Wall clock time and date at job start Wed Apr 1 2020 05:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47250 * 2 1 4 4 C 1.32992 * 120.00461 * 121.30551 * 3 2 1 5 5 C 1.50695 * 120.00277 * 185.45440 * 4 3 2 6 6 C 1.47100 * 119.99817 * 5.45297 * 4 3 2 7 7 O 1.21619 * 120.00328 * 261.94001 * 6 4 3 8 8 N 1.34779 * 119.99872 * 81.93775 * 6 4 3 9 9 C 1.46917 * 120.63128 * 5.35158 * 8 6 4 10 10 C 1.53626 * 108.54245 * 126.36928 * 9 8 6 11 11 C 1.53039 * 109.24100 * 54.86010 * 10 9 8 12 12 C 1.53043 * 109.53779 * 298.50855 * 11 10 9 13 13 H 1.09000 * 109.49632 * 301.41708 * 12 11 10 14 14 N 1.46494 * 109.52567 * 181.33448 * 12 11 10 15 15 C 1.35319 * 125.86677 * 274.85896 * 14 12 11 16 16 C 1.35347 * 106.17261 * 179.90578 * 15 14 12 17 17 C 1.50699 * 126.75049 * 180.13047 * 16 15 14 18 18 N 1.46495 * 109.47669 * 95.24561 * 17 16 15 19 19 C 1.36936 * 120.00625 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99718 * 359.97438 * 19 18 17 21 21 C 1.38809 * 120.00696 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99363 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00479 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47269 * 89.99744 * 23 21 19 25 25 H 1.48496 * 109.47214 * 209.99794 * 23 21 19 26 26 H 1.48497 * 109.47275 * 329.99809 * 23 21 19 27 27 N 1.33770 * 106.49735 * 0.35303 * 16 15 14 28 28 N 1.28630 * 108.88829 * 359.77771 * 27 16 15 29 29 C 1.46930 * 120.62887 * 185.63767 * 8 6 4 30 30 H 1.09006 * 109.47020 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47733 * 299.99805 * 1 2 3 32 32 H 1.09001 * 109.47098 * 60.00271 * 1 2 3 33 33 H 1.08999 * 109.47772 * 239.99694 * 2 1 3 34 34 H 1.09001 * 109.47098 * 119.99728 * 2 1 3 35 35 H 1.08005 * 119.99766 * 301.30486 * 3 2 1 36 36 H 1.09005 * 109.47374 * 84.96504 * 5 4 3 37 37 H 1.08995 * 109.47497 * 204.96681 * 5 4 3 38 38 H 1.09001 * 109.47187 * 324.97172 * 5 4 3 39 39 H 1.09002 * 109.59133 * 246.20077 * 9 8 6 40 40 H 1.08998 * 109.58841 * 6.63266 * 9 8 6 41 41 H 1.08995 * 109.63691 * 294.86667 * 10 9 8 42 42 H 1.08999 * 109.45997 * 174.73979 * 10 9 8 43 43 H 1.09004 * 109.46266 * 178.49079 * 11 10 9 44 44 H 1.08999 * 109.46219 * 58.52765 * 11 10 9 45 45 H 1.08002 * 126.91304 * 0.02562 * 15 14 12 46 46 H 1.09009 * 109.47371 * 215.24750 * 17 16 15 47 47 H 1.09001 * 109.47039 * 335.24155 * 17 16 15 48 48 H 0.97006 * 119.99654 * 359.97438 * 18 17 16 49 49 H 0.97003 * 119.99689 * 180.02562 * 22 21 19 50 50 H 1.09000 * 109.58542 * 353.36591 * 29 8 6 51 51 H 1.08997 * 109.58947 * 113.65131 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8182 1.8483 0.9840 5 6 3.2203 3.2991 1.0510 6 6 3.2949 0.9050 2.0071 7 8 2.7245 0.8307 3.0787 8 7 4.3637 0.1230 1.7570 9 6 5.1338 0.2824 0.5160 10 6 6.6132 0.4779 0.8808 11 6 7.0739 -0.6864 1.7607 12 6 6.2574 -0.7040 3.0550 13 1 6.3833 0.2442 3.5775 14 7 6.7200 -1.7992 3.9109 15 6 6.3083 -3.0865 3.8434 16 6 6.9878 -3.7506 4.8073 17 6 6.8841 -5.2178 5.1356 18 7 7.9427 -5.9506 4.4368 19 6 8.0477 -7.3080 4.5837 20 1 7.3502 -7.8383 5.2152 21 6 9.0511 -8.0024 3.9220 22 7 9.9014 -7.3560 3.1529 23 14 9.1947 -9.8539 4.1231 24 1 8.3817 -10.5296 3.0801 25 1 10.6165 -10.2584 3.9817 26 1 8.6999 -10.2457 5.4673 27 7 7.7658 -2.8476 5.4145 28 7 7.5838 -1.7012 4.8601 29 6 4.7772 -0.9092 2.7174 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.7541 2.0919 -0.7992 36 1 2.4445 3.8680 1.5634 37 1 4.1590 3.3911 1.5972 38 1 3.3482 3.6877 0.0406 39 1 5.0215 -0.6093 -0.1009 40 1 4.7721 1.1542 -0.0291 41 1 6.7358 1.4150 1.4238 42 1 7.2114 0.5043 -0.0301 43 1 8.1305 -0.5652 1.9996 44 1 6.9280 -1.6252 1.2265 45 1 5.5847 -3.5009 3.1570 46 1 6.9940 -5.3582 6.2110 47 1 5.9115 -5.5934 4.8177 48 1 8.5690 -5.4744 3.8693 49 1 10.6024 -7.8412 2.6902 50 1 4.1801 -0.8238 3.6253 51 1 4.6340 -1.8961 2.2774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185884796.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:54 Heat of formation + Delta-G solvation = 88.730039 kcal Electronic energy + Delta-G solvation = -30657.499904 eV Core-core repulsion = 26594.793498 eV Total energy + Delta-G solvation = -4062.706406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.01796 -40.89166 -38.21566 -36.30613 -35.16309 -34.31819 -32.75608 -32.71056 -31.87847 -30.19188 -29.88991 -27.56108 -26.43407 -25.81563 -24.62077 -23.31619 -22.79932 -22.50298 -21.85961 -20.69280 -20.41031 -18.74206 -17.54501 -17.17086 -16.78361 -16.42891 -16.07997 -15.91008 -15.18656 -14.93298 -14.80615 -14.68180 -14.47816 -14.09398 -13.96786 -13.71667 -13.67352 -13.44918 -13.26875 -13.18329 -13.10428 -12.83873 -12.60943 -12.49992 -12.32669 -11.83385 -11.66651 -11.56123 -11.53689 -11.45075 -11.40613 -11.20092 -10.88198 -10.78986 -10.49089 -10.30263 -10.07551 -9.86630 -9.69961 -9.42044 -9.23313 -8.86767 -8.80832 -6.89593 -5.72303 -3.01632 1.22046 1.83926 2.01920 2.21395 2.72711 2.94570 3.46673 3.51976 3.54171 3.85616 3.98294 4.16689 4.26550 4.29723 4.35561 4.53711 4.57260 4.64184 4.74996 4.83375 4.84052 4.86550 4.93372 4.98941 5.09944 5.12290 5.16310 5.18099 5.20464 5.31070 5.35325 5.37675 5.48308 5.50844 5.55418 5.59735 5.65709 5.69939 5.72131 5.81521 5.87949 5.91950 6.05961 6.19966 6.43492 6.68990 6.76771 6.80792 6.83079 7.63269 7.73066 8.45111 8.87369 9.56870 10.12807 10.48966 11.50544 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015032 B = 0.002163 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.290984 B =12944.466816 C =13550.033223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.108 4.108 4 C -0.166 4.166 5 C -0.105 4.105 6 C 0.564 3.436 7 O -0.530 6.530 8 N -0.605 5.605 9 C 0.104 3.896 10 C -0.129 4.129 11 C -0.133 4.133 12 C 0.139 3.861 13 H 0.113 0.887 14 N -0.294 5.294 15 C -0.046 4.046 16 C -0.002 4.002 17 C 0.232 3.768 18 N -0.726 5.726 19 C -0.238 4.238 20 H 0.073 0.927 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 N -0.253 5.253 28 N -0.093 5.093 29 C 0.104 3.896 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.186 0.814 46 H 0.039 0.961 47 H 0.038 0.962 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.106 0.894 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.863 23.942 -13.060 32.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.127 4.127 4 C -0.169 4.169 5 C -0.162 4.162 6 C 0.353 3.647 7 O -0.406 6.406 8 N -0.339 5.339 9 C -0.018 4.018 10 C -0.168 4.168 11 C -0.172 4.172 12 C 0.035 3.965 13 H 0.131 0.869 14 N -0.088 5.088 15 C -0.196 4.196 16 C -0.140 4.140 17 C 0.103 3.897 18 N -0.370 5.370 19 C -0.369 4.369 20 H 0.091 0.909 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.740 3.260 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.207 1.207 27 N -0.120 5.120 28 N -0.072 5.072 29 C -0.020 4.020 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.145 0.855 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.203 0.797 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.124 0.876 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.262 24.695 -11.623 31.771 hybrid contribution -0.237 -1.493 -0.883 1.751 sum -16.499 23.201 -12.506 31.095 Atomic orbital electron populations 1.21666 0.94197 1.02243 1.02166 1.20772 0.97001 0.93737 1.02841 1.23400 0.95298 0.97713 0.96292 1.21408 1.02721 0.96518 0.96256 1.20687 1.02115 0.90467 1.02897 1.18578 0.79323 0.79670 0.87129 1.90852 1.56627 1.68066 1.25081 1.47995 1.29491 1.35751 1.20699 1.21974 0.91025 1.03299 0.85545 1.21976 0.95444 0.98576 1.00768 1.21990 1.00800 1.00386 0.94020 1.21831 0.94470 0.89110 0.91079 0.86855 1.47226 1.28914 1.08158 1.24481 1.23312 1.06752 0.84359 1.05218 1.22455 0.96794 0.98636 0.96139 1.18951 0.93248 0.80850 0.96633 1.42302 1.33982 1.04747 1.56002 1.19237 1.11040 0.83239 1.23387 0.90887 1.24757 0.98098 0.98068 1.00092 1.69687 1.19481 1.34584 1.34372 0.86152 0.76834 0.85341 0.77640 1.21766 1.21813 1.20663 1.75098 1.19592 0.95254 1.22099 1.78281 1.08634 1.19686 1.00579 1.21835 0.92883 0.91862 0.95431 0.92110 0.92380 0.92390 0.90349 0.91513 0.85464 0.90572 0.91688 0.90759 0.90481 0.88802 0.90747 0.89173 0.89784 0.90074 0.79674 0.94295 0.94475 0.78124 0.93560 0.87572 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.15 0.37 -0.47 16 2 C -0.11 -0.65 6.21 -27.89 -0.17 -0.82 16 3 C -0.11 -0.58 9.15 -36.13 -0.33 -0.91 16 4 C -0.17 -1.12 3.74 -102.85 -0.38 -1.51 16 5 C -0.10 -0.51 10.02 36.00 0.36 -0.15 16 6 C 0.56 5.45 5.08 -12.66 -0.06 5.39 16 7 O -0.53 -7.43 16.52 5.26 0.09 -7.35 16 8 N -0.61 -4.71 2.97 -173.89 -0.52 -5.23 16 9 C 0.10 0.52 6.34 -3.49 -0.02 0.50 16 10 C -0.13 -0.67 6.10 -26.39 -0.16 -0.83 16 11 C -0.13 -1.10 5.49 -26.69 -0.15 -1.25 16 12 C 0.14 1.41 3.28 -67.81 -0.22 1.19 16 13 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 14 N -0.29 -4.26 3.26 -54.64 -0.18 -4.44 16 15 C -0.05 -0.71 10.61 -17.04 -0.18 -0.89 16 16 C 0.00 -0.05 6.62 -82.78 -0.55 -0.59 16 17 C 0.23 4.99 6.82 -5.20 -0.04 4.95 16 18 N -0.73 -19.19 5.59 -61.09 -0.34 -19.53 16 19 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 20 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16 23 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 N -0.25 -5.32 12.41 33.29 0.41 -4.90 16 28 N -0.09 -1.71 13.16 60.35 0.79 -0.92 16 29 C 0.10 0.95 5.47 -3.71 -0.02 0.93 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.55 6.31 -51.93 -0.33 0.22 16 35 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 38 H 0.07 0.20 8.10 -51.93 -0.42 -0.22 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.34 6.33 -51.93 -0.33 0.01 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.19 2.23 7.17 -52.49 -0.38 1.86 16 46 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.39 10.96 7.66 -40.82 -0.31 10.65 16 49 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.11 1.20 7.00 -51.93 -0.36 0.83 16 51 H 0.09 0.70 6.92 -51.93 -0.36 0.34 16 LS Contribution 415.75 15.07 6.27 6.27 Total: -1.00 -36.59 415.75 -7.95 -44.54 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -8.37 Total: 3.94 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -1.81 Total: -1.91 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: 0.90 Total: -63.12 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.09 Total: -7.35 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -36.59 -7.95 -44.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185884796.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.271 kcal (2) G-P(sol) polarization free energy of solvation -36.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds