Wall clock time and date at job start Wed Apr 1 2020 05:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50694 * 120.00524 * 2 1 4 4 C 1.53005 * 109.46856 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.47411 * 240.00181 * 3 2 1 6 6 C 1.50705 * 109.47540 * 119.99414 * 3 2 1 7 7 O 1.21277 * 119.99454 * 7.05173 * 6 3 2 8 8 N 1.34769 * 120.00167 * 187.05131 * 6 3 2 9 9 C 1.46925 * 120.62979 * 174.82544 * 8 6 3 10 10 C 1.53195 * 108.89104 * 126.46699 * 9 8 6 11 11 C 1.53041 * 109.31466 * 54.56559 * 10 9 8 12 12 C 1.53034 * 109.53635 * 298.63343 * 11 10 9 13 13 H 1.09007 * 109.49876 * 301.38161 * 12 11 10 14 14 N 1.46497 * 109.49938 * 181.31574 * 12 11 10 15 15 C 1.35309 * 125.86705 * 324.71800 * 14 12 11 16 16 C 1.35357 * 106.17805 * 179.90399 * 15 14 12 17 17 C 1.50700 * 126.75417 * 180.12849 * 16 15 14 18 18 N 1.46493 * 109.47374 * 95.24451 * 17 16 15 19 19 C 1.36932 * 120.00085 * 180.02562 * 18 17 16 20 20 H 1.08007 * 120.00129 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00220 * 179.97438 * 19 18 17 22 22 N 1.31612 * 120.00187 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00131 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47046 * 60.00219 * 23 21 19 25 25 H 1.48498 * 109.47121 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46928 * 299.99867 * 23 21 19 27 27 N 1.33771 * 106.49403 * 0.34831 * 16 15 14 28 28 N 1.28636 * 108.88700 * 359.77589 * 27 16 15 29 29 C 1.46967 * 120.65642 * 354.64735 * 8 6 3 30 30 H 1.08000 * 120.00215 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99707 * 0.02562 * 1 2 3 32 32 H 1.08004 * 119.99707 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47234 * 173.18907 * 4 3 2 34 34 H 1.09004 * 109.47296 * 293.18886 * 4 3 2 35 35 H 1.08999 * 109.47093 * 53.18870 * 4 3 2 36 36 H 1.08997 * 109.46606 * 317.78082 * 5 3 2 37 37 H 1.08998 * 109.46927 * 77.78093 * 5 3 2 38 38 H 1.08998 * 109.47039 * 197.78635 * 5 3 2 39 39 H 1.08995 * 109.58877 * 6.61114 * 9 8 6 40 40 H 1.08998 * 109.58512 * 246.32286 * 9 8 6 41 41 H 1.09006 * 109.49589 * 174.51614 * 10 9 8 42 42 H 1.08993 * 109.50078 * 294.60998 * 10 9 8 43 43 H 1.09000 * 109.45856 * 58.65484 * 11 10 9 44 44 H 1.09002 * 109.46014 * 178.61371 * 11 10 9 45 45 H 1.07997 * 126.91264 * 0.02562 * 15 14 12 46 46 H 1.09004 * 109.46789 * 215.24058 * 17 16 15 47 47 H 1.08998 * 109.47182 * 335.23625 * 17 16 15 48 48 H 0.97003 * 120.00095 * 359.97438 * 18 17 16 49 49 H 0.97001 * 120.00667 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.46624 * 113.74399 * 29 8 6 51 51 H 1.09002 * 109.59232 * 353.38824 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9432 1.3860 -1.2493 6 6 2.9299 1.3849 1.2305 7 8 3.0342 0.4233 1.9621 8 7 3.5888 2.5249 1.5179 9 6 4.3457 2.6566 2.7703 10 6 5.7787 3.0866 2.4409 11 6 5.7428 4.3592 1.5915 12 6 5.0091 4.0775 0.2784 13 1 5.5162 3.2745 -0.2567 14 7 5.0026 5.2875 -0.5474 15 6 4.9070 6.5579 -0.0916 16 6 4.9418 7.3546 -1.1853 17 6 4.8698 8.8598 -1.2072 18 7 6.2256 9.4130 -1.2479 19 6 6.4112 10.7694 -1.2730 20 1 5.5579 11.4315 -1.2632 21 6 7.6959 11.2937 -1.3111 22 7 8.7358 10.4870 -1.3225 23 14 7.9490 13.1442 -1.3460 24 1 7.3508 13.7487 -0.1286 25 1 9.4028 13.4443 -1.3851 26 1 7.2946 13.7105 -2.5528 27 7 5.0477 6.5429 -2.2433 28 7 5.0813 5.3246 -1.8317 29 6 3.5674 3.6588 0.5832 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8499 -0.9354 0.0004 33 1 1.6088 3.4072 0.1212 34 1 0.5260 2.4810 -0.9455 35 1 0.3649 2.3442 0.8219 36 1 3.4210 0.4214 -1.4203 37 1 2.3276 1.6446 -2.1108 38 1 3.7076 2.1498 -1.1064 39 1 4.3620 1.6987 3.2900 40 1 3.8753 3.4083 3.4042 41 1 6.3217 3.2817 3.3657 42 1 6.2782 2.2927 1.8858 43 1 5.2214 5.1455 2.1374 44 1 6.7617 4.6811 1.3764 45 1 4.8222 6.8730 0.9379 46 1 4.3184 9.1843 -2.0896 47 1 4.3603 9.2122 -0.3104 48 1 6.9920 8.8184 -1.2563 49 1 9.6336 10.8533 -1.3494 50 1 3.0326 4.4933 1.0367 51 1 3.0701 3.3619 -0.3402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185982788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:07 Heat of formation + Delta-G solvation = 96.401030 kcal Electronic energy + Delta-G solvation = -31272.954804 eV Core-core repulsion = 27210.581038 eV Total energy + Delta-G solvation = -4062.373767 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.29444 -41.99990 -39.08661 -37.59911 -36.80300 -35.49144 -34.02416 -33.55669 -31.79600 -31.58848 -30.86925 -28.48005 -27.68522 -27.17738 -25.39150 -24.79429 -24.52058 -23.27686 -22.14756 -21.86746 -20.61849 -19.53270 -19.30946 -18.34416 -17.89992 -17.59084 -17.04146 -16.56459 -16.38229 -16.14976 -15.99964 -15.60978 -15.53468 -15.40406 -15.18021 -15.05550 -14.70782 -14.29313 -14.24530 -13.87450 -13.69943 -13.45395 -13.34493 -13.14089 -12.99686 -12.97819 -12.70912 -12.62524 -12.53246 -12.30170 -12.21218 -12.09615 -12.00896 -11.88986 -11.83438 -11.69321 -11.63735 -11.18903 -10.92007 -10.76722 -10.33665 -10.19778 -9.85185 -8.98880 -7.90831 -5.20794 0.61292 1.12223 1.26061 1.48091 1.49955 1.54048 1.55544 1.61527 1.97927 2.61707 3.11909 3.29426 3.32545 3.41048 3.50581 3.59679 3.69330 3.83642 3.91951 3.93800 3.96311 3.99653 4.12293 4.21940 4.26443 4.35317 4.39556 4.41286 4.53413 4.56174 4.63930 4.66887 4.71648 4.74615 4.82903 4.85292 4.90712 4.96215 5.00719 5.12761 5.14454 5.17455 5.18805 5.23657 5.34023 5.53620 5.65820 5.68069 5.77428 6.13480 6.28803 6.96812 7.35823 7.54758 8.08027 8.33183 9.32776 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021088 B = 0.002185 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.473598 B =12814.423278 C =13521.666061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C -0.053 4.053 4 C -0.164 4.164 5 C -0.149 4.149 6 C 0.531 3.469 7 O -0.568 6.568 8 N -0.602 5.602 9 C 0.102 3.898 10 C -0.118 4.118 11 C -0.130 4.130 12 C 0.130 3.870 13 H 0.113 0.887 14 N -0.278 5.278 15 C -0.015 4.015 16 C -0.035 4.035 17 C 0.235 3.765 18 N -0.739 5.739 19 C -0.242 4.242 20 H 0.085 0.915 21 C -0.079 4.079 22 N -0.973 5.973 23 Si 0.978 3.022 24 H -0.271 1.271 25 H -0.299 1.299 26 H -0.279 1.279 27 N -0.295 5.295 28 N -0.108 5.108 29 C 0.086 3.914 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.225 0.775 46 H 0.029 0.971 47 H 0.064 0.936 48 H 0.370 0.630 49 H 0.250 0.750 50 H 0.101 0.899 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.312 -21.145 9.982 28.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.164 4.164 3 C -0.057 4.057 4 C -0.220 4.220 5 C -0.206 4.206 6 C 0.321 3.679 7 O -0.446 6.446 8 N -0.334 5.334 9 C -0.020 4.020 10 C -0.157 4.157 11 C -0.168 4.168 12 C 0.027 3.973 13 H 0.131 0.869 14 N -0.072 5.072 15 C -0.166 4.166 16 C -0.173 4.173 17 C 0.107 3.893 18 N -0.382 5.382 19 C -0.373 4.373 20 H 0.103 0.897 21 C -0.271 4.271 22 N -0.623 5.623 23 Si 0.806 3.194 24 H -0.197 1.197 25 H -0.226 1.226 26 H -0.206 1.206 27 N -0.162 5.162 28 N -0.086 5.086 29 C -0.038 4.038 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.128 0.872 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.094 0.906 45 H 0.241 0.759 46 H 0.046 0.954 47 H 0.082 0.918 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.119 0.881 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.212 -22.352 9.080 29.067 hybrid contribution 0.943 1.077 0.606 1.555 sum -15.268 -21.275 9.686 27.921 Atomic orbital electron populations 1.24201 0.95488 1.03390 0.98842 1.22518 0.96164 0.96240 1.01493 1.19884 0.95762 0.96736 0.93274 1.22454 0.98866 0.96444 1.04257 1.22107 0.99589 1.03041 0.95846 1.20853 0.79201 0.81310 0.86563 1.90674 1.64871 1.36680 1.52400 1.47959 1.50923 1.13800 1.20756 1.21869 0.91392 1.03587 0.85120 1.21833 0.96461 0.95942 1.01464 1.22002 1.01477 1.00520 0.92826 1.22251 0.99472 0.83406 0.92124 0.86894 1.47496 1.46170 1.07745 1.05760 1.23693 1.07368 0.82972 1.02571 1.22255 1.07420 0.97993 0.89681 1.18979 0.87369 0.83246 0.99697 1.42507 1.02459 1.03778 1.89446 1.19653 0.92498 0.84113 1.41055 0.89743 1.25626 0.95382 1.02310 1.03733 1.69841 0.97703 1.35241 1.59559 0.85151 0.75987 0.79873 0.78366 1.19715 1.22582 1.20567 1.75049 1.17068 0.96046 1.27992 1.78200 1.20936 1.16105 0.93410 1.22686 0.94332 0.90563 0.96241 0.87262 0.86650 0.87886 0.90167 0.89585 0.91260 0.91718 0.89654 0.91438 0.89541 0.88859 0.87196 0.91582 0.88154 0.90617 0.75900 0.95354 0.91838 0.79849 0.94153 0.88123 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 13.71 67.78 0.93 -1.37 16 2 C -0.15 -2.30 7.93 25.65 0.20 -2.10 16 3 C -0.05 -0.78 0.72 -53.67 -0.04 -0.81 16 4 C -0.16 -1.77 6.75 71.98 0.49 -1.28 16 5 C -0.15 -2.00 8.08 71.98 0.58 -1.42 16 6 C 0.53 9.73 6.46 87.66 0.57 10.30 16 7 O -0.57 -14.59 15.47 -3.02 -0.05 -14.64 16 8 N -0.60 -8.12 2.97 -818.82 -2.43 -10.55 16 9 C 0.10 1.13 6.44 86.36 0.56 1.68 16 10 C -0.12 -1.10 6.08 30.67 0.19 -0.91 16 11 C -0.13 -1.50 4.78 30.62 0.15 -1.35 16 12 C 0.13 1.96 3.11 45.07 0.14 2.10 16 13 H 0.11 1.82 7.88 -2.38 -0.02 1.80 16 14 N -0.28 -6.50 3.26 -326.81 -1.06 -7.56 16 15 C -0.01 -0.36 10.63 83.49 0.89 0.52 16 16 C -0.04 -1.23 6.62 41.60 0.28 -0.96 16 17 C 0.23 9.35 6.82 85.63 0.58 9.93 16 18 N -0.74 -37.91 5.59 -347.19 -1.94 -39.85 16 19 C -0.24 -13.34 9.99 84.03 0.84 -12.50 16 20 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 21 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 22 N -0.97 -60.23 13.06 21.65 0.28 -59.94 16 23 Si 0.98 45.77 29.55 68.60 2.03 47.80 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 27 N -0.29 -11.40 12.41 -48.60 -0.60 -12.00 16 28 N -0.11 -3.47 13.17 37.02 0.49 -2.98 16 29 C 0.09 1.02 3.36 86.35 0.29 1.31 16 30 H 0.11 1.15 8.06 -2.91 -0.02 1.13 16 31 H 0.12 1.16 5.68 -2.91 -0.02 1.14 16 32 H 0.10 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.08 0.79 4.31 -2.39 -0.01 0.78 16 34 H 0.09 0.76 7.75 -2.39 -0.02 0.75 16 35 H 0.07 0.74 7.05 -2.39 -0.02 0.72 16 36 H 0.06 0.91 8.01 -2.39 -0.02 0.89 16 37 H 0.08 0.99 7.92 -2.39 -0.02 0.97 16 38 H 0.07 0.93 4.95 -2.39 -0.01 0.92 16 39 H 0.09 1.25 7.00 -2.39 -0.02 1.24 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.10 0.85 7.25 -2.39 -0.02 0.83 16 44 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.22 3.76 7.35 -2.91 -0.02 3.74 16 46 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 47 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.37 20.89 7.66 -92.71 -0.71 20.18 16 49 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 50 H 0.10 0.94 7.95 -2.39 -0.02 0.92 16 51 H 0.12 1.50 2.97 -2.39 -0.01 1.50 16 Total: -1.00 -77.07 398.55 4.05 -73.02 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.24 Total: 27.63 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 7.10 Total: -0.91 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -5.27 Total: -132.89 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.05 Total: -14.64 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -77.07 4.05 -73.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185982788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.417 kcal (2) G-P(sol) polarization free energy of solvation -77.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds