Wall clock time and date at job start Wed Apr 1 2020 05:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99806 * 2 1 4 4 C 1.50695 * 120.00397 * 179.72957 * 2 1 3 5 5 N 1.46503 * 109.47032 * 95.90004 * 4 2 1 6 6 C 1.36742 * 127.13318 * 264.48749 * 5 4 2 7 7 C 1.50700 * 126.34906 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.47067 * 90.00062 * 7 6 5 9 9 C 1.50700 * 109.47067 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99753 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00048 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99836 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00030 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47047 * 60.00362 * 13 11 9 15 15 H 1.48503 * 109.47111 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47294 * 299.99986 * 13 11 9 17 17 N 1.30292 * 107.30274 * 179.97438 * 6 5 4 18 18 N 1.28531 * 110.05721 * 0.02562 * 17 6 5 19 19 C 1.31219 * 109.85807 * 359.74153 * 18 17 6 20 20 N 1.38575 * 126.47548 * 180.25665 * 19 18 17 21 21 C 1.47442 * 111.00488 * 253.99660 * 20 19 18 22 22 C 1.54315 * 107.23475 * 123.25331 * 21 20 19 23 23 C 1.55137 * 103.01967 * 22.29019 * 22 21 20 24 24 H 1.09003 * 110.99226 * 82.47249 * 23 22 21 25 25 C 1.50698 * 110.99230 * 206.25160 * 23 22 21 26 26 O 1.21284 * 119.99568 * 118.54531 * 25 23 22 27 27 N 1.34778 * 119.99837 * 298.54297 * 25 23 22 28 28 C 1.46498 * 119.99423 * 179.97438 * 27 25 23 29 29 C 1.47843 * 110.99899 * 14.84137 * 20 19 18 30 30 H 1.07997 * 120.00538 * 5.71149 * 1 2 3 31 31 H 1.08008 * 119.99697 * 185.71795 * 1 2 3 32 32 H 1.09007 * 109.47212 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.47465 * 119.99973 * 3 2 1 34 34 H 1.08997 * 109.47959 * 240.00545 * 3 2 1 35 35 H 1.09006 * 109.47400 * 215.89940 * 4 2 1 36 36 H 1.08998 * 109.47009 * 335.89899 * 4 2 1 37 37 H 1.09004 * 109.46546 * 210.00290 * 7 6 5 38 38 H 1.08997 * 109.47102 * 329.99752 * 7 6 5 39 39 H 1.08997 * 109.46858 * 299.99952 * 8 7 6 40 40 H 1.09004 * 109.46867 * 59.99520 * 8 7 6 41 41 H 0.97000 * 120.00071 * 179.97438 * 12 11 9 42 42 H 1.08997 * 109.89013 * 242.66900 * 21 20 19 43 43 H 1.09006 * 109.88659 * 3.85100 * 21 20 19 44 44 H 1.09003 * 110.70359 * 140.66766 * 22 21 20 45 45 H 1.08998 * 110.70966 * 263.73224 * 22 21 20 46 46 H 0.96998 * 119.99997 * 0.02562 * 27 25 23 47 47 H 1.09003 * 109.47297 * 299.99771 * 28 27 25 48 48 H 1.08997 * 109.47611 * 60.00544 * 28 27 25 49 49 H 1.09003 * 109.46851 * 180.02562 * 28 27 25 50 50 H 1.09000 * 110.37569 * 332.46208 * 29 20 19 51 51 H 1.09003 * 110.37341 * 94.80555 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3050 0.0062 5 7 2.4307 -1.6633 -1.3661 6 6 1.7491 -2.4927 -2.2132 7 6 0.4639 -3.2190 -1.9099 8 6 -0.7242 -2.3390 -2.3034 9 6 -2.0094 -3.0655 -2.0007 10 1 -1.9814 -4.0560 -1.5711 11 6 -3.2208 -2.4658 -2.2722 12 7 -3.2547 -1.2598 -2.7958 13 14 -4.8137 -3.3666 -1.8977 14 1 -4.8812 -3.6700 -0.4456 15 1 -5.9670 -2.5125 -2.2795 16 1 -4.8595 -4.6337 -2.6709 17 7 2.4162 -2.5377 -3.3314 18 7 3.4650 -1.7993 -3.2491 19 6 3.5209 -1.2348 -2.0659 20 7 4.5030 -0.3690 -1.6117 21 6 5.3937 -1.0396 -0.6469 22 6 6.8325 -0.9165 -1.1910 23 6 6.7433 0.3060 -2.1418 24 1 6.8285 1.2399 -1.5862 25 6 7.7903 0.2269 -3.2227 26 8 7.4564 0.1672 -4.3871 27 7 9.0977 0.2226 -2.8954 28 6 10.1156 0.1450 -3.9462 29 6 5.3213 0.1391 -2.7333 30 1 -0.5401 0.9306 -0.0931 31 1 -0.5400 -0.9308 0.0932 32 1 1.3550 2.1337 0.0005 33 1 2.6901 1.3630 0.8900 34 1 2.6900 1.3631 -0.8900 35 1 2.9662 -1.2006 0.6083 36 1 1.4328 -2.0867 0.4295 37 1 0.4303 -4.1496 -2.4764 38 1 0.4147 -3.4406 -0.8438 39 1 -0.6904 -1.4084 -1.7369 40 1 -0.6749 -2.1174 -3.3695 41 1 -4.1070 -0.8380 -2.9872 42 1 5.3217 -0.5520 0.3252 43 1 5.1196 -2.0909 -0.5580 44 1 7.5358 -0.7239 -0.3807 45 1 7.1154 -1.8149 -1.7395 46 1 9.3647 0.2700 -1.9641 47 1 9.9830 -0.7764 -4.5132 48 1 10.0142 1.0005 -4.6141 49 1 11.1069 0.1529 -3.4931 50 1 5.3328 -0.5811 -3.5514 51 1 4.9383 1.0998 -3.0777 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342091481.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:26 Heat of formation + Delta-G solvation = 43.129685 kcal Electronic energy + Delta-G solvation = -31484.102695 eV Core-core repulsion = 27419.418909 eV Total energy + Delta-G solvation = -4064.683785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.04613 -41.25846 -39.35031 -37.86193 -36.00272 -35.66607 -34.48509 -34.11733 -32.80941 -30.49855 -29.70663 -28.42384 -27.87244 -27.66885 -27.05719 -24.20716 -23.79998 -23.07764 -21.73817 -21.53475 -20.95192 -19.80880 -18.82658 -18.57671 -17.86197 -17.51337 -17.09811 -16.76634 -16.60727 -16.42410 -15.94999 -15.60628 -15.48009 -14.95499 -14.89372 -14.73683 -14.55418 -14.30579 -14.22702 -13.99513 -13.82860 -13.32990 -13.23732 -13.13747 -13.08430 -12.86250 -12.83362 -12.72650 -12.67271 -12.48551 -12.31619 -12.27144 -11.96607 -11.88042 -11.77323 -11.45107 -11.27567 -11.02741 -10.93999 -10.54600 -10.51120 -10.14309 -10.03664 -9.35752 -8.16106 -6.27542 0.65917 0.97726 1.42952 1.46175 1.53171 1.55439 1.60108 1.80983 2.22165 2.43501 2.77830 3.17928 3.29296 3.34778 3.55426 3.63801 3.75940 3.83032 4.01809 4.11810 4.20879 4.21470 4.26030 4.31854 4.41439 4.49981 4.61541 4.64381 4.68627 4.72185 4.74555 4.76112 4.90829 4.93077 4.94225 4.96473 4.97100 5.01625 5.06323 5.15548 5.21210 5.43352 5.48885 5.51266 5.54394 5.65437 5.66663 5.84694 5.85369 6.17600 6.22149 6.54563 6.87496 7.25922 7.41188 7.76222 8.95055 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020441 B = 0.002451 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.451919 B =11422.684009 C =12004.276470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.163 4.163 3 C -0.104 4.104 4 C 0.147 3.853 5 N -0.461 5.461 6 C 0.200 3.800 7 C -0.017 4.017 8 C 0.033 3.967 9 C -0.535 4.535 10 H 0.069 0.931 11 C 0.005 3.995 12 N -0.930 5.930 13 Si 0.962 3.038 14 H -0.260 1.260 15 H -0.289 1.289 16 H -0.271 1.271 17 N -0.338 5.338 18 N -0.365 5.365 19 C 0.351 3.649 20 N -0.432 5.432 21 C 0.039 3.961 22 C -0.115 4.115 23 C -0.103 4.103 24 H 0.154 0.846 25 C 0.517 3.483 26 O -0.588 6.588 27 N -0.716 5.716 28 C 0.082 3.918 29 C 0.065 3.935 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.026 0.974 40 H -0.030 1.030 41 H 0.261 0.739 42 H 0.133 0.867 43 H 0.050 0.950 44 H 0.140 0.860 45 H 0.058 0.942 46 H 0.423 0.577 47 H 0.042 0.958 48 H 0.047 0.953 49 H 0.115 0.885 50 H 0.053 0.947 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.600 5.738 15.049 31.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C -0.160 4.160 4 C 0.027 3.973 5 N -0.155 5.155 6 C -0.069 4.069 7 C -0.057 4.057 8 C -0.005 4.005 9 C -0.573 4.573 10 H 0.087 0.913 11 C -0.194 4.194 12 N -0.570 5.570 13 Si 0.787 3.213 14 H -0.184 1.184 15 H -0.215 1.215 16 H -0.197 1.197 17 N -0.177 5.177 18 N -0.208 5.208 19 C -0.007 4.007 20 N -0.157 5.157 21 C -0.087 4.087 22 C -0.153 4.153 23 C -0.125 4.125 24 H 0.172 0.828 25 C 0.303 3.697 26 O -0.468 6.468 27 N -0.368 5.368 28 C -0.062 4.062 29 C -0.062 4.062 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.149 0.851 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.045 0.955 40 H -0.011 1.011 41 H 0.070 0.930 42 H 0.151 0.849 43 H 0.069 0.931 44 H 0.158 0.842 45 H 0.077 0.923 46 H 0.260 0.740 47 H 0.060 0.940 48 H 0.066 0.934 49 H 0.134 0.866 50 H 0.072 0.928 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 27.444 5.849 13.020 30.934 hybrid contribution -1.449 -0.482 0.277 1.552 sum 25.995 5.367 13.297 29.687 Atomic orbital electron populations 1.23989 0.95794 1.02324 0.97294 1.21888 0.94916 0.96312 1.03229 1.20774 0.99805 0.92268 1.03196 1.21046 1.02449 0.95843 0.78009 1.46359 1.18096 1.36087 1.14930 1.25342 0.98132 0.96347 0.87047 1.20162 0.85330 0.97590 1.02593 1.19039 0.91380 0.95602 0.94474 1.21505 0.91342 1.02683 1.41811 0.91302 1.25905 1.02977 0.95620 0.94871 1.70123 1.26735 1.15675 1.44426 0.85543 0.78162 0.78269 0.79317 1.18423 1.21473 1.19662 1.73909 1.03593 1.19523 1.20646 1.74401 1.16152 1.12110 1.18162 1.22804 0.91687 0.96752 0.89434 1.60584 1.11330 1.28840 1.14903 1.23229 0.90451 0.98164 0.96816 1.22790 0.97184 0.95831 0.99480 1.22394 0.90828 1.03783 0.95454 0.82850 1.20715 0.84552 0.74992 0.89428 1.90765 1.82243 1.51035 1.22728 1.45640 1.04813 1.74342 1.12022 1.21663 0.91907 1.01020 0.91585 1.22803 0.90877 1.00835 0.91733 0.88504 0.88872 0.92639 0.88629 0.92135 0.85104 0.87522 0.89946 0.88541 0.95537 1.01118 0.92988 0.84914 0.93136 0.84161 0.92303 0.74003 0.93953 0.93381 0.86630 0.92827 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 12.21 67.79 0.83 -4.29 16 2 C -0.16 -4.42 5.63 -16.48 -0.09 -4.52 16 3 C -0.10 -2.29 10.12 71.24 0.72 -1.57 16 4 C 0.15 3.64 6.24 85.63 0.53 4.17 16 5 N -0.46 -15.50 2.79 -518.91 -1.45 -16.95 16 6 C 0.20 8.41 7.32 137.64 1.01 9.42 16 7 C -0.02 -0.72 5.52 29.85 0.16 -0.56 16 8 C 0.03 1.75 4.95 29.85 0.15 1.90 16 9 C -0.54 -29.41 9.11 25.60 0.23 -29.18 16 10 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 11 C 0.00 0.25 5.46 84.65 0.46 0.72 16 12 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 13 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 14 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 15 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 N -0.34 -16.14 12.18 -49.54 -0.60 -16.75 16 18 N -0.36 -15.97 10.72 -58.01 -0.62 -16.59 16 19 C 0.35 11.98 6.65 260.11 1.73 13.71 16 20 N -0.43 -10.21 4.61 -695.88 -3.21 -13.41 16 21 C 0.04 0.55 6.13 86.65 0.53 1.08 16 22 C -0.11 -1.09 6.36 31.77 0.20 -0.88 16 23 C -0.10 -1.43 3.43 -10.15 -0.03 -1.46 16 24 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 25 C 0.52 9.83 7.16 87.66 0.63 10.46 16 26 O -0.59 -18.57 15.80 -3.04 -0.05 -18.62 16 27 N -0.72 -7.15 5.66 -484.52 -2.74 -9.89 16 28 C 0.08 0.82 10.70 127.77 1.37 2.19 16 29 C 0.07 1.65 5.66 86.78 0.49 2.14 16 30 H 0.10 3.20 7.84 -2.91 -0.02 3.18 16 31 H 0.09 3.45 6.92 -2.91 -0.02 3.43 16 32 H 0.05 1.24 7.79 -2.38 -0.02 1.23 16 33 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.06 1.52 7.54 -2.39 -0.02 1.50 16 35 H 0.13 2.15 7.42 -2.38 -0.02 2.13 16 36 H 0.11 2.52 6.92 -2.39 -0.02 2.50 16 37 H 0.08 3.51 8.14 -2.39 -0.02 3.50 16 38 H 0.10 3.44 7.18 -2.39 -0.02 3.43 16 39 H 0.03 1.41 5.01 -2.39 -0.01 1.40 16 40 H -0.03 -1.85 8.14 -2.39 -0.02 -1.87 16 41 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.05 0.89 7.57 -2.38 -0.02 0.87 16 44 H 0.14 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.06 0.83 8.04 -2.39 -0.02 0.81 16 46 H 0.42 0.58 8.83 -92.71 -0.82 -0.24 16 47 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 50 H 0.05 1.88 6.16 -2.39 -0.01 1.86 16 51 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -87.71 413.24 2.68 -85.03 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.12 Total: 14.37 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 8.92 Total: 3.33 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -8.34 Total: -129.74 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.05 Total: -18.62 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -87.71 2.68 -85.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342091481.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.159 kcal (2) G-P(sol) polarization free energy of solvation -87.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds