Wall clock time and date at job start Wed Apr 1 2020 05:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 119.99933 * 2 1 4 4 C 1.50703 * 120.00034 * 179.97438 * 2 1 3 5 5 N 1.46499 * 109.46842 * 94.88392 * 4 2 1 6 6 C 1.36742 * 127.14122 * 94.47652 * 5 4 2 7 7 C 1.50699 * 126.34373 * 0.04029 * 6 5 4 8 8 C 1.52997 * 109.47206 * 263.09121 * 7 6 5 9 9 C 1.50698 * 109.47503 * 184.82252 * 8 7 6 10 10 H 1.08002 * 119.99825 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00203 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00021 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99908 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46828 * 90.00270 * 13 11 9 15 15 H 1.48493 * 109.46907 * 210.00089 * 13 11 9 16 16 H 1.48499 * 109.47393 * 330.00304 * 13 11 9 17 17 N 1.30291 * 107.30919 * 180.22813 * 6 5 4 18 18 N 1.28535 * 110.05263 * 359.77630 * 17 6 5 19 19 C 1.31213 * 109.85721 * 359.97438 * 18 17 6 20 20 N 1.38584 * 126.47150 * 179.97438 * 19 18 17 21 21 C 1.46894 * 110.99857 * 341.47528 * 20 19 18 22 22 C 1.53241 * 109.33851 * 187.25175 * 21 20 19 23 23 N 1.47079 * 108.52371 * 306.17012 * 22 21 20 24 24 C 1.34774 * 120.87992 * 231.18969 * 23 22 21 25 25 C 1.50707 * 119.99938 * 179.97438 * 24 23 22 26 26 O 1.21283 * 120.00116 * 359.97438 * 24 23 22 27 27 C 1.47072 * 118.23656 * 51.45750 * 23 22 21 28 28 C 1.46901 * 110.99763 * 105.77436 * 20 19 18 29 29 H 1.08006 * 120.00386 * 0.02562 * 1 2 3 30 30 H 1.08009 * 120.00085 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47302 * 275.25381 * 3 2 1 32 32 H 1.09001 * 109.47371 * 35.25861 * 3 2 1 33 33 H 1.09005 * 109.46984 * 155.25675 * 3 2 1 34 34 H 1.08992 * 109.47256 * 334.88435 * 4 2 1 35 35 H 1.09001 * 109.47266 * 214.87781 * 4 2 1 36 36 H 1.08999 * 109.47567 * 23.08989 * 7 6 5 37 37 H 1.09006 * 109.47320 * 143.09298 * 7 6 5 38 38 H 1.09005 * 109.47283 * 304.82589 * 8 7 6 39 39 H 1.09004 * 109.46957 * 64.81938 * 8 7 6 40 40 H 0.97000 * 120.00346 * 180.02562 * 12 11 9 41 41 H 1.09003 * 109.49740 * 67.29152 * 21 20 19 42 42 H 1.08998 * 109.51733 * 307.22071 * 21 20 19 43 43 H 1.09002 * 109.62760 * 186.45647 * 22 21 20 44 44 H 1.09005 * 109.63007 * 65.88067 * 22 21 20 45 45 H 1.08994 * 109.46955 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.46842 * 299.99950 * 25 24 23 47 47 H 1.08996 * 109.46881 * 59.99874 * 25 24 23 48 48 H 1.08995 * 109.63339 * 68.25078 * 27 23 22 49 49 H 1.09001 * 109.63047 * 188.83507 * 27 23 22 50 50 H 1.08993 * 109.49546 * 292.70463 * 28 20 19 51 51 H 1.08995 * 109.49382 * 52.76464 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 7 2.4094 -1.6698 -1.3755 6 6 3.5801 -1.4045 -2.0304 7 6 4.7725 -0.6746 -1.4679 8 6 4.7184 0.7942 -1.8927 9 6 5.9689 1.4971 -1.4312 10 1 6.7265 0.9509 -0.8887 11 6 6.1456 2.8377 -1.7005 12 7 7.2372 3.4510 -1.2982 13 14 4.8351 3.7826 -2.6382 14 1 3.8586 4.3585 -1.6790 15 1 5.4730 4.8774 -3.4125 16 1 4.1319 2.8630 -3.5682 17 7 3.4720 -1.8962 -3.2321 18 7 2.3233 -2.4540 -3.3784 19 6 1.6315 -2.3475 -2.2685 20 7 0.3503 -2.8271 -2.0472 21 6 -0.3382 -3.0949 -3.3169 22 6 -1.8026 -3.4478 -3.0355 23 7 -1.8389 -4.5511 -2.0636 24 6 -2.5669 -5.6599 -2.3026 25 6 -2.5894 -6.7787 -1.2932 26 8 -3.2039 -5.7572 -3.3301 27 6 -1.0645 -4.4098 -0.8212 28 6 0.3756 -4.0216 -1.1925 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5401 -0.9354 0.0004 31 1 2.1636 1.6668 -1.0233 32 1 1.5184 2.0394 0.5932 33 1 3.0534 1.1531 0.4302 34 1 1.4393 -2.0848 0.4371 35 1 2.9752 -1.1980 0.5882 36 1 4.7580 -0.7389 -0.3799 37 1 5.6883 -1.1288 -1.8465 38 1 4.6466 0.8560 -2.9786 39 1 3.8470 1.2704 -1.4433 40 1 7.3614 4.3943 -1.4873 41 1 0.1460 -3.9293 -3.8243 42 1 -0.2929 -2.2086 -3.9497 43 1 -2.2886 -3.7584 -3.9604 44 1 -2.3158 -2.5792 -2.6227 45 1 -3.2273 -7.5839 -1.6575 46 1 -1.5772 -7.1551 -1.1454 47 1 -2.9803 -6.4060 -0.3465 48 1 -1.5080 -3.6320 -0.1997 49 1 -1.0622 -5.3568 -0.2815 50 1 0.8498 -4.8430 -1.7294 51 1 0.9391 -3.8072 -0.2844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342762372.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:36 Heat of formation + Delta-G solvation = 55.348014 kcal Electronic energy + Delta-G solvation = -31891.895187 eV Core-core repulsion = 27827.741228 eV Total energy + Delta-G solvation = -4064.153959 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.06966 -41.22893 -39.22385 -37.89298 -36.27476 -35.63222 -34.49191 -33.74227 -32.68885 -31.17480 -30.16205 -28.56848 -28.21590 -27.54911 -27.07630 -24.92251 -23.51137 -23.18764 -22.06142 -21.49684 -20.05756 -19.77952 -19.00634 -18.54301 -17.82678 -17.35764 -16.96712 -16.85782 -16.60890 -16.40536 -16.11359 -15.83811 -15.63922 -15.20571 -15.01988 -14.96506 -14.66918 -14.55789 -14.27008 -14.10989 -13.74759 -13.47466 -13.19851 -13.09833 -12.99861 -12.93037 -12.92084 -12.71783 -12.60310 -12.46150 -12.43405 -12.29028 -12.23866 -11.92123 -11.82933 -11.53549 -11.35715 -11.07547 -10.91683 -10.75113 -10.65980 -10.12237 -9.83044 -9.41773 -8.29531 -6.31274 0.65479 0.92084 1.28448 1.34680 1.44654 1.51977 1.60371 1.77632 1.96122 2.33036 2.60632 3.06537 3.41857 3.48809 3.58992 3.71639 3.75528 3.81301 3.88248 3.99542 4.11894 4.20585 4.22376 4.29122 4.34703 4.40829 4.51161 4.55086 4.61868 4.64749 4.65555 4.67633 4.73152 4.78281 4.79536 4.86706 4.93935 5.00373 5.01623 5.11324 5.12116 5.32107 5.35643 5.43991 5.46864 5.55843 5.63268 5.64873 5.85007 6.14054 6.26101 6.36763 6.75224 7.11481 7.32494 7.72809 8.86543 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020492 B = 0.002672 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.058806 B =10476.540745 C =10720.157995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.169 4.169 3 C -0.125 4.125 4 C 0.141 3.859 5 N -0.460 5.460 6 C 0.202 3.798 7 C -0.010 4.010 8 C -0.005 4.005 9 C -0.518 4.518 10 H 0.048 0.952 11 C 0.019 3.981 12 N -0.943 5.943 13 Si 0.929 3.071 14 H -0.256 1.256 15 H -0.286 1.286 16 H -0.267 1.267 17 N -0.333 5.333 18 N -0.360 5.360 19 C 0.353 3.647 20 N -0.437 5.437 21 C 0.068 3.932 22 C 0.125 3.875 23 N -0.617 5.617 24 C 0.506 3.494 25 C -0.167 4.167 26 O -0.601 6.601 27 C 0.119 3.881 28 C 0.036 3.964 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.133 0.867 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.082 0.918 38 H -0.002 1.002 39 H 0.040 0.960 40 H 0.266 0.734 41 H 0.040 0.960 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.119 0.881 48 H 0.106 0.894 49 H 0.133 0.867 50 H 0.042 0.958 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.229 -17.636 10.605 31.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.170 4.170 3 C -0.181 4.181 4 C 0.021 3.979 5 N -0.153 5.153 6 C -0.067 4.067 7 C -0.050 4.050 8 C -0.044 4.044 9 C -0.556 4.556 10 H 0.066 0.934 11 C -0.179 4.179 12 N -0.584 5.584 13 Si 0.754 3.246 14 H -0.180 1.180 15 H -0.212 1.212 16 H -0.191 1.191 17 N -0.172 5.172 18 N -0.204 5.204 19 C -0.004 4.004 20 N -0.162 5.162 21 C -0.060 4.060 22 C 0.001 3.999 23 N -0.350 5.350 24 C 0.297 3.703 25 C -0.226 4.226 26 O -0.482 6.482 27 C -0.003 4.003 28 C -0.092 4.092 29 H 0.123 0.877 30 H 0.144 0.856 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.151 0.849 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.017 0.983 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.105 0.895 46 H 0.128 0.872 47 H 0.137 0.863 48 H 0.124 0.876 49 H 0.151 0.849 50 H 0.061 0.939 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -23.392 -17.573 8.931 30.590 hybrid contribution 0.463 0.952 -0.261 1.090 sum -22.929 -16.621 8.671 29.617 Atomic orbital electron populations 1.24026 0.94234 1.03525 0.95222 1.21710 0.96143 0.94382 1.04791 1.20992 1.00782 0.95502 1.00850 1.21264 1.02533 0.96359 0.77729 1.46433 1.12510 1.41979 1.14386 1.25197 0.90345 1.01204 0.89976 1.19948 0.90233 0.94200 1.00627 1.19610 0.96966 0.92028 0.95753 1.21281 1.04115 0.94676 1.35561 0.93386 1.25697 0.97181 0.98797 0.96210 1.70017 1.28351 1.11388 1.48626 0.85981 0.80217 0.78562 0.79876 1.18044 1.21179 1.19140 1.73943 1.12616 1.14792 1.15851 1.74458 1.00808 1.22691 1.22458 1.22594 0.91539 0.98826 0.87437 1.58813 1.06899 1.32355 1.18173 1.22294 0.93936 1.01371 0.88428 1.21600 0.93803 0.90085 0.94364 1.48371 1.48083 1.17416 1.21153 1.21690 0.77232 0.83650 0.87727 1.21988 1.06105 0.95649 0.98881 1.90710 1.45725 1.81097 1.30683 1.22251 0.87290 1.05586 0.85176 1.22975 0.99845 0.88838 0.97506 0.87700 0.85635 0.94197 0.90341 0.91759 0.84901 0.87232 0.88471 0.89983 0.98332 0.94156 0.92498 0.94179 0.90088 0.89548 0.88904 0.89514 0.87176 0.86253 0.87603 0.84888 0.93942 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 13.91 67.79 0.94 -1.09 16 2 C -0.17 -3.42 5.63 -16.48 -0.09 -3.52 16 3 C -0.12 -3.29 8.72 71.24 0.62 -2.67 16 4 C 0.14 2.60 6.17 85.63 0.53 3.13 16 5 N -0.46 -12.49 2.79 -518.91 -1.45 -13.94 16 6 C 0.20 7.24 7.32 137.64 1.01 8.25 16 7 C -0.01 -0.39 5.58 29.85 0.17 -0.22 16 8 C -0.01 -0.24 4.02 29.85 0.12 -0.12 16 9 C -0.52 -28.45 9.66 25.60 0.25 -28.20 16 10 H 0.05 2.83 7.99 -2.91 -0.02 2.81 16 11 C 0.02 1.08 5.47 84.65 0.46 1.54 16 12 N -0.94 -57.51 13.96 21.45 0.30 -57.21 16 13 Si 0.93 44.44 27.47 68.60 1.88 46.32 16 14 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 15 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 16 H -0.27 -12.78 6.54 99.48 0.65 -12.13 16 17 N -0.33 -13.83 12.18 -49.54 -0.60 -14.43 16 18 N -0.36 -13.34 11.47 -58.00 -0.67 -14.01 16 19 C 0.35 9.82 6.87 260.11 1.79 11.61 16 20 N -0.44 -8.09 4.64 -704.21 -3.27 -11.36 16 21 C 0.07 1.38 5.02 86.38 0.43 1.81 16 22 C 0.12 1.99 6.60 86.35 0.57 2.56 16 23 N -0.62 -7.62 3.00 -817.03 -2.45 -10.07 16 24 C 0.51 7.86 7.82 87.66 0.69 8.54 16 25 C -0.17 -0.89 8.68 71.24 0.62 -0.27 16 26 O -0.60 -15.87 16.54 -3.04 -0.05 -15.92 16 27 C 0.12 0.56 6.53 86.51 0.57 1.13 16 28 C 0.04 0.39 5.50 86.54 0.48 0.87 16 29 H 0.10 1.56 8.05 -2.91 -0.02 1.54 16 30 H 0.13 1.35 7.99 -2.91 -0.02 1.33 16 31 H 0.04 1.30 6.73 -2.39 -0.02 1.28 16 32 H 0.08 1.77 8.10 -2.39 -0.02 1.75 16 33 H 0.06 1.84 7.54 -2.38 -0.02 1.83 16 34 H 0.13 1.37 6.20 -2.39 -0.01 1.35 16 35 H 0.11 1.93 6.94 -2.39 -0.02 1.91 16 36 H 0.10 3.11 7.01 -2.39 -0.02 3.09 16 37 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 38 H 0.00 -0.09 7.20 -2.38 -0.02 -0.11 16 39 H 0.04 1.74 3.75 -2.38 -0.01 1.73 16 40 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.04 0.98 8.13 -2.39 -0.02 0.96 16 42 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 43 H 0.09 1.70 7.06 -2.39 -0.02 1.69 16 44 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.09 0.63 8.12 -2.39 -0.02 0.61 16 46 H 0.11 0.15 7.67 -2.39 -0.02 0.13 16 47 H 0.12 -0.06 7.99 -2.39 -0.02 -0.07 16 48 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 49 H 0.13 -0.24 6.02 -2.39 -0.01 -0.26 16 50 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.11 0.80 6.34 -2.39 -0.02 0.79 16 Total: -1.00 -82.74 404.11 3.71 -79.03 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.88 Total: 8.26 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 9.14 Total: 3.34 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -8.14 Total: -121.03 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.05 Total: -15.92 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Total: -82.74 3.71 -79.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342762372.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.375 kcal (2) G-P(sol) polarization free energy of solvation -82.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds