Wall clock time and date at job start Wed Apr 1 2020 05:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47057 * 119.99697 * 2 1 3 5 5 H 1.09005 * 109.47033 * 60.00029 * 4 2 1 6 6 C 1.52997 * 109.47264 * 299.99952 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21483 * 120.00280 * 0.02562 * 8 7 6 10 10 C 1.48469 * 119.99983 * 180.02562 * 8 7 6 11 11 C 1.39508 * 120.50520 * 179.97438 * 10 8 7 12 12 C 1.38763 * 118.42351 * 179.97438 * 11 10 8 13 13 N 1.32136 * 119.25124 * 0.02562 * 12 11 10 14 14 C 1.32572 * 120.95443 * 0.02562 * 13 12 11 15 15 N 1.38427 * 119.13713 * 179.97438 * 14 13 12 16 16 C 1.48526 * 111.00178 * 242.59722 * 15 14 13 17 17 C 1.54939 * 103.22906 * 159.72096 * 16 15 14 18 18 C 1.54600 * 102.91981 * 322.58817 * 17 16 15 19 19 C 1.47903 * 111.00238 * 0.02562 * 15 14 13 20 20 N 1.32289 * 121.72139 * 359.73446 * 14 13 12 21 21 N 1.46498 * 109.46890 * 179.97438 * 4 2 1 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 4 2 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47364 * 179.72253 * 26 24 22 28 28 H 1.48508 * 109.46883 * 299.72375 * 26 24 22 29 29 H 1.48497 * 109.46870 * 59.72186 * 26 24 22 30 30 H 1.09004 * 109.47252 * 59.99968 * 1 2 3 31 31 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47639 * 300.00185 * 1 2 3 33 33 H 1.08994 * 109.47535 * 240.00023 * 2 1 3 34 34 H 1.08994 * 109.47076 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46954 * 300.00277 * 3 2 1 36 36 H 1.08997 * 109.46518 * 59.99948 * 3 2 1 37 37 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 38 38 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 39 39 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 40 40 H 1.08002 * 120.78632 * 0.02562 * 11 10 8 41 41 H 1.08006 * 120.37960 * 179.97438 * 12 11 10 42 42 H 1.08999 * 110.67390 * 278.15817 * 16 15 14 43 43 H 1.09003 * 110.66424 * 41.29153 * 16 15 14 44 44 H 1.09000 * 110.72723 * 204.23250 * 17 16 15 45 45 H 1.08998 * 110.87743 * 81.01729 * 17 16 15 46 46 H 1.08997 * 110.30832 * 263.03554 * 18 17 16 47 47 H 1.09002 * 110.30838 * 140.87304 * 18 17 16 48 48 H 1.09006 * 109.91315 * 333.50613 * 19 15 14 49 49 H 1.09001 * 109.92113 * 94.80096 * 19 15 14 50 50 H 0.97004 * 119.99747 * 95.00774 * 21 4 2 51 51 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2493 6 6 1.5300 0.0001 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8052 -0.1444 4.9152 9 8 1.0420 0.7940 5.0288 10 6 2.3976 -0.7699 6.1244 11 6 2.0855 -0.2883 7.3959 12 6 2.6633 -0.9056 8.4962 13 7 3.4856 -1.9227 8.3080 14 6 3.7640 -2.3577 7.0870 15 7 4.6310 -3.4258 6.9334 16 6 5.8453 -3.0215 6.1796 17 6 6.8765 -4.1150 6.5557 18 6 6.5634 -4.3878 8.0449 19 6 5.1127 -3.9104 8.2451 20 7 3.2312 -1.8006 6.0119 21 7 3.5049 -0.7217 1.2489 22 6 4.1891 -1.6935 0.5688 23 1 3.6488 -2.4594 0.0322 24 6 5.5772 -1.6943 0.5689 25 7 6.2358 -0.7578 1.2183 26 14 6.5106 -3.0195 -0.3595 27 1 7.9708 -2.7942 -0.2092 28 1 6.1561 -4.3525 0.1909 29 1 6.1470 -2.9654 -1.7983 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.8183 1.0503 2.4549 38 1 0.4436 -0.0769 2.5444 39 1 2.7231 -1.3670 3.6010 40 1 1.4096 0.5447 7.5210 41 1 2.4441 -0.5582 9.4951 42 1 5.6521 -3.0277 5.1068 43 1 6.1902 -2.0397 6.5038 44 1 7.8941 -3.7426 6.4375 45 1 6.7245 -5.0141 5.9586 46 1 7.2402 -3.8207 8.6838 47 1 6.6436 -5.4535 8.2593 48 1 5.0859 -3.0996 8.9731 49 1 4.4922 -4.7394 8.5854 50 1 3.9902 -0.0337 1.7306 51 1 5.7512 -0.0693 1.7001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271862114.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:47 Heat of formation + Delta-G solvation = 22.557740 kcal Electronic energy + Delta-G solvation = -31491.205666 eV Core-core repulsion = 27425.629814 eV Total energy + Delta-G solvation = -4065.575852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.59034 -40.90995 -39.59406 -38.91135 -35.62657 -35.40597 -34.82913 -34.13982 -32.04634 -30.93001 -30.07855 -29.17751 -28.00086 -26.66896 -25.41829 -25.04012 -24.21858 -22.81351 -22.14465 -21.45757 -20.43772 -19.37793 -19.27871 -18.98720 -17.76368 -17.41866 -17.05391 -16.74977 -16.66851 -16.26693 -16.16070 -15.71204 -15.49962 -15.37053 -15.14301 -14.97394 -14.88677 -14.36372 -14.18512 -14.02961 -13.60335 -13.50696 -13.32969 -12.95525 -12.78284 -12.72128 -12.50601 -12.48805 -12.25135 -12.17247 -12.08034 -12.03563 -11.91963 -11.72104 -11.67812 -11.47818 -11.44677 -11.24209 -11.12460 -10.86270 -10.44987 -10.19500 -9.59739 -9.07089 -8.31056 -5.25457 -0.68449 -0.16643 1.51129 1.59598 1.68311 1.81394 1.84109 2.08446 2.59489 2.72828 2.85429 3.30367 3.45348 3.50368 3.61803 3.68774 3.74996 3.78033 3.86411 4.00686 4.11105 4.12725 4.21222 4.23424 4.34192 4.40242 4.44347 4.49619 4.59535 4.67665 4.80133 4.80978 4.82988 4.88357 4.94569 5.00617 5.04275 5.07261 5.08892 5.12324 5.17514 5.20446 5.31448 5.46492 5.47779 5.50392 5.55694 5.68219 5.98219 6.29212 6.54855 6.79931 6.93476 7.12505 8.02399 8.14604 9.19156 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007944 B = 0.004182 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3523.807912 B = 6694.482805 C = 9718.812458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.176 3.824 5 H 0.048 0.952 6 C 0.115 3.885 7 N -0.692 5.692 8 C 0.564 3.436 9 O -0.553 6.553 10 C 0.133 3.867 11 C -0.194 4.194 12 C 0.185 3.815 13 N -0.538 5.538 14 C 0.472 3.528 15 N -0.459 5.459 16 C 0.054 3.946 17 C -0.119 4.119 18 C -0.121 4.121 19 C 0.039 3.961 20 N -0.525 5.525 21 N -0.735 5.735 22 C -0.320 4.320 23 H 0.064 0.936 24 C -0.096 4.096 25 N -0.971 5.971 26 Si 1.120 2.880 27 H -0.296 1.296 28 H -0.280 1.280 29 H -0.283 1.283 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.028 0.972 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.413 0.587 40 H 0.179 0.821 41 H 0.229 0.771 42 H 0.070 0.930 43 H 0.043 0.957 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.095 0.905 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.358 0.642 51 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.585 -2.902 15.283 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.191 4.191 4 C 0.067 3.933 5 H 0.066 0.934 6 C -0.008 4.008 7 N -0.341 5.341 8 C 0.348 3.652 9 O -0.432 6.432 10 C -0.015 4.015 11 C -0.218 4.218 12 C 0.016 3.984 13 N -0.258 5.258 14 C 0.115 3.885 15 N -0.180 5.180 16 C -0.072 4.072 17 C -0.158 4.158 18 C -0.159 4.159 19 C -0.088 4.088 20 N -0.246 5.246 21 N -0.377 5.377 22 C -0.451 4.451 23 H 0.082 0.918 24 C -0.288 4.288 25 N -0.619 5.619 26 Si 0.946 3.054 27 H -0.222 1.222 28 H -0.206 1.206 29 H -0.209 1.209 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.250 0.750 40 H 0.196 0.804 41 H 0.245 0.755 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.114 0.886 48 H 0.101 0.899 49 H 0.108 0.892 50 H 0.190 0.810 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.381 -4.215 14.350 15.894 hybrid contribution -1.242 1.794 0.385 2.216 sum -6.622 -2.421 14.734 16.334 Atomic orbital electron populations 1.21844 0.93462 1.02051 1.02466 1.21574 0.96223 0.96472 0.98381 1.21693 0.99948 0.95961 1.01479 1.20587 0.83554 0.96999 0.92115 0.93421 1.21893 0.98456 0.97224 0.83270 1.45985 1.47151 1.35742 1.05232 1.18061 0.81145 0.82841 0.83159 1.90730 1.37071 1.28701 1.86693 1.21521 0.93095 0.91857 0.95004 1.23068 1.03226 1.03674 0.91836 1.24012 0.86301 0.86857 1.01230 1.68344 1.18121 1.15483 1.23818 1.21321 0.93917 0.88990 0.84265 1.61295 1.13907 1.24078 1.18740 1.23175 0.87290 0.98251 0.98463 1.22536 0.98220 0.97879 0.97124 1.22462 0.94344 1.03479 0.95653 1.23075 0.96590 1.01226 0.87867 1.67893 1.11263 1.10646 1.34803 1.42489 1.01057 1.32467 1.61697 1.20235 0.91963 1.06157 1.26793 0.91821 1.26882 0.94810 1.04486 1.02650 1.70994 1.37380 1.16517 1.37049 0.82708 0.74596 0.73131 0.74935 1.22207 1.20609 1.20906 0.91627 0.92431 0.91895 0.93050 0.95258 0.92011 0.92458 0.91608 0.89215 0.74973 0.80408 0.75503 0.91182 0.93837 0.88996 0.90188 0.89540 0.88616 0.89869 0.89182 0.80954 0.94877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.84 71.98 0.64 -2.97 16 2 C -0.10 -3.54 2.91 -10.79 -0.03 -3.57 16 3 C -0.13 -4.46 8.69 71.99 0.63 -3.83 16 4 C 0.18 6.72 2.27 44.99 0.10 6.82 16 5 H 0.05 1.89 8.08 -2.38 -0.02 1.87 16 6 C 0.12 3.97 4.51 86.38 0.39 4.36 16 7 N -0.69 -25.44 5.38 -465.36 -2.50 -27.95 16 8 C 0.56 20.02 7.83 86.97 0.68 20.70 16 9 O -0.55 -20.61 16.42 -3.66 -0.06 -20.67 16 10 C 0.13 4.28 6.79 42.00 0.29 4.57 16 11 C -0.19 -4.56 9.71 22.70 0.22 -4.34 16 12 C 0.18 3.50 11.30 84.77 0.96 4.46 16 13 N -0.54 -13.42 8.12 -198.02 -1.61 -15.02 16 14 C 0.47 14.59 6.98 261.53 1.82 16.42 16 15 N -0.46 -13.36 5.35 -696.30 -3.73 -17.08 16 16 C 0.05 1.61 6.31 86.65 0.55 2.16 16 17 C -0.12 -2.59 7.06 31.80 0.22 -2.37 16 18 C -0.12 -2.03 6.93 31.48 0.22 -1.81 16 19 C 0.04 0.82 6.34 86.46 0.55 1.37 16 20 N -0.53 -18.28 9.48 -187.10 -1.77 -20.05 16 21 N -0.74 -35.09 3.79 -322.94 -1.23 -36.31 16 22 C -0.32 -17.24 9.93 84.03 0.83 -16.41 16 23 H 0.06 3.39 7.83 -2.91 -0.02 3.36 16 24 C -0.10 -5.45 5.50 84.86 0.47 -4.98 16 25 N -0.97 -59.48 13.70 21.65 0.30 -59.19 16 26 Si 1.12 51.55 29.92 68.60 2.05 53.60 16 27 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 28 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 29 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.50 6.54 -2.39 -0.02 1.48 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.03 1.16 7.60 -2.39 -0.02 1.15 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.76 6.32 -2.39 -0.02 1.75 16 37 H 0.07 2.35 6.17 -2.39 -0.01 2.34 16 38 H 0.09 2.76 6.71 -2.39 -0.02 2.74 16 39 H 0.41 16.84 7.52 -92.71 -0.70 16.14 16 40 H 0.18 3.45 7.73 -2.91 -0.02 3.42 16 41 H 0.23 1.81 8.06 -2.91 -0.02 1.78 16 42 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.04 1.33 7.99 -2.39 -0.02 1.31 16 44 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.08 1.76 6.46 -2.38 -0.02 1.75 16 49 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.36 18.46 6.63 -92.71 -0.61 17.85 16 51 H 0.24 14.89 6.77 -92.71 -0.63 14.26 16 Total: -1.00 -70.07 407.23 -0.23 -70.31 By element: Atomic # 1 Polarization: 52.00 SS G_CDS: -0.22 Total: 51.78 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 8.53 Total: 20.58 kcal Atomic # 7 Polarization: -165.06 SS G_CDS: -10.54 Total: -175.61 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.06 Total: -20.67 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.60 kcal Total: -70.07 -0.23 -70.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271862114.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.865 kcal (2) G-P(sol) polarization free energy of solvation -70.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds