Wall clock time and date at job start Wed Apr 1 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99727 * 2 1 4 4 N 1.46504 * 109.46653 * 125.27307 * 3 2 1 5 5 C 1.36740 * 127.13668 * 275.32802 * 4 3 2 6 6 C 1.50696 * 126.34830 * 0.03601 * 5 4 3 7 7 C 1.53003 * 109.47254 * 270.25447 * 6 5 4 8 8 H 1.08992 * 109.47189 * 55.00112 * 7 6 5 9 9 O 1.42900 * 109.47041 * 294.99706 * 7 6 5 10 10 C 1.50699 * 109.47125 * 175.00172 * 7 6 5 11 11 H 1.08003 * 120.00359 * 359.97438 * 10 7 6 12 12 C 1.37874 * 120.00201 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00273 * 179.97438 * 12 10 7 14 14 Si 1.86802 * 119.99863 * 359.97438 * 12 10 7 15 15 H 1.48504 * 109.47074 * 90.00076 * 14 12 10 16 16 H 1.48500 * 109.47430 * 210.00468 * 14 12 10 17 17 H 1.48500 * 109.46901 * 330.00247 * 14 12 10 18 18 N 1.30292 * 107.30333 * 180.23125 * 5 4 3 19 19 N 1.28529 * 110.05606 * 359.76995 * 18 5 4 20 20 C 1.31221 * 109.86073 * 0.02562 * 19 18 5 21 21 N 1.38573 * 126.47264 * 179.97438 * 20 19 18 22 22 C 1.46958 * 111.00383 * 323.63005 * 21 20 19 23 23 C 1.53051 * 109.36770 * 183.19052 * 22 21 20 24 24 N 1.46957 * 109.36064 * 301.60409 * 23 22 21 25 25 C 1.46902 * 110.99575 * 183.18982 * 24 23 22 26 26 C 1.53000 * 117.49979 * 174.99702 * 25 24 23 27 27 C 1.53003 * 60.03159 * 107.47748 * 26 25 24 28 28 C 1.46952 * 110.88508 * 59.32281 * 24 23 22 29 29 C 1.46954 * 111.00214 * 87.43400 * 21 20 19 30 30 H 1.08003 * 120.00272 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.00237 * 359.97438 * 1 2 3 32 32 H 1.07999 * 119.99620 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47298 * 5.27347 * 3 2 1 34 34 H 1.08994 * 109.46969 * 245.26785 * 3 2 1 35 35 H 1.09000 * 109.46910 * 30.25105 * 6 5 4 36 36 H 1.08998 * 109.47417 * 150.25542 * 6 5 4 37 37 H 0.96700 * 114.00355 * 300.00231 * 9 7 6 38 38 H 0.97004 * 120.00063 * 180.02562 * 13 12 10 39 39 H 1.09000 * 109.48248 * 63.22169 * 22 21 20 40 40 H 1.08996 * 109.50615 * 303.17902 * 22 21 20 41 41 H 1.08994 * 109.48633 * 181.63762 * 23 22 21 42 42 H 1.08994 * 109.48374 * 61.56771 * 23 22 21 43 43 H 1.09002 * 115.55348 * 29.32886 * 25 24 23 44 44 H 1.09002 * 117.50101 * 214.97824 * 26 25 24 45 45 H 1.09003 * 117.50043 * 359.97438 * 26 25 24 46 46 H 1.08996 * 117.50087 * 107.50314 * 27 26 25 47 47 H 1.08999 * 117.49537 * 252.52224 * 27 26 25 48 48 H 1.09001 * 109.49018 * 60.64011 * 28 24 23 49 49 H 1.09001 * 109.48818 * 180.71198 * 28 24 23 50 50 H 1.08996 * 109.49132 * 296.77975 * 29 21 20 51 51 H 1.09006 * 109.48636 * 56.84200 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9984 1.3292 1.1277 5 6 2.7269 1.6933 2.4175 6 6 1.3954 2.1503 2.9551 7 6 1.2842 3.6701 2.8176 8 1 1.4543 3.9544 1.7793 9 8 2.2628 4.2965 3.6495 10 6 -0.0926 4.1134 3.2407 11 1 -0.8162 3.3841 3.5739 12 6 -0.4290 5.4499 3.2014 13 7 -1.6306 5.8367 3.5702 14 14 0.8222 6.7113 2.6244 15 1 0.7007 6.8929 1.1556 16 1 0.5699 8.0064 3.3059 17 1 2.1906 6.2373 2.9531 18 7 3.8339 1.5760 3.0944 19 7 4.7779 1.1611 2.3272 20 6 4.3201 0.9905 1.1093 21 7 5.0434 0.5538 0.0110 22 6 6.4157 1.0788 0.0414 23 6 7.1551 0.6403 -1.2249 24 7 7.1572 -0.8271 -1.3043 25 6 7.9240 -1.2901 -2.4687 26 6 8.1222 -2.7987 -2.6296 27 6 7.1640 -2.0503 -3.5585 28 6 5.7850 -1.3521 -1.3348 29 6 5.0457 -0.9136 -0.0685 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3589 2.1314 0.0945 34 1 2.6174 1.4048 -0.9334 35 1 0.5932 1.6748 2.3908 36 1 1.3136 1.8737 4.0062 37 1 2.1720 4.0876 4.5893 38 1 -1.8674 6.7770 3.5422 39 1 6.9341 0.6906 0.9181 40 1 6.3879 2.1674 0.0878 41 1 8.1819 1.0042 -1.1908 42 1 6.6521 1.0511 -2.1003 43 1 8.7394 -0.6390 -2.7838 44 1 9.0678 -3.1400 -3.0509 45 1 7.6840 -3.4476 -1.8713 46 1 7.4792 -1.8993 -4.5909 47 1 6.0954 -2.2067 -3.4110 48 1 5.2665 -0.9639 -2.2115 49 1 5.8131 -2.4408 -1.3809 50 1 5.5486 -1.3245 0.8069 51 1 4.0187 -1.2775 -0.1025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262955091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:16 Heat of formation + Delta-G solvation = 87.048220 kcal Electronic energy + Delta-G solvation = -31626.067212 eV Core-core repulsion = 27563.287877 eV Total energy + Delta-G solvation = -4062.779335 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -44.03590 -40.78531 -38.46425 -38.08002 -37.15125 -34.62097 -34.41961 -33.78304 -32.71636 -32.13877 -30.06065 -28.21399 -27.37682 -26.93688 -24.92365 -23.46722 -23.21819 -22.86670 -22.02608 -21.68684 -20.92107 -20.37642 -19.42292 -18.57383 -17.72931 -17.48601 -17.01685 -16.83801 -16.38222 -16.30589 -16.13331 -15.76579 -15.65623 -15.52523 -15.11458 -14.89930 -14.84725 -14.72095 -14.47060 -13.70697 -13.54939 -13.30521 -13.29139 -13.10058 -12.87961 -12.73480 -12.58513 -12.55055 -12.41279 -12.34761 -12.19271 -12.08551 -12.05334 -11.74568 -11.53326 -11.19150 -11.17273 -11.08481 -10.82714 -10.57218 -10.50736 -10.16010 -9.58561 -9.14463 -8.35480 -6.49214 0.69302 0.88932 1.35292 1.43728 1.53458 1.73833 1.79008 2.42086 2.57736 2.63829 3.02858 3.08438 3.39181 3.60572 3.65589 3.77967 3.80464 3.90466 3.96461 4.00139 4.06640 4.08893 4.11994 4.17427 4.26802 4.30922 4.36390 4.40510 4.46432 4.53372 4.63423 4.68817 4.74791 4.78277 4.82256 4.85665 4.91825 4.96239 4.99129 5.07522 5.10555 5.27279 5.37580 5.40408 5.51942 5.53860 5.57734 5.65024 5.97048 6.04482 6.08859 6.18161 6.63033 7.17718 7.33698 7.72184 8.77724 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.002666 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.247743 B =10501.943667 C =11037.014429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.191 4.191 3 C 0.133 3.867 4 N -0.461 5.461 5 C 0.208 3.792 6 C -0.040 4.040 7 C 0.213 3.787 8 H 0.045 0.955 9 O -0.584 6.584 10 C -0.556 4.556 11 H 0.052 0.948 12 C 0.038 3.962 13 N -0.932 5.932 14 Si 0.926 3.074 15 H -0.284 1.284 16 H -0.298 1.298 17 H -0.218 1.218 18 N -0.317 5.317 19 N -0.348 5.348 20 C 0.341 3.659 21 N -0.452 5.452 22 C 0.073 3.927 23 C 0.071 3.929 24 N -0.520 5.520 25 C 0.012 3.988 26 C -0.170 4.170 27 C -0.212 4.212 28 C 0.066 3.934 29 C 0.067 3.933 30 H 0.124 0.876 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.370 0.630 38 H 0.267 0.733 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.052 0.948 43 H 0.129 0.871 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.099 0.901 48 H 0.057 0.943 49 H 0.098 0.902 50 H 0.039 0.961 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.162 -17.953 -17.729 29.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.210 4.210 3 C 0.012 3.988 4 N -0.153 5.153 5 C -0.061 4.061 6 C -0.080 4.080 7 C 0.154 3.846 8 H 0.062 0.938 9 O -0.391 6.391 10 C -0.593 4.593 11 H 0.071 0.929 12 C -0.162 4.162 13 N -0.571 5.571 14 Si 0.751 3.249 15 H -0.210 1.210 16 H -0.225 1.225 17 H -0.140 1.140 18 N -0.156 5.156 19 N -0.192 5.192 20 C -0.016 4.016 21 N -0.178 5.178 22 C -0.055 4.055 23 C -0.057 4.057 24 N -0.243 5.243 25 C -0.097 4.097 26 C -0.208 4.208 27 C -0.251 4.251 28 C -0.062 4.062 29 C -0.060 4.060 30 H 0.142 0.858 31 H 0.121 0.879 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.138 0.862 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.218 0.782 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.070 0.930 43 H 0.146 0.854 44 H 0.126 0.874 45 H 0.109 0.891 46 H 0.121 0.879 47 H 0.117 0.883 48 H 0.075 0.925 49 H 0.116 0.884 50 H 0.057 0.943 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 16.239 -17.544 -17.118 29.403 hybrid contribution -1.188 0.720 -0.417 1.451 sum 15.050 -16.824 -17.535 28.583 Atomic orbital electron populations 1.24231 0.95344 1.03718 0.95052 1.22922 0.96419 0.96950 1.04661 1.21204 0.91583 0.98431 0.87626 1.46432 1.09394 1.49133 1.10340 1.25044 0.98936 1.00844 0.81275 1.20687 0.87135 0.97860 1.02279 1.19469 0.86456 0.87404 0.91263 0.93753 1.86633 1.56735 1.73781 1.21930 1.21676 0.98178 0.93498 1.45964 0.92934 1.25647 0.96228 1.00778 0.93588 1.70043 1.21443 1.17266 1.48299 0.86171 0.83668 0.77477 0.77573 1.21001 1.22469 1.13993 1.73935 0.96776 1.18394 1.26504 1.74455 1.24580 1.20416 0.99708 1.22514 0.83916 1.03314 0.91862 1.59001 1.15035 1.11505 1.32249 1.22154 0.84598 0.99705 0.99005 1.22139 1.01019 0.87101 0.95480 1.62004 1.13394 1.09417 1.39514 1.22725 1.00209 0.95584 0.91155 1.23112 1.01696 0.93918 1.02044 1.23596 0.98878 1.05816 0.96837 1.22230 0.87724 1.00744 0.95514 1.22342 1.01400 0.83411 0.98836 0.85760 0.87924 0.86342 0.88498 0.86151 0.88430 0.88689 0.78159 0.92412 0.93355 0.90612 0.87891 0.93015 0.85365 0.87371 0.89100 0.87869 0.88276 0.92465 0.88391 0.94254 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 14.32 67.78 0.97 -1.64 16 2 C -0.19 -3.72 9.85 25.64 0.25 -3.47 16 3 C 0.13 3.14 6.29 85.63 0.54 3.68 16 4 N -0.46 -14.32 2.79 -518.92 -1.45 -15.77 16 5 C 0.21 7.69 7.09 137.64 0.98 8.67 16 6 C -0.04 -1.47 5.14 29.85 0.15 -1.32 16 7 C 0.21 9.44 2.30 29.85 0.07 9.51 16 8 H 0.04 2.02 7.57 -2.39 -0.02 2.00 16 9 O -0.58 -26.71 9.90 -148.98 -1.47 -28.18 16 10 C -0.56 -29.15 9.34 25.60 0.24 -28.91 16 11 H 0.05 2.96 7.99 -2.91 -0.02 2.94 16 12 C 0.04 2.13 5.47 84.65 0.46 2.59 16 13 N -0.93 -55.61 13.96 21.45 0.30 -55.31 16 14 Si 0.93 44.64 26.99 68.60 1.85 46.49 16 15 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 16 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 17 H -0.22 -10.46 5.31 99.48 0.53 -9.93 16 18 N -0.32 -13.16 12.18 -49.54 -0.60 -13.77 16 19 N -0.35 -13.46 11.65 -58.01 -0.68 -14.14 16 20 C 0.34 10.80 6.74 260.11 1.75 12.56 16 21 N -0.45 -10.86 4.70 -705.54 -3.31 -14.18 16 22 C 0.07 1.66 5.28 86.31 0.46 2.11 16 23 C 0.07 1.13 5.56 86.31 0.48 1.61 16 24 N -0.52 -8.08 4.92 -870.33 -4.28 -12.36 16 25 C 0.01 0.14 6.12 44.94 0.28 0.42 16 26 C -0.17 -1.75 9.99 30.60 0.31 -1.44 16 27 C -0.21 -2.06 9.50 30.62 0.29 -1.77 16 28 C 0.07 0.96 4.25 86.31 0.37 1.33 16 29 C 0.07 1.33 5.55 86.31 0.48 1.81 16 30 H 0.12 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.10 2.00 7.84 -2.91 -0.02 1.97 16 32 H 0.12 2.10 7.30 -2.91 -0.02 2.08 16 33 H 0.10 2.44 7.72 -2.39 -0.02 2.42 16 34 H 0.12 2.45 8.11 -2.39 -0.02 2.43 16 35 H 0.10 3.29 7.98 -2.39 -0.02 3.27 16 36 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 37 H 0.37 15.34 9.04 -74.06 -0.67 14.67 16 38 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.05 1.29 7.98 -2.39 -0.02 1.27 16 40 H 0.08 1.86 8.13 -2.39 -0.02 1.84 16 41 H 0.10 1.35 8.12 -2.39 -0.02 1.33 16 42 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.13 1.26 8.02 -2.39 -0.02 1.24 16 44 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.09 1.05 7.58 -2.39 -0.02 1.03 16 46 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.10 0.98 5.89 -2.39 -0.01 0.97 16 48 H 0.06 0.79 7.20 -2.39 -0.02 0.77 16 49 H 0.10 1.20 6.69 -2.39 -0.02 1.18 16 50 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.09 1.59 7.37 -2.38 -0.02 1.58 16 Total: -1.00 -70.36 407.00 -1.50 -71.86 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.08 Total: 29.61 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 8.07 Total: 5.73 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -10.02 Total: -125.52 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -1.47 Total: -28.18 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.85 Total: 46.49 kcal Total: -70.36 -1.50 -71.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262955091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.910 kcal (2) G-P(sol) polarization free energy of solvation -70.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds