Wall clock time and date at job start Wed Apr 1 2020 05:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50694 * 120.00524 * 2 1 4 4 C 1.53005 * 109.46856 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.47411 * 240.00181 * 3 2 1 6 6 C 1.50705 * 109.47540 * 119.99414 * 3 2 1 7 7 O 1.21277 * 119.99454 * 7.05173 * 6 3 2 8 8 N 1.34769 * 120.00167 * 187.05131 * 6 3 2 9 9 C 1.46925 * 120.62979 * 174.82544 * 8 6 3 10 10 C 1.53195 * 108.89104 * 126.46699 * 9 8 6 11 11 C 1.53041 * 109.31466 * 54.56559 * 10 9 8 12 12 C 1.53034 * 109.53635 * 298.63343 * 11 10 9 13 13 H 1.09007 * 109.49876 * 301.38161 * 12 11 10 14 14 N 1.46497 * 109.49938 * 181.31574 * 12 11 10 15 15 C 1.35309 * 125.86705 * 324.71800 * 14 12 11 16 16 C 1.35357 * 106.17805 * 179.90399 * 15 14 12 17 17 C 1.50700 * 126.75417 * 180.12849 * 16 15 14 18 18 N 1.46493 * 109.47374 * 95.24451 * 17 16 15 19 19 C 1.36932 * 120.00085 * 180.02562 * 18 17 16 20 20 H 1.08007 * 120.00129 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00220 * 179.97438 * 19 18 17 22 22 N 1.31612 * 120.00187 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00131 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47046 * 60.00219 * 23 21 19 25 25 H 1.48498 * 109.47121 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46928 * 299.99867 * 23 21 19 27 27 N 1.33771 * 106.49403 * 0.34831 * 16 15 14 28 28 N 1.28636 * 108.88700 * 359.77589 * 27 16 15 29 29 C 1.46967 * 120.65642 * 354.64735 * 8 6 3 30 30 H 1.08000 * 120.00215 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99707 * 0.02562 * 1 2 3 32 32 H 1.08004 * 119.99707 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47234 * 173.18907 * 4 3 2 34 34 H 1.09004 * 109.47296 * 293.18886 * 4 3 2 35 35 H 1.08999 * 109.47093 * 53.18870 * 4 3 2 36 36 H 1.08997 * 109.46606 * 317.78082 * 5 3 2 37 37 H 1.08998 * 109.46927 * 77.78093 * 5 3 2 38 38 H 1.08998 * 109.47039 * 197.78635 * 5 3 2 39 39 H 1.08995 * 109.58877 * 6.61114 * 9 8 6 40 40 H 1.08998 * 109.58512 * 246.32286 * 9 8 6 41 41 H 1.09006 * 109.49589 * 174.51614 * 10 9 8 42 42 H 1.08993 * 109.50078 * 294.60998 * 10 9 8 43 43 H 1.09000 * 109.45856 * 58.65484 * 11 10 9 44 44 H 1.09002 * 109.46014 * 178.61371 * 11 10 9 45 45 H 1.07997 * 126.91264 * 0.02562 * 15 14 12 46 46 H 1.09004 * 109.46789 * 215.24058 * 17 16 15 47 47 H 1.08998 * 109.47182 * 335.23625 * 17 16 15 48 48 H 0.97003 * 120.00095 * 359.97438 * 18 17 16 49 49 H 0.97001 * 120.00667 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.46624 * 113.74399 * 29 8 6 51 51 H 1.09002 * 109.59232 * 353.38824 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9432 1.3860 -1.2493 6 6 2.9299 1.3849 1.2305 7 8 3.0342 0.4233 1.9621 8 7 3.5888 2.5249 1.5179 9 6 4.3457 2.6566 2.7703 10 6 5.7787 3.0866 2.4409 11 6 5.7428 4.3592 1.5915 12 6 5.0091 4.0775 0.2784 13 1 5.5162 3.2745 -0.2567 14 7 5.0026 5.2875 -0.5474 15 6 4.9070 6.5579 -0.0916 16 6 4.9418 7.3546 -1.1853 17 6 4.8698 8.8598 -1.2072 18 7 6.2256 9.4130 -1.2479 19 6 6.4112 10.7694 -1.2730 20 1 5.5579 11.4315 -1.2632 21 6 7.6959 11.2937 -1.3111 22 7 8.7358 10.4870 -1.3225 23 14 7.9490 13.1442 -1.3460 24 1 7.3508 13.7487 -0.1286 25 1 9.4028 13.4443 -1.3851 26 1 7.2946 13.7105 -2.5528 27 7 5.0477 6.5429 -2.2433 28 7 5.0813 5.3246 -1.8317 29 6 3.5674 3.6588 0.5832 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8499 -0.9354 0.0004 33 1 1.6088 3.4072 0.1212 34 1 0.5260 2.4810 -0.9455 35 1 0.3649 2.3442 0.8219 36 1 3.4210 0.4214 -1.4203 37 1 2.3276 1.6446 -2.1108 38 1 3.7076 2.1498 -1.1064 39 1 4.3620 1.6987 3.2900 40 1 3.8753 3.4083 3.4042 41 1 6.3217 3.2817 3.3657 42 1 6.2782 2.2927 1.8858 43 1 5.2214 5.1455 2.1374 44 1 6.7617 4.6811 1.3764 45 1 4.8222 6.8730 0.9379 46 1 4.3184 9.1843 -2.0896 47 1 4.3603 9.2122 -0.3104 48 1 6.9920 8.8184 -1.2563 49 1 9.6336 10.8533 -1.3494 50 1 3.0326 4.4933 1.0367 51 1 3.0701 3.3619 -0.3402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185982788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:08 Heat of formation + Delta-G solvation = 119.771749 kcal Electronic energy + Delta-G solvation = -31271.941374 eV Core-core repulsion = 27210.581038 eV Total energy + Delta-G solvation = -4061.360336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.11589 -41.31239 -38.36835 -36.92773 -35.16998 -34.34142 -33.27074 -31.91422 -31.10254 -30.13466 -29.88690 -27.95076 -26.61547 -25.89259 -24.53542 -23.97181 -22.92095 -22.42398 -21.10515 -20.72528 -19.97912 -18.88517 -17.64384 -17.19167 -17.10247 -16.73673 -16.09368 -15.65549 -15.51880 -15.10720 -14.91414 -14.67758 -14.62248 -14.47135 -14.12662 -13.66940 -13.65369 -13.27578 -13.13949 -12.88839 -12.78300 -12.69155 -12.56910 -12.43627 -12.11702 -11.87286 -11.72163 -11.58469 -11.45887 -11.32595 -11.22850 -11.01339 -10.91226 -10.80183 -10.47387 -10.25438 -10.12980 -9.95011 -9.75443 -9.71974 -9.20888 -8.90112 -8.85773 -6.93015 -5.74759 -3.04543 1.72474 1.81493 2.03630 2.23888 2.67330 2.86959 3.45493 3.49951 3.51085 3.83304 3.92659 4.00017 4.16115 4.30776 4.38031 4.45050 4.50447 4.54507 4.61599 4.68094 4.73650 4.86971 4.96038 4.98209 5.06961 5.14255 5.19597 5.20963 5.25545 5.27631 5.34235 5.39056 5.46244 5.50127 5.54042 5.61459 5.65905 5.68993 5.71129 5.81869 5.91560 6.16096 6.22323 6.34800 6.37110 6.62613 6.70519 6.75688 6.81107 7.66986 7.69653 8.42380 8.79310 9.54147 10.09734 10.45534 11.47845 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021088 B = 0.002185 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.473598 B =12814.423278 C =13521.666061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 C -0.056 4.056 4 C -0.166 4.166 5 C -0.151 4.151 6 C 0.535 3.465 7 O -0.529 6.529 8 N -0.608 5.608 9 C 0.105 3.895 10 C -0.128 4.128 11 C -0.133 4.133 12 C 0.135 3.865 13 H 0.115 0.885 14 N -0.296 5.296 15 C -0.042 4.042 16 C -0.003 4.003 17 C 0.232 3.768 18 N -0.726 5.726 19 C -0.240 4.240 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.285 1.285 27 N -0.251 5.251 28 N -0.095 5.095 29 C 0.080 3.920 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.187 0.813 46 H 0.039 0.961 47 H 0.037 0.963 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.083 0.917 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.784 -21.765 8.469 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.143 4.143 3 C -0.059 4.059 4 C -0.223 4.223 5 C -0.208 4.208 6 C 0.323 3.677 7 O -0.405 6.405 8 N -0.342 5.342 9 C -0.017 4.017 10 C -0.167 4.167 11 C -0.172 4.172 12 C 0.031 3.969 13 H 0.133 0.867 14 N -0.090 5.090 15 C -0.193 4.193 16 C -0.141 4.141 17 C 0.103 3.897 18 N -0.370 5.370 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.212 1.212 27 N -0.118 5.118 28 N -0.074 5.074 29 C -0.044 4.044 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.204 0.796 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.101 0.899 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.632 -22.963 7.573 28.262 hybrid contribution 0.544 1.409 1.034 1.830 sum -14.088 -21.555 8.607 27.151 Atomic orbital electron populations 1.24010 0.95865 1.02388 1.00591 1.22495 0.95603 0.96371 0.99834 1.19885 0.95694 0.96287 0.94046 1.22450 0.99125 0.97069 1.03613 1.22115 0.99607 1.03373 0.95695 1.20502 0.79194 0.81505 0.86469 1.90693 1.63407 1.35351 1.51016 1.47944 1.51498 1.14240 1.20535 1.21744 0.90925 1.03584 0.85462 1.21891 0.96847 0.96950 1.01018 1.21974 1.02199 0.99387 0.93614 1.21901 0.98057 0.85001 0.91954 0.86692 1.47238 1.48509 1.06807 1.06480 1.23319 1.10427 0.83429 1.02075 1.22475 1.04445 0.98814 0.88329 1.18949 0.90043 0.81436 0.99249 1.42291 1.00782 1.04482 1.89484 1.19177 0.92144 0.82763 1.43062 0.90942 1.24760 0.95473 0.97791 1.02883 1.69665 0.97590 1.33392 1.57393 0.86235 0.76689 0.85167 0.77873 1.21240 1.21750 1.21172 1.75110 1.15403 0.94918 1.26380 1.78287 1.20195 1.17171 0.91713 1.22691 0.95431 0.90300 0.96006 0.88102 0.87810 0.86670 0.90574 0.90612 0.91393 0.91263 0.90522 0.91145 0.88266 0.90829 0.89097 0.90760 0.89906 0.89516 0.79635 0.94329 0.94522 0.78110 0.93461 0.89860 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.33 13.71 29.02 0.40 -0.93 16 2 C -0.12 -1.01 7.93 -36.03 -0.29 -1.30 16 3 C -0.06 -0.43 0.72 -156.81 -0.11 -0.55 16 4 C -0.17 -1.06 6.75 37.16 0.25 -0.81 16 5 C -0.15 -1.07 8.08 37.16 0.30 -0.77 16 6 C 0.54 5.12 6.46 -10.99 -0.07 5.05 16 7 O -0.53 -6.79 15.47 5.56 0.09 -6.70 16 8 N -0.61 -4.66 2.97 -172.74 -0.51 -5.17 16 9 C 0.10 0.69 6.44 -3.71 -0.02 0.67 16 10 C -0.13 -0.75 6.08 -26.61 -0.16 -0.91 16 11 C -0.13 -0.96 4.78 -26.69 -0.13 -1.09 16 12 C 0.13 1.16 3.11 -67.81 -0.21 0.95 16 13 H 0.12 1.00 7.88 -51.92 -0.41 0.59 16 14 N -0.30 -3.75 3.26 -54.65 -0.18 -3.93 16 15 C -0.04 -0.59 10.63 -17.05 -0.18 -0.77 16 16 C 0.00 -0.05 6.62 -82.77 -0.55 -0.60 16 17 C 0.23 4.73 6.82 -5.20 -0.04 4.70 16 18 N -0.73 -18.65 5.59 -61.09 -0.34 -18.99 16 19 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 20 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 23 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 N -0.25 -4.85 12.41 33.29 0.41 -4.44 16 28 N -0.10 -1.56 13.17 60.35 0.79 -0.77 16 29 C 0.08 0.58 3.36 -3.69 -0.01 0.56 16 30 H 0.10 0.60 8.06 -52.49 -0.42 0.17 16 31 H 0.10 0.62 5.68 -52.48 -0.30 0.33 16 32 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.08 0.47 4.31 -51.93 -0.22 0.25 16 34 H 0.07 0.42 7.75 -51.93 -0.40 0.02 16 35 H 0.07 0.44 7.05 -51.93 -0.37 0.07 16 36 H 0.07 0.49 8.01 -51.93 -0.42 0.07 16 37 H 0.08 0.49 7.92 -51.93 -0.41 0.08 16 38 H 0.07 0.52 4.95 -51.93 -0.26 0.26 16 39 H 0.10 0.77 7.00 -51.93 -0.36 0.41 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.53 7.25 -51.93 -0.38 0.16 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.19 1.99 7.35 -52.49 -0.39 1.60 16 46 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.39 10.71 7.66 -40.82 -0.31 10.40 16 49 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 50 H 0.08 0.55 7.95 -51.93 -0.41 0.14 16 51 H 0.12 0.88 2.97 -51.93 -0.15 0.72 16 LS Contribution 398.55 15.07 6.01 6.01 Total: -1.00 -34.94 398.55 -6.82 -41.76 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.72 Total: 5.80 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.07 Total: -3.11 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.90 Total: -61.04 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: 0.09 Total: -6.70 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.94 -6.82 -41.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185982788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.527 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds