Wall clock time and date at job start Wed Apr 1 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99727 * 2 1 4 4 N 1.46504 * 109.46653 * 125.27307 * 3 2 1 5 5 C 1.36740 * 127.13668 * 275.32802 * 4 3 2 6 6 C 1.50696 * 126.34830 * 0.03601 * 5 4 3 7 7 C 1.53003 * 109.47254 * 270.25447 * 6 5 4 8 8 H 1.08992 * 109.47189 * 55.00112 * 7 6 5 9 9 O 1.42900 * 109.47041 * 294.99706 * 7 6 5 10 10 C 1.50699 * 109.47125 * 175.00172 * 7 6 5 11 11 H 1.08003 * 120.00359 * 359.97438 * 10 7 6 12 12 C 1.37874 * 120.00201 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00273 * 179.97438 * 12 10 7 14 14 Si 1.86802 * 119.99863 * 359.97438 * 12 10 7 15 15 H 1.48504 * 109.47074 * 90.00076 * 14 12 10 16 16 H 1.48500 * 109.47430 * 210.00468 * 14 12 10 17 17 H 1.48500 * 109.46901 * 330.00247 * 14 12 10 18 18 N 1.30292 * 107.30333 * 180.23125 * 5 4 3 19 19 N 1.28529 * 110.05606 * 359.76995 * 18 5 4 20 20 C 1.31221 * 109.86073 * 0.02562 * 19 18 5 21 21 N 1.38573 * 126.47264 * 179.97438 * 20 19 18 22 22 C 1.46958 * 111.00383 * 323.63005 * 21 20 19 23 23 C 1.53051 * 109.36770 * 183.19052 * 22 21 20 24 24 N 1.46957 * 109.36064 * 301.60409 * 23 22 21 25 25 C 1.46902 * 110.99575 * 183.18982 * 24 23 22 26 26 C 1.53000 * 117.49979 * 174.99702 * 25 24 23 27 27 C 1.53003 * 60.03159 * 107.47748 * 26 25 24 28 28 C 1.46952 * 110.88508 * 59.32281 * 24 23 22 29 29 C 1.46954 * 111.00214 * 87.43400 * 21 20 19 30 30 H 1.08003 * 120.00272 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.00237 * 359.97438 * 1 2 3 32 32 H 1.07999 * 119.99620 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47298 * 5.27347 * 3 2 1 34 34 H 1.08994 * 109.46969 * 245.26785 * 3 2 1 35 35 H 1.09000 * 109.46910 * 30.25105 * 6 5 4 36 36 H 1.08998 * 109.47417 * 150.25542 * 6 5 4 37 37 H 0.96700 * 114.00355 * 300.00231 * 9 7 6 38 38 H 0.97004 * 120.00063 * 180.02562 * 13 12 10 39 39 H 1.09000 * 109.48248 * 63.22169 * 22 21 20 40 40 H 1.08996 * 109.50615 * 303.17902 * 22 21 20 41 41 H 1.08994 * 109.48633 * 181.63762 * 23 22 21 42 42 H 1.08994 * 109.48374 * 61.56771 * 23 22 21 43 43 H 1.09002 * 115.55348 * 29.32886 * 25 24 23 44 44 H 1.09002 * 117.50101 * 214.97824 * 26 25 24 45 45 H 1.09003 * 117.50043 * 359.97438 * 26 25 24 46 46 H 1.08996 * 117.50087 * 107.50314 * 27 26 25 47 47 H 1.08999 * 117.49537 * 252.52224 * 27 26 25 48 48 H 1.09001 * 109.49018 * 60.64011 * 28 24 23 49 49 H 1.09001 * 109.48818 * 180.71198 * 28 24 23 50 50 H 1.08996 * 109.49132 * 296.77975 * 29 21 20 51 51 H 1.09006 * 109.48636 * 56.84200 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9984 1.3292 1.1277 5 6 2.7269 1.6933 2.4175 6 6 1.3954 2.1503 2.9551 7 6 1.2842 3.6701 2.8176 8 1 1.4543 3.9544 1.7793 9 8 2.2628 4.2965 3.6495 10 6 -0.0926 4.1134 3.2407 11 1 -0.8162 3.3841 3.5739 12 6 -0.4290 5.4499 3.2014 13 7 -1.6306 5.8367 3.5702 14 14 0.8222 6.7113 2.6244 15 1 0.7007 6.8929 1.1556 16 1 0.5699 8.0064 3.3059 17 1 2.1906 6.2373 2.9531 18 7 3.8339 1.5760 3.0944 19 7 4.7779 1.1611 2.3272 20 6 4.3201 0.9905 1.1093 21 7 5.0434 0.5538 0.0110 22 6 6.4157 1.0788 0.0414 23 6 7.1551 0.6403 -1.2249 24 7 7.1572 -0.8271 -1.3043 25 6 7.9240 -1.2901 -2.4687 26 6 8.1222 -2.7987 -2.6296 27 6 7.1640 -2.0503 -3.5585 28 6 5.7850 -1.3521 -1.3348 29 6 5.0457 -0.9136 -0.0685 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3589 2.1314 0.0945 34 1 2.6174 1.4048 -0.9334 35 1 0.5932 1.6748 2.3908 36 1 1.3136 1.8737 4.0062 37 1 2.1720 4.0876 4.5893 38 1 -1.8674 6.7770 3.5422 39 1 6.9341 0.6906 0.9181 40 1 6.3879 2.1674 0.0878 41 1 8.1819 1.0042 -1.1908 42 1 6.6521 1.0511 -2.1003 43 1 8.7394 -0.6390 -2.7838 44 1 9.0678 -3.1400 -3.0509 45 1 7.6840 -3.4476 -1.8713 46 1 7.4792 -1.8993 -4.5909 47 1 6.0954 -2.2067 -3.4110 48 1 5.2665 -0.9639 -2.2115 49 1 5.8131 -2.4408 -1.3809 50 1 5.5486 -1.3245 0.8069 51 1 4.0187 -1.2775 -0.1025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262955091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:17 Heat of formation + Delta-G solvation = 108.243513 kcal Electronic energy + Delta-G solvation = -31625.148115 eV Core-core repulsion = 27563.287877 eV Total energy + Delta-G solvation = -4061.860238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.69209 -40.03312 -37.50946 -36.49196 -35.99757 -33.80553 -32.66619 -32.30290 -31.39842 -31.19218 -28.53841 -27.03268 -26.26557 -25.40829 -24.10810 -22.84908 -22.05425 -21.50676 -21.06381 -20.42900 -19.88755 -19.53454 -17.77051 -17.29783 -16.75539 -16.27563 -16.04327 -15.65605 -15.13893 -14.94004 -14.85616 -14.68417 -14.39931 -14.15844 -14.11552 -14.01278 -13.61916 -13.39325 -12.87961 -12.79614 -12.56547 -12.27263 -12.00435 -11.74158 -11.64314 -11.63285 -11.49835 -11.43276 -11.36652 -11.15001 -11.10115 -10.98214 -10.67018 -10.55173 -10.27238 -10.15956 -9.89964 -9.65786 -9.22162 -9.08935 -8.70819 -8.56029 -8.49658 -8.12240 -6.19576 -4.32148 1.82638 2.03208 2.59355 3.19761 3.21619 3.34179 3.45515 3.60212 3.68282 3.73739 4.33276 4.47063 4.48832 4.51450 4.59935 4.64716 4.68648 4.76708 4.84130 4.90909 4.97905 5.05789 5.12923 5.15184 5.17976 5.25507 5.30470 5.37420 5.40943 5.44093 5.49793 5.56949 5.62403 5.63730 5.70241 5.72403 5.81293 5.92177 6.08279 6.16745 6.24843 6.37350 6.43130 6.48189 6.50135 6.62041 6.68870 6.83521 7.18229 7.36871 7.49009 8.21611 8.75484 9.01809 9.11674 9.44774 10.90405 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.002666 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.247743 B =10501.943667 C =11037.014429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.185 4.185 3 C 0.138 3.862 4 N -0.464 5.464 5 C 0.218 3.782 6 C -0.054 4.054 7 C 0.205 3.795 8 H 0.048 0.952 9 O -0.574 6.574 10 C -0.566 4.566 11 H 0.076 0.924 12 C 0.087 3.913 13 N -0.889 5.889 14 Si 0.866 3.134 15 H -0.288 1.288 16 H -0.294 1.294 17 H -0.216 1.216 18 N -0.286 5.286 19 N -0.312 5.312 20 C 0.324 3.676 21 N -0.459 5.459 22 C 0.072 3.928 23 C 0.060 3.940 24 N -0.508 5.508 25 C 0.023 3.977 26 C -0.171 4.171 27 C -0.219 4.219 28 C 0.057 3.943 29 C 0.065 3.935 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.361 0.639 38 H 0.266 0.734 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.119 0.881 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.051 0.949 49 H 0.084 0.916 50 H 0.058 0.942 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.993 -16.640 -15.341 26.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.204 4.204 3 C 0.015 3.985 4 N -0.157 5.157 5 C -0.049 4.049 6 C -0.095 4.095 7 C 0.146 3.854 8 H 0.066 0.934 9 O -0.380 6.380 10 C -0.603 4.603 11 H 0.094 0.906 12 C -0.118 4.118 13 N -0.526 5.526 14 Si 0.693 3.307 15 H -0.215 1.215 16 H -0.221 1.221 17 H -0.139 1.139 18 N -0.125 5.125 19 N -0.157 5.157 20 C -0.032 4.032 21 N -0.185 5.185 22 C -0.055 4.055 23 C -0.068 4.068 24 N -0.230 5.230 25 C -0.087 4.087 26 C -0.209 4.209 27 C -0.258 4.258 28 C -0.071 4.071 29 C -0.063 4.063 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.208 0.792 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.137 0.863 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.118 0.882 48 H 0.069 0.931 49 H 0.103 0.897 50 H 0.076 0.924 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 15.066 -16.209 -14.712 26.574 hybrid contribution -0.832 0.405 -1.131 1.461 sum 14.234 -15.804 -15.843 26.522 Atomic orbital electron populations 1.24074 0.95534 1.03024 0.96533 1.23001 0.96290 0.97636 1.03425 1.20949 0.91848 0.97441 0.88252 1.46276 1.08993 1.50029 1.10450 1.25291 0.99571 0.99881 0.80138 1.20982 0.86243 1.00400 1.01830 1.19654 0.88750 0.85124 0.91833 0.93406 1.86686 1.56921 1.73336 1.21053 1.21430 0.96967 0.94226 1.47654 0.90616 1.24946 0.94979 0.98809 0.93058 1.69942 1.19706 1.16851 1.46071 0.87093 0.85922 0.79769 0.77962 1.21531 1.22051 1.13853 1.74035 0.95942 1.17455 1.25070 1.74525 1.24209 1.18570 0.98351 1.22138 0.83799 1.05417 0.91841 1.58734 1.14906 1.10259 1.34565 1.22141 0.85016 1.00347 0.98045 1.22227 1.00651 0.86701 0.97195 1.62019 1.13145 1.09694 1.38159 1.22633 0.99805 0.94930 0.91287 1.23060 1.01089 0.94570 1.02140 1.23571 0.98967 1.06700 0.96592 1.22280 0.87961 1.00028 0.96847 1.22277 1.00659 0.85073 0.98263 0.87759 0.87270 0.87311 0.87836 0.87701 0.89879 0.88666 0.79232 0.92468 0.91466 0.89569 0.89383 0.93491 0.86308 0.88455 0.88550 0.88795 0.88226 0.93111 0.89733 0.92411 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 14.32 29.01 0.42 -1.13 16 2 C -0.18 -2.00 9.85 -36.03 -0.35 -2.35 16 3 C 0.14 1.74 6.29 -5.19 -0.03 1.71 16 4 N -0.46 -7.45 2.79 -115.37 -0.32 -7.77 16 5 C 0.22 4.10 7.09 -154.02 -1.09 3.00 16 6 C -0.05 -1.03 5.14 -27.88 -0.14 -1.17 16 7 C 0.21 4.61 2.30 -27.88 -0.06 4.54 16 8 H 0.05 1.11 7.57 -51.93 -0.39 0.72 16 9 O -0.57 -13.32 9.90 -35.23 -0.35 -13.67 16 10 C -0.57 -14.81 9.34 -34.44 -0.32 -15.14 16 11 H 0.08 2.11 7.99 -52.48 -0.42 1.69 16 12 C 0.09 2.42 5.47 -17.82 -0.10 2.33 16 13 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 14 Si 0.87 21.51 26.99 -169.99 -4.59 16.92 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 17 H -0.22 -5.39 5.31 56.52 0.30 -5.09 16 18 N -0.29 -5.91 12.18 32.99 0.40 -5.51 16 19 N -0.31 -6.01 11.65 30.31 0.35 -5.66 16 20 C 0.32 5.23 6.74 -318.88 -2.15 3.08 16 21 N -0.46 -5.78 4.70 -174.35 -0.82 -6.60 16 22 C 0.07 0.84 5.28 -3.77 -0.02 0.82 16 23 C 0.06 0.54 5.56 -3.77 -0.02 0.52 16 24 N -0.51 -4.46 4.92 -226.44 -1.11 -5.58 16 25 C 0.02 0.16 6.12 -67.67 -0.41 -0.25 16 26 C -0.17 -1.09 9.99 -26.73 -0.27 -1.36 16 27 C -0.22 -1.38 9.50 -26.69 -0.25 -1.63 16 28 C 0.06 0.48 4.25 -3.77 -0.02 0.46 16 29 C 0.06 0.69 5.55 -3.77 -0.02 0.67 16 30 H 0.10 0.88 8.06 -52.48 -0.42 0.46 16 31 H 0.11 1.15 7.84 -52.49 -0.41 0.74 16 32 H 0.11 1.11 7.30 -52.49 -0.38 0.72 16 33 H 0.10 1.37 7.72 -51.93 -0.40 0.97 16 34 H 0.10 1.18 8.11 -51.93 -0.42 0.76 16 35 H 0.08 1.44 7.98 -51.93 -0.41 1.03 16 36 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 37 H 0.36 7.54 9.04 45.56 0.41 7.95 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.07 0.89 7.98 -51.93 -0.41 0.47 16 40 H 0.09 1.07 8.13 -51.93 -0.42 0.65 16 41 H 0.09 0.67 8.12 -51.93 -0.42 0.24 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.12 0.75 8.02 -51.93 -0.42 0.33 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.66 7.58 -51.93 -0.39 0.26 16 46 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.10 0.64 5.89 -51.93 -0.31 0.34 16 48 H 0.05 0.43 7.20 -51.93 -0.37 0.05 16 49 H 0.08 0.63 6.69 -51.93 -0.35 0.28 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.08 0.80 7.37 -51.93 -0.38 0.42 16 LS Contribution 407.00 15.07 6.13 6.13 Total: -1.00 -32.80 407.00 -12.07 -44.87 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.68 Total: 8.23 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -4.85 Total: -5.89 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.73 Total: -56.59 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.35 Total: -13.67 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.59 Total: 16.92 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.80 -12.07 -44.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262955091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.111 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds