Wall clock time and date at job start Wed Apr 1 2020 05:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 119.99933 * 2 1 4 4 C 1.50703 * 120.00034 * 179.97438 * 2 1 3 5 5 N 1.46499 * 109.46842 * 94.88392 * 4 2 1 6 6 C 1.36742 * 127.14122 * 94.47652 * 5 4 2 7 7 C 1.50699 * 126.34373 * 0.04029 * 6 5 4 8 8 C 1.52997 * 109.47206 * 263.09121 * 7 6 5 9 9 C 1.50698 * 109.47503 * 184.82252 * 8 7 6 10 10 H 1.08002 * 119.99825 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00203 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00021 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99908 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46828 * 90.00270 * 13 11 9 15 15 H 1.48493 * 109.46907 * 210.00089 * 13 11 9 16 16 H 1.48499 * 109.47393 * 330.00304 * 13 11 9 17 17 N 1.30291 * 107.30919 * 180.22813 * 6 5 4 18 18 N 1.28535 * 110.05263 * 359.77630 * 17 6 5 19 19 C 1.31213 * 109.85721 * 359.97438 * 18 17 6 20 20 N 1.38584 * 126.47150 * 179.97438 * 19 18 17 21 21 C 1.46894 * 110.99857 * 341.47528 * 20 19 18 22 22 C 1.53241 * 109.33851 * 187.25175 * 21 20 19 23 23 N 1.47079 * 108.52371 * 306.17012 * 22 21 20 24 24 C 1.34774 * 120.87992 * 231.18969 * 23 22 21 25 25 C 1.50707 * 119.99938 * 179.97438 * 24 23 22 26 26 O 1.21283 * 120.00116 * 359.97438 * 24 23 22 27 27 C 1.47072 * 118.23656 * 51.45750 * 23 22 21 28 28 C 1.46901 * 110.99763 * 105.77436 * 20 19 18 29 29 H 1.08006 * 120.00386 * 0.02562 * 1 2 3 30 30 H 1.08009 * 120.00085 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47302 * 275.25381 * 3 2 1 32 32 H 1.09001 * 109.47371 * 35.25861 * 3 2 1 33 33 H 1.09005 * 109.46984 * 155.25675 * 3 2 1 34 34 H 1.08992 * 109.47256 * 334.88435 * 4 2 1 35 35 H 1.09001 * 109.47266 * 214.87781 * 4 2 1 36 36 H 1.08999 * 109.47567 * 23.08989 * 7 6 5 37 37 H 1.09006 * 109.47320 * 143.09298 * 7 6 5 38 38 H 1.09005 * 109.47283 * 304.82589 * 8 7 6 39 39 H 1.09004 * 109.46957 * 64.81938 * 8 7 6 40 40 H 0.97000 * 120.00346 * 180.02562 * 12 11 9 41 41 H 1.09003 * 109.49740 * 67.29152 * 21 20 19 42 42 H 1.08998 * 109.51733 * 307.22071 * 21 20 19 43 43 H 1.09002 * 109.62760 * 186.45647 * 22 21 20 44 44 H 1.09005 * 109.63007 * 65.88067 * 22 21 20 45 45 H 1.08994 * 109.46955 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.46842 * 299.99950 * 25 24 23 47 47 H 1.08996 * 109.46881 * 59.99874 * 25 24 23 48 48 H 1.08995 * 109.63339 * 68.25078 * 27 23 22 49 49 H 1.09001 * 109.63047 * 188.83507 * 27 23 22 50 50 H 1.08993 * 109.49546 * 292.70463 * 28 20 19 51 51 H 1.08995 * 109.49382 * 52.76464 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 7 2.4094 -1.6698 -1.3755 6 6 3.5801 -1.4045 -2.0304 7 6 4.7725 -0.6746 -1.4679 8 6 4.7184 0.7942 -1.8927 9 6 5.9689 1.4971 -1.4312 10 1 6.7265 0.9509 -0.8887 11 6 6.1456 2.8377 -1.7005 12 7 7.2372 3.4510 -1.2982 13 14 4.8351 3.7826 -2.6382 14 1 3.8586 4.3585 -1.6790 15 1 5.4730 4.8774 -3.4125 16 1 4.1319 2.8630 -3.5682 17 7 3.4720 -1.8962 -3.2321 18 7 2.3233 -2.4540 -3.3784 19 6 1.6315 -2.3475 -2.2685 20 7 0.3503 -2.8271 -2.0472 21 6 -0.3382 -3.0949 -3.3169 22 6 -1.8026 -3.4478 -3.0355 23 7 -1.8389 -4.5511 -2.0636 24 6 -2.5669 -5.6599 -2.3026 25 6 -2.5894 -6.7787 -1.2932 26 8 -3.2039 -5.7572 -3.3301 27 6 -1.0645 -4.4098 -0.8212 28 6 0.3756 -4.0216 -1.1925 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5401 -0.9354 0.0004 31 1 2.1636 1.6668 -1.0233 32 1 1.5184 2.0394 0.5932 33 1 3.0534 1.1531 0.4302 34 1 1.4393 -2.0848 0.4371 35 1 2.9752 -1.1980 0.5882 36 1 4.7580 -0.7389 -0.3799 37 1 5.6883 -1.1288 -1.8465 38 1 4.6466 0.8560 -2.9786 39 1 3.8470 1.2704 -1.4433 40 1 7.3614 4.3943 -1.4873 41 1 0.1460 -3.9293 -3.8243 42 1 -0.2929 -2.2086 -3.9497 43 1 -2.2886 -3.7584 -3.9604 44 1 -2.3158 -2.5792 -2.6227 45 1 -3.2273 -7.5839 -1.6575 46 1 -1.5772 -7.1551 -1.1454 47 1 -2.9803 -6.4060 -0.3465 48 1 -1.5080 -3.6320 -0.1997 49 1 -1.0622 -5.3568 -0.2815 50 1 0.8498 -4.8430 -1.7294 51 1 0.9391 -3.8072 -0.2844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342762372.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:37 Heat of formation + Delta-G solvation = 76.816230 kcal Electronic energy + Delta-G solvation = -31890.964255 eV Core-core repulsion = 27827.741228 eV Total energy + Delta-G solvation = -4063.223027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.82882 -40.53894 -38.39685 -36.89560 -35.22980 -34.10569 -33.32265 -32.13338 -31.80295 -30.37554 -29.05665 -27.49033 -27.27283 -26.62167 -25.52961 -24.18485 -22.54883 -21.61311 -21.09135 -20.13322 -19.31386 -18.83426 -17.79507 -17.09182 -16.73837 -16.46111 -16.06469 -16.00402 -15.90169 -15.33793 -15.00477 -14.67812 -14.35362 -14.14101 -13.97305 -13.78147 -13.59000 -13.38163 -13.16552 -12.92318 -12.70023 -12.66020 -12.55980 -12.23998 -12.03929 -11.90759 -11.78033 -11.66487 -11.60295 -11.34305 -11.29011 -11.07574 -10.69454 -10.27618 -10.22502 -10.09959 -9.93741 -9.82662 -9.53101 -9.33312 -9.18802 -9.09497 -8.58667 -8.23432 -6.11165 -4.09850 1.73135 1.97055 2.21100 2.43250 2.63533 3.10021 3.24539 3.35084 3.40996 3.54203 4.04831 4.24330 4.39171 4.39737 4.47104 4.55819 4.59471 4.71344 4.76377 4.82463 4.87553 4.91308 4.99271 5.06292 5.09145 5.21904 5.24431 5.28312 5.33868 5.37775 5.39765 5.53863 5.62907 5.72602 5.81842 5.87436 5.91272 6.05580 6.15086 6.21116 6.23052 6.40661 6.45622 6.49913 6.72517 6.74077 6.93552 7.16063 7.22667 7.31084 7.68887 7.73554 8.43022 8.92149 9.02630 9.50891 11.01805 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020492 B = 0.002672 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.058806 B =10476.540745 C =10720.157995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.144 4.144 3 C -0.126 4.126 4 C 0.148 3.852 5 N -0.469 5.469 6 C 0.213 3.787 7 C -0.022 4.022 8 C -0.014 4.014 9 C -0.520 4.520 10 H 0.075 0.925 11 C 0.073 3.927 12 N -0.900 5.900 13 Si 0.871 3.129 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.264 1.264 17 N -0.292 5.292 18 N -0.318 5.318 19 C 0.331 3.669 20 N -0.449 5.449 21 C 0.061 3.939 22 C 0.116 3.884 23 N -0.617 5.617 24 C 0.514 3.486 25 C -0.175 4.175 26 O -0.545 6.545 27 C 0.115 3.885 28 C 0.040 3.960 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.023 0.977 39 H 0.025 0.975 40 H 0.264 0.736 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.096 0.904 50 H 0.055 0.945 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.015 -16.363 7.827 27.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C -0.182 4.182 4 C 0.026 3.974 5 N -0.163 5.163 6 C -0.054 4.054 7 C -0.061 4.061 8 C -0.052 4.052 9 C -0.558 4.558 10 H 0.093 0.907 11 C -0.129 4.129 12 N -0.538 5.538 13 Si 0.698 3.302 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.189 1.189 17 N -0.131 5.131 18 N -0.162 5.162 19 C -0.026 4.026 20 N -0.174 5.174 21 C -0.067 4.067 22 C -0.007 4.007 23 N -0.352 5.352 24 C 0.303 3.697 25 C -0.234 4.234 26 O -0.422 6.422 27 C -0.008 4.008 28 C -0.088 4.088 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.096 0.904 45 H 0.111 0.889 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.101 0.899 49 H 0.115 0.885 50 H 0.073 0.927 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.177 -16.292 6.098 26.641 hybrid contribution -0.481 0.611 0.554 0.954 sum -20.658 -15.681 6.652 26.775 Atomic orbital electron populations 1.23768 0.94961 1.02114 0.98934 1.21849 0.95571 0.95317 1.01768 1.21078 1.00744 0.93475 1.02905 1.20873 1.01396 0.95386 0.79742 1.46325 1.13848 1.42834 1.13259 1.25634 0.89371 1.00489 0.89949 1.20236 0.89886 0.96807 0.99206 1.19769 0.98470 0.89451 0.97510 1.20991 1.03360 0.94659 1.36780 0.90728 1.24929 0.95252 0.97599 0.95136 1.69892 1.26311 1.10897 1.46717 0.86912 0.82398 0.80025 0.80880 1.20201 1.21234 1.18861 1.74053 1.11115 1.13589 1.14325 1.74548 1.00621 1.20850 1.20164 1.22219 0.91024 1.00761 0.88565 1.58562 1.09753 1.30846 1.18233 1.22407 0.92834 1.02914 0.88525 1.21792 0.95630 0.89068 0.94175 1.48244 1.48254 1.18122 1.20599 1.20840 0.78241 0.82901 0.87747 1.21953 1.04690 0.97558 0.99200 1.90730 1.43268 1.80055 1.28158 1.21960 0.89772 1.02824 0.86264 1.22741 0.97471 0.90841 0.97749 0.88179 0.88038 0.90879 0.91739 0.90275 0.88882 0.87778 0.90935 0.88827 0.95824 0.95735 0.92631 0.92169 0.88399 0.87925 0.90384 0.88882 0.89320 0.89281 0.89919 0.88538 0.92678 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 13.91 29.02 0.40 -1.19 16 2 C -0.14 -1.69 5.63 -101.06 -0.57 -2.26 16 3 C -0.13 -1.75 8.72 36.01 0.31 -1.44 16 4 C 0.15 1.63 6.17 -5.19 -0.03 1.59 16 5 N -0.47 -6.81 2.79 -115.37 -0.32 -7.13 16 6 C 0.21 3.83 7.32 -154.02 -1.13 2.70 16 7 C -0.02 -0.40 5.58 -27.89 -0.16 -0.56 16 8 C -0.01 -0.31 4.02 -27.89 -0.11 -0.42 16 9 C -0.52 -13.90 9.66 -34.44 -0.33 -14.23 16 10 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.90 -26.79 13.96 55.43 0.77 -26.01 16 13 Si 0.87 21.26 27.47 -169.99 -4.67 16.59 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 17 N -0.29 -5.93 12.18 32.99 0.40 -5.53 16 18 N -0.32 -5.83 11.47 30.31 0.35 -5.48 16 19 C 0.33 4.84 6.87 -318.87 -2.19 2.65 16 20 N -0.45 -4.77 4.64 -173.94 -0.81 -5.58 16 21 C 0.06 0.65 5.02 -3.70 -0.02 0.63 16 22 C 0.12 1.02 6.60 -3.60 -0.02 1.00 16 23 N -0.62 -4.79 3.00 -172.18 -0.52 -5.31 16 24 C 0.51 4.59 7.82 -10.98 -0.09 4.51 16 25 C -0.17 -0.81 8.68 36.01 0.31 -0.50 16 26 O -0.54 -7.30 16.54 5.55 0.09 -7.21 16 27 C 0.12 0.58 6.53 -3.36 -0.02 0.56 16 28 C 0.04 0.31 5.50 -3.46 -0.02 0.29 16 29 H 0.10 0.96 8.05 -52.48 -0.42 0.54 16 30 H 0.10 0.87 7.99 -52.48 -0.42 0.45 16 31 H 0.07 1.22 6.73 -51.93 -0.35 0.87 16 32 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.08 1.17 7.54 -51.93 -0.39 0.78 16 34 H 0.09 0.75 6.20 -51.93 -0.32 0.42 16 35 H 0.10 1.08 6.94 -51.93 -0.36 0.72 16 36 H 0.07 1.18 7.01 -51.93 -0.36 0.82 16 37 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 38 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 39 H 0.02 0.53 3.75 -51.93 -0.19 0.33 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 42 H 0.10 1.15 8.09 -51.93 -0.42 0.73 16 43 H 0.10 1.01 7.06 -51.93 -0.37 0.64 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.46 8.12 -51.93 -0.42 0.04 16 46 H 0.09 0.28 7.67 -51.93 -0.40 -0.12 16 47 H 0.09 0.23 7.99 -51.93 -0.41 -0.18 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.10 0.24 6.02 -51.93 -0.31 -0.07 16 50 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.09 0.58 6.34 -51.93 -0.33 0.25 16 LS Contribution 404.11 15.07 6.09 6.09 Total: -1.00 -35.27 404.11 -10.35 -45.62 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -7.98 Total: -1.34 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -3.76 Total: -4.72 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.12 Total: -55.04 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: 0.09 Total: -7.21 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.27 -10.35 -45.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342762372.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.440 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds