Wall clock time and date at job start Wed Apr 1 2020 05:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99806 * 2 1 4 4 C 1.50695 * 120.00397 * 179.72957 * 2 1 3 5 5 N 1.46503 * 109.47032 * 95.90004 * 4 2 1 6 6 C 1.36742 * 127.13318 * 264.48749 * 5 4 2 7 7 C 1.50700 * 126.34906 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.47067 * 90.00062 * 7 6 5 9 9 C 1.50700 * 109.47067 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99753 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00048 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99836 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00030 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47047 * 60.00362 * 13 11 9 15 15 H 1.48503 * 109.47111 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47294 * 299.99986 * 13 11 9 17 17 N 1.30292 * 107.30274 * 179.97438 * 6 5 4 18 18 N 1.28531 * 110.05721 * 0.02562 * 17 6 5 19 19 C 1.31219 * 109.85807 * 359.74153 * 18 17 6 20 20 N 1.38575 * 126.47548 * 180.25665 * 19 18 17 21 21 C 1.47442 * 111.00488 * 253.99660 * 20 19 18 22 22 C 1.54315 * 107.23475 * 123.25331 * 21 20 19 23 23 C 1.55137 * 103.01967 * 22.29019 * 22 21 20 24 24 H 1.09003 * 110.99226 * 82.47249 * 23 22 21 25 25 C 1.50698 * 110.99230 * 206.25160 * 23 22 21 26 26 O 1.21284 * 119.99568 * 118.54531 * 25 23 22 27 27 N 1.34778 * 119.99837 * 298.54297 * 25 23 22 28 28 C 1.46498 * 119.99423 * 179.97438 * 27 25 23 29 29 C 1.47843 * 110.99899 * 14.84137 * 20 19 18 30 30 H 1.07997 * 120.00538 * 5.71149 * 1 2 3 31 31 H 1.08008 * 119.99697 * 185.71795 * 1 2 3 32 32 H 1.09007 * 109.47212 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.47465 * 119.99973 * 3 2 1 34 34 H 1.08997 * 109.47959 * 240.00545 * 3 2 1 35 35 H 1.09006 * 109.47400 * 215.89940 * 4 2 1 36 36 H 1.08998 * 109.47009 * 335.89899 * 4 2 1 37 37 H 1.09004 * 109.46546 * 210.00290 * 7 6 5 38 38 H 1.08997 * 109.47102 * 329.99752 * 7 6 5 39 39 H 1.08997 * 109.46858 * 299.99952 * 8 7 6 40 40 H 1.09004 * 109.46867 * 59.99520 * 8 7 6 41 41 H 0.97000 * 120.00071 * 179.97438 * 12 11 9 42 42 H 1.08997 * 109.89013 * 242.66900 * 21 20 19 43 43 H 1.09006 * 109.88659 * 3.85100 * 21 20 19 44 44 H 1.09003 * 110.70359 * 140.66766 * 22 21 20 45 45 H 1.08998 * 110.70966 * 263.73224 * 22 21 20 46 46 H 0.96998 * 119.99997 * 0.02562 * 27 25 23 47 47 H 1.09003 * 109.47297 * 299.99771 * 28 27 25 48 48 H 1.08997 * 109.47611 * 60.00544 * 28 27 25 49 49 H 1.09003 * 109.46851 * 180.02562 * 28 27 25 50 50 H 1.09000 * 110.37569 * 332.46208 * 29 20 19 51 51 H 1.09003 * 110.37341 * 94.80555 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3050 0.0062 5 7 2.4307 -1.6633 -1.3661 6 6 1.7491 -2.4927 -2.2132 7 6 0.4639 -3.2190 -1.9099 8 6 -0.7242 -2.3390 -2.3034 9 6 -2.0094 -3.0655 -2.0007 10 1 -1.9814 -4.0560 -1.5711 11 6 -3.2208 -2.4658 -2.2722 12 7 -3.2547 -1.2598 -2.7958 13 14 -4.8137 -3.3666 -1.8977 14 1 -4.8812 -3.6700 -0.4456 15 1 -5.9670 -2.5125 -2.2795 16 1 -4.8595 -4.6337 -2.6709 17 7 2.4162 -2.5377 -3.3314 18 7 3.4650 -1.7993 -3.2491 19 6 3.5209 -1.2348 -2.0659 20 7 4.5030 -0.3690 -1.6117 21 6 5.3937 -1.0396 -0.6469 22 6 6.8325 -0.9165 -1.1910 23 6 6.7433 0.3060 -2.1418 24 1 6.8285 1.2399 -1.5862 25 6 7.7903 0.2269 -3.2227 26 8 7.4564 0.1672 -4.3871 27 7 9.0977 0.2226 -2.8954 28 6 10.1156 0.1450 -3.9462 29 6 5.3213 0.1391 -2.7333 30 1 -0.5401 0.9306 -0.0931 31 1 -0.5400 -0.9308 0.0932 32 1 1.3550 2.1337 0.0005 33 1 2.6901 1.3630 0.8900 34 1 2.6900 1.3631 -0.8900 35 1 2.9662 -1.2006 0.6083 36 1 1.4328 -2.0867 0.4295 37 1 0.4303 -4.1496 -2.4764 38 1 0.4147 -3.4406 -0.8438 39 1 -0.6904 -1.4084 -1.7369 40 1 -0.6749 -2.1174 -3.3695 41 1 -4.1070 -0.8380 -2.9872 42 1 5.3217 -0.5520 0.3252 43 1 5.1196 -2.0909 -0.5580 44 1 7.5358 -0.7239 -0.3807 45 1 7.1154 -1.8149 -1.7395 46 1 9.3647 0.2700 -1.9641 47 1 9.9830 -0.7764 -4.5132 48 1 10.0142 1.0005 -4.6141 49 1 11.1069 0.1529 -3.4931 50 1 5.3328 -0.5811 -3.5514 51 1 4.9383 1.0998 -3.0777 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342091481.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:27 Heat of formation + Delta-G solvation = 66.534717 kcal Electronic energy + Delta-G solvation = -31483.087776 eV Core-core repulsion = 27419.418909 eV Total energy + Delta-G solvation = -4063.668867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.60359 -40.43240 -38.43069 -36.59931 -34.94940 -34.14967 -33.18369 -32.65933 -31.28308 -29.62337 -28.21133 -27.38589 -27.01059 -26.54063 -25.20297 -23.21287 -22.43745 -21.78522 -20.56533 -20.42179 -19.75593 -18.62608 -17.90461 -17.01024 -16.49928 -16.29229 -16.07990 -15.82456 -15.50627 -15.12888 -14.51495 -14.41091 -14.18493 -13.94861 -13.76699 -13.64411 -13.21714 -13.15514 -13.05070 -12.79950 -12.69437 -12.51240 -12.23749 -12.19405 -11.77909 -11.71925 -11.57524 -11.34983 -11.30267 -11.10891 -10.96063 -10.86497 -10.69944 -10.31619 -10.10955 -9.95356 -9.77513 -9.65019 -9.50344 -9.24714 -9.14443 -8.83057 -8.35163 -7.96890 -6.02544 -4.06459 2.02444 2.26902 2.33595 2.70615 2.99302 3.31405 3.33403 3.36986 3.39233 3.80223 4.10091 4.16040 4.40176 4.42863 4.70270 4.72832 4.90552 4.92008 4.94619 4.96267 5.07233 5.14331 5.20295 5.29853 5.33207 5.35614 5.43781 5.47861 5.50507 5.59878 5.65496 5.75447 5.78170 5.90189 5.97743 6.05857 6.22620 6.28170 6.30699 6.38926 6.49847 6.57514 6.72387 6.86544 6.97102 7.04307 7.07954 7.49230 7.63129 7.74586 7.89514 7.95926 8.32720 8.99335 9.26752 9.57441 11.07988 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020441 B = 0.002451 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.451919 B =11422.684009 C =12004.276470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.179 4.179 3 C -0.107 4.107 4 C 0.156 3.844 5 N -0.467 5.467 6 C 0.214 3.786 7 C -0.032 4.032 8 C 0.024 3.976 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.889 5.889 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 N -0.296 5.296 18 N -0.319 5.319 19 C 0.327 3.673 20 N -0.442 5.442 21 C 0.046 3.954 22 C -0.127 4.127 23 C -0.119 4.119 24 H 0.115 0.885 25 C 0.522 3.478 26 O -0.525 6.525 27 N -0.737 5.737 28 C 0.087 3.913 29 C 0.072 3.928 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.023 0.977 41 H 0.262 0.738 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.401 0.599 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.074 0.926 50 H 0.096 0.904 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.092 5.414 10.873 27.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.180 4.180 3 C -0.164 4.164 4 C 0.034 3.966 5 N -0.161 5.161 6 C -0.053 4.053 7 C -0.072 4.072 8 C -0.014 4.014 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.528 5.528 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 N -0.135 5.135 18 N -0.162 5.162 19 C -0.029 4.029 20 N -0.166 5.166 21 C -0.081 4.081 22 C -0.165 4.165 23 C -0.142 4.142 24 H 0.133 0.867 25 C 0.308 3.692 26 O -0.400 6.400 27 N -0.389 5.389 28 C -0.057 4.057 29 C -0.055 4.055 30 H 0.120 0.880 31 H 0.133 0.867 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.235 0.765 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.115 0.885 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 24.878 5.537 8.772 26.954 hybrid contribution -0.819 -0.471 1.574 1.836 sum 24.059 5.066 10.346 26.675 Atomic orbital electron populations 1.24138 0.94839 1.03468 0.94150 1.21602 0.95446 0.94823 1.06166 1.20739 0.99812 0.93706 1.02119 1.20646 1.00377 0.96139 0.79469 1.46295 1.18770 1.36876 1.14129 1.25584 0.97985 0.95115 0.86606 1.20442 0.86803 0.98872 1.01039 1.19239 0.89492 0.94763 0.97912 1.21085 0.90588 1.02192 1.42330 0.92535 1.24981 0.99116 0.94905 0.95099 1.69966 1.25937 1.13856 1.43016 0.86667 0.82953 0.79748 0.78677 1.20266 1.21342 1.20175 1.74026 1.02396 1.18006 1.19055 1.74462 1.15865 1.10311 1.15606 1.22341 0.91365 0.98599 0.90638 1.60326 1.11260 1.30094 1.14919 1.22923 0.90239 0.98628 0.96320 1.22752 0.97496 0.97512 0.98769 1.22441 0.94596 1.01167 0.95958 0.86714 1.20343 0.83111 0.75780 0.89996 1.90777 1.81163 1.47870 1.20156 1.45777 1.06032 1.76472 1.10622 1.21544 0.90254 1.02480 0.91467 1.22872 0.87640 1.02699 0.92311 0.88003 0.86712 0.92520 0.92311 0.91029 0.89326 0.88272 0.89479 0.91491 0.95127 0.95903 0.92877 0.89088 0.91892 0.89452 0.90447 0.76526 0.92143 0.92141 0.90694 0.88538 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 12.21 29.02 0.35 -1.72 16 2 C -0.18 -2.57 5.63 -101.07 -0.57 -3.14 16 3 C -0.11 -1.32 10.12 36.01 0.36 -0.96 16 4 C 0.16 2.11 6.24 -5.19 -0.03 2.08 16 5 N -0.47 -7.95 2.79 -115.37 -0.32 -8.27 16 6 C 0.21 4.36 7.32 -154.01 -1.13 3.23 16 7 C -0.03 -0.65 5.52 -27.88 -0.15 -0.81 16 8 C 0.02 0.60 4.95 -27.88 -0.14 0.46 16 9 C -0.52 -14.10 9.11 -34.44 -0.31 -14.42 16 10 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 13 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 17 N -0.30 -6.69 12.18 32.99 0.40 -6.29 16 18 N -0.32 -6.63 10.72 30.31 0.33 -6.31 16 19 C 0.33 5.59 6.65 -318.88 -2.12 3.47 16 20 N -0.44 -5.64 4.61 -171.30 -0.79 -6.43 16 21 C 0.05 0.42 6.13 -2.84 -0.02 0.40 16 22 C -0.13 -0.87 6.36 -24.91 -0.16 -1.03 16 23 C -0.12 -1.00 3.43 -89.63 -0.31 -1.31 16 24 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 25 C 0.52 5.28 7.16 -10.99 -0.08 5.20 16 26 O -0.52 -7.93 15.80 5.55 0.09 -7.84 16 27 N -0.74 -4.68 5.66 -67.08 -0.38 -5.06 16 28 C 0.09 0.51 10.70 59.85 0.64 1.15 16 29 C 0.07 0.92 5.66 -2.29 -0.01 0.91 16 30 H 0.10 1.62 7.84 -52.49 -0.41 1.21 16 31 H 0.11 2.05 6.92 -52.48 -0.36 1.69 16 32 H 0.06 0.69 7.79 -51.93 -0.40 0.28 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.98 7.54 -51.93 -0.39 0.59 16 35 H 0.09 0.94 7.42 -51.93 -0.39 0.56 16 36 H 0.10 1.28 6.92 -51.93 -0.36 0.92 16 37 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 38 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 39 H 0.03 0.77 5.01 -51.93 -0.26 0.51 16 40 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.66 7.57 -51.93 -0.39 0.27 16 44 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.64 8.04 -51.93 -0.42 0.23 16 46 H 0.40 1.21 8.83 -40.82 -0.36 0.85 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 50 H 0.10 1.59 6.16 -51.93 -0.32 1.27 16 51 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 413.24 15.07 6.23 6.23 Total: -1.00 -35.93 413.24 -10.71 -46.64 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -8.21 Total: 1.46 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -3.77 Total: -4.88 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.03 Total: -57.69 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.93 -10.71 -46.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342091481.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.176 kcal (2) G-P(sol) polarization free energy of solvation -35.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds