 -21.86425 -20.91882 -19.49044 -19.24075 -18.38132 -17.89628 -17.47087 -17.15243 -16.63901 -16.44563 -16.07423 -15.83900 -15.55316 -15.50040 -15.19562 -14.98876 -14.90615 -14.74952 -14.39536 -14.10200 -13.99518 -13.96457 -13.71663 -13.35209 -13.09333 -12.98787 -12.82906 -12.78483 -12.73185 -12.58568 -12.42716 -12.27026 -12.21942 -12.04975 -11.98378 -11.88259 -11.83659 -11.67875 -11.12216 -10.99987 -10.96487 -10.26752 -9.97230 -9.85438 -9.03728 -7.94290 -5.25346 0.53261 0.67839 1.16294 1.40832 1.41721 1.49434 1.50716 1.61074 1.94672 2.58525 3.02344 3.26057 3.36552 3.45340 3.50535 3.62578 3.84961 3.86291 3.96422 3.99096 4.13538 4.19216 4.20671 4.25466 4.29222 4.38307 4.42350 4.51506 4.52546 4.58986 4.70550 4.72059 4.77096 4.80345 4.84320 4.91957 4.93825 5.05328 5.10117 5.14195 5.15100 5.19644 5.22264 5.25745 5.39659 5.50221 5.57102 5.59664 5.61921 6.13926 6.24901 6.91107 7.31289 7.46037 8.02693 8.28379 9.29946 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.002147 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.052387 B =13040.934663 C =14168.369985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.177 4.177 5 C -0.101 4.101 6 C 0.552 3.448 7 O -0.589 6.589 8 N -0.597 5.597 9 C 0.097 3.903 10 C -0.120 4.120 11 C -0.123 4.123 12 C 0.134 3.866 13 H 0.107 0.893 14 N -0.278 5.278 15 C -0.022 4.022 16 C -0.033 4.033 17 C 0.235 3.765 18 N -0.741 5.741 19 C -0.241 4.241 20 H 0.088 0.912 21 C -0.082 4.082 22 N -0.975 5.975 23 Si 0.981 3.019 24 H -0.258 1.258 25 H -0.293 1.293 26 H -0.297 1.297 27 N -0.296 5.296 28 N -0.111 5.111 29 C 0.107 3.893 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.047 0.953 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.223 0.777 46 H 0.032 0.968 47 H 0.065 0.935 48 H 0.369 0.631 49 H 0.250 0.750 50 H 0.102 0.898 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.548 -31.661 5.076 38.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.137 4.137 3 C -0.112 4.112 4 C -0.180 4.180 5 C -0.158 4.158 6 C 0.343 3.657 7 O -0.469 6.469 8 N -0.330 5.330 9 C -0.024 4.024 10 C -0.159 4.159 11 C -0.162 4.162 12 C 0.032 3.968 13 H 0.125 0.875 14 N -0.072 5.072 15 C -0.173 4.173 16 C -0.172 4.172 17 C 0.108 3.892 18 N -0.383 5.383 19 C -0.372 4.372 20 H 0.106 0.894 21 C -0.274 4.274 22 N -0.626 5.626 23 Si 0.810 3.190 24 H -0.182 1.182 25 H -0.220 1.220 26 H -0.225 1.225 27 N -0.163 5.163 28 N -0.089 5.089 29 C -0.018 4.018 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.132 0.868 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.139 0.861 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.239 0.761 46 H 0.050 0.950 47 H 0.083 0.917 48 H 0.200 0.800 49 H 0.058 0.942 50 H 0.120 0.880 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.642 -31.120 3.617 38.078 hybrid contribution 1.878 0.921 0.331 2.117 sum -19.765 -30.200 3.947 36.307 Atomic orbital electron populations 1.21701 0.93420 1.02693 1.02514 1.20806 0.97166 0.91781 1.03992 1.23476 0.93380 0.99230 0.95144 1.21275 1.02090 0.91592 1.03042 1.20716 1.01414 0.96665 0.96973 1.19358 0.83421 0.87558 0.75409 1.90850 1.23456 1.82436 1.50134 1.48093 1.20421 1.04578 1.59898 1.22251 0.79621 1.01714 0.98799 1.21916 0.99978 0.91201 1.02764 1.21998 0.93149 0.99183 1.01836 1.22314 0.98498 0.72057 1.03892 0.87469 1.47562 1.37966 1.09758 1.11906 1.23709 1.03497 0.92482 0.97634 1.22311 1.04202 0.96070 0.94583 1.18996 0.84238 0.91412 0.94578 1.42549 1.09745 1.41894 1.44130 1.19764 0.94093 1.09671 1.13709 0.89448 1.25708 0.98819 1.02672 1.00186 1.69880 1.14533 1.44570 1.33609 0.84953 0.78341 0.78139 0.77581 1.18237 1.21970 1.22463 1.75025 1.14342 1.14631 1.12264 1.78179 1.21731 0.93099 1.15941 1.21781 0.96300 0.81209 1.02508 0.91461 0.91568 0.92757 0.90286 0.89343 0.87210 0.93352 0.87900 0.90093 0.86808 0.88663 0.90796 0.86051 0.90442 0.89085 0.76067 0.95041 0.91714 0.80017 0.94153 0.88047 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.35 9.89 71.98 0.71 0.36 16 2 C -0.10 -0.46 6.16 29.85 0.18 -0.28 16 3 C -0.09 -0.88 8.41 24.52 0.21 -0.68 16 4 C -0.18 -2.38 4.11 -18.70 -0.08 -2.46 16 5 C -0.10 -0.96 8.56 71.23 0.61 -0.35 16 6 C 0.55 11.92 6.99 86.57 0.61 12.52 16 7 O -0.59 -19.76 16.54 -4.07 -0.07 -19.82 16 8 N -0.60 -9.40 2.97 -822.36 -2.44 -11.84 16 9 C 0.10 0.59 6.30 86.36 0.54 1.13 16 10 C -0.12 -0.57 6.08 30.67 0.19 -0.39 16 11 C -0.12 -1.37 5.49 30.62 0.17 -1.20 16 12 C 0.13 2.60 3.29 45.22 0.15 2.75 16 13 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 14 N -0.28 -7.97 3.26 -326.11 -1.06 -9.03 16 15 C -0.02 -0.65 10.61 83.49 0.89 0.24 16 16 C -0.03 -1.30 6.62 41.60 0.28 -1.02 16 17 C 0.24 10.12 6.82 85.63 0.58 10.70 16 18 N -0.74 -40.39 5.59 -347.17 -1.94 -42.34 16 19 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 20 H 0.09 4.70 7.83 -2.91 -0.02 4.67 16 21 C -0.08 -4.93 5.50 84.86 0.47 -4.46 16 22 N -0.97 -63.34 13.06 21.65 0.28 -63.06 16 23 Si 0.98 47.69 29.55 68.60 2.03 49.71 16 24 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 26 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 27 N -0.30 -12.75 12.41 -48.60 -0.60 -13.36 16 28 N -0.11 -4.13 13.17 37.02 0.49 -3.65 16 29 C 0.11 2.13 5.47 86.51 0.47 2.61 16 30 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.07 0.06 8.14 -2.38 -0.02 0.04 16 32 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.09 0.24 5.93 -2.39 -0.01 0.22 16 35 H 0.11 1.16 8.05 -2.91 -0.02 1.13 16 36 H 0.05 0.64 7.99 -2.39 -0.02 0.62 16 37 H 0.10 0.35 7.71 -2.39 -0.02 0.33 16 38 H 0.08 0.67 7.86 -2.39 -0.02 0.65 16 39 H 0.11 0.34 5.79 -2.39 -0.01 0.33 16 40 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 42 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.22 4.84 7.18 -2.91 -0.02 4.82 16 46 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 48 H 0.37 22.25 7.66 -92.71 -0.71 21.54 16 49 H 0.25 15.67 8.31 -92.71 -0.77 14.90 16 50 H 0.10 1.68 6.93 -2.39 -0.02 1.66 16 51 H 0.07 1.98 7.03 -2.39 -0.02 1.96 16 Total: -1.00 -86.82 414.12 3.72 -83.10 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.22 Total: 23.87 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 6.81 Total: 6.41 kcal Atomic # 7 Polarization: -137.99 SS G_CDS: -5.28 Total: -143.27 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.07 Total: -19.82 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.71 kcal Total: -86.82 3.72 -83.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185884792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.777 kcal (2) G-P(sol) polarization free energy of solvation -86.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds