Wall clock time and date at job start Wed Apr 1 2020 06:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.29113 * 126.00566 * 2 1 4 4 N 1.29014 * 110.25764 * 179.90721 * 3 2 1 5 5 C 1.32914 * 108.63825 * 359.97438 * 4 3 2 6 6 C 1.34395 * 126.00807 * 179.97438 * 2 1 3 7 7 C 1.50537 * 129.25355 * 0.17268 * 6 2 1 8 8 C 1.53435 * 108.32260 * 163.57405 * 7 6 2 9 9 H 1.08997 * 109.45627 * 289.70919 * 8 7 6 10 10 C 1.50702 * 109.45432 * 169.74327 * 8 7 6 11 11 O 1.21281 * 120.00180 * 359.96590 * 10 8 7 12 12 N 1.34776 * 119.99618 * 179.97438 * 10 8 7 13 13 C 1.46500 * 119.99892 * 185.12107 * 12 10 8 14 14 C 1.53006 * 109.47254 * 298.24017 * 13 12 10 15 15 C 1.52994 * 109.47354 * 58.24486 * 13 12 10 16 16 N 1.46499 * 109.47204 * 59.99649 * 15 13 12 17 17 C 1.36934 * 119.99892 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00388 * 0.02562 * 17 16 15 19 19 C 1.38821 * 119.99958 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99735 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99783 * 180.27799 * 19 17 16 22 22 H 1.48496 * 109.47239 * 269.72606 * 21 19 17 23 23 H 1.48499 * 109.47306 * 29.72711 * 21 19 17 24 24 H 1.48508 * 109.46851 * 149.72494 * 21 19 17 25 25 C 1.53008 * 109.47146 * 178.24665 * 13 12 10 26 26 C 1.52995 * 117.50132 * 132.08323 * 25 13 12 27 27 C 1.52991 * 117.50073 * 63.41953 * 25 13 12 28 28 C 1.53102 * 109.53956 * 49.72582 * 8 7 6 29 29 C 1.50592 * 129.16393 * 180.21112 * 5 4 3 30 30 H 1.09003 * 109.47019 * 270.02634 * 1 2 3 31 31 H 1.09002 * 109.47097 * 30.02129 * 1 2 3 32 32 H 1.08997 * 109.46981 * 150.02338 * 1 2 3 33 33 H 1.09002 * 109.69234 * 43.86473 * 7 6 2 34 34 H 1.09004 * 109.69010 * 283.28111 * 7 6 2 35 35 H 0.97001 * 120.00527 * 5.12182 * 12 10 8 36 36 H 1.08996 * 109.46987 * 179.97438 * 14 13 12 37 37 H 1.08999 * 109.46940 * 300.00724 * 14 13 12 38 38 H 1.09007 * 109.46234 * 60.00022 * 14 13 12 39 39 H 1.08999 * 109.46769 * 299.99986 * 15 13 12 40 40 H 1.09004 * 109.47379 * 180.02562 * 15 13 12 41 41 H 0.96997 * 120.00274 * 0.02562 * 16 15 13 42 42 H 0.97002 * 119.99802 * 179.97438 * 20 19 17 43 43 H 1.09006 * 115.54503 * 277.75024 * 25 13 12 44 44 H 1.09003 * 117.49708 * 359.97438 * 26 25 13 45 45 H 1.09002 * 117.49786 * 145.01423 * 26 25 13 46 46 H 1.08999 * 117.50197 * 214.97512 * 27 25 13 47 47 H 1.09002 * 117.50080 * 0.02562 * 27 25 13 48 48 H 1.09009 * 109.45536 * 49.95673 * 28 8 7 49 49 H 1.09000 * 109.45736 * 169.89117 * 28 8 7 50 50 H 1.08996 * 109.69400 * 283.10649 * 29 5 4 51 51 H 1.08993 * 109.69157 * 43.69151 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4657 0.6943 0.0020 5 6 3.5328 -0.6331 0.0039 6 6 2.2551 -1.0872 0.0005 7 6 1.8722 -2.5430 -0.0024 8 6 3.1016 -3.3644 -0.4123 9 1 3.3150 -3.1962 -1.4679 10 6 2.8266 -4.8282 -0.1827 11 8 1.7560 -5.1813 0.2645 12 7 3.7706 -5.7449 -0.4741 13 6 3.4655 -7.1730 -0.3576 14 6 3.1138 -7.5027 1.0946 15 6 2.2789 -7.5164 -1.2603 16 7 2.6157 -7.2008 -2.6507 17 6 1.7013 -7.4264 -3.6447 18 1 0.7317 -7.8365 -3.4038 19 6 2.0206 -7.1278 -4.9623 20 7 3.2024 -6.6284 -5.2561 21 14 0.7704 -7.4283 -6.3174 22 1 0.9425 -8.8022 -6.8538 23 1 -0.6010 -7.2798 -5.7675 24 1 0.9759 -6.4416 -7.4081 25 6 4.6853 -7.9918 -0.7852 26 6 5.1277 -9.1326 0.1332 27 6 5.9593 -7.8501 0.0499 28 6 4.3078 -2.9342 0.4267 29 6 4.7468 -1.5241 0.0109 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.0649 -2.7090 -0.7157 34 1 1.5483 -2.8395 0.9953 35 1 4.6521 -5.4592 -0.7610 36 1 2.8863 -8.5651 1.1811 37 1 3.9592 -7.2580 1.7376 38 1 2.2448 -6.9193 1.3992 39 1 1.4100 -6.9331 -0.9556 40 1 2.0516 -8.5789 -1.1733 41 1 3.4866 -6.8327 -2.8672 42 1 3.4257 -6.4201 -6.1768 43 1 4.8011 -8.1366 -1.8594 44 1 4.5501 -9.2997 1.0423 45 1 5.5350 -10.0279 -0.3367 46 1 6.9134 -7.9023 -0.4745 47 1 5.9284 -7.1740 0.9044 48 1 4.0343 -2.9331 1.4819 49 1 5.1295 -3.6322 0.2658 50 1 5.1855 -1.5550 -0.9865 51 1 5.4784 -1.1423 0.7228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481940269.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:54 Heat of formation + Delta-G solvation = 96.276061 kcal Electronic energy + Delta-G solvation = -32039.566078 eV Core-core repulsion = 27977.186893 eV Total energy + Delta-G solvation = -4062.379186 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.46821 -40.31232 -38.27681 -36.50933 -35.00114 -34.64967 -33.50057 -31.49146 -30.66677 -30.36416 -29.39131 -27.96256 -25.92578 -24.82668 -23.62915 -23.15958 -22.35957 -22.07607 -21.50030 -20.48905 -19.36458 -18.81735 -17.56309 -17.17986 -17.04114 -16.59845 -15.86263 -15.24977 -15.07192 -14.68946 -14.48479 -14.25945 -13.98514 -13.92573 -13.71799 -13.60356 -13.42882 -13.15041 -12.96231 -12.74379 -12.37286 -12.19049 -12.12621 -12.04817 -11.92499 -11.62994 -11.40948 -11.25434 -11.12247 -11.01758 -10.84754 -10.83893 -10.75274 -10.58535 -10.19091 -10.11144 -10.04601 -9.83602 -9.68546 -9.27686 -8.90099 -8.80420 -8.59142 -6.86493 -5.76268 -3.02348 1.48858 2.22222 2.47822 2.95639 3.31325 3.42935 3.48797 3.49894 3.99791 4.12043 4.35212 4.50535 4.60155 4.67368 4.68913 4.74222 4.79098 4.80504 5.03565 5.06448 5.10976 5.16496 5.22545 5.34615 5.35520 5.36805 5.45897 5.50305 5.59677 5.68571 5.74388 5.78106 5.80283 5.88653 5.94215 5.96326 6.04282 6.07313 6.17749 6.20418 6.24030 6.25745 6.43651 6.47517 6.55620 6.68757 6.88004 7.09574 7.72209 7.89316 8.43477 8.44008 8.58050 9.55089 10.13226 10.49187 11.46789 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008424 B = 0.003751 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.071790 B = 7463.224353 C = 9515.321088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.284 5.284 3 N -0.103 5.103 4 N -0.263 5.263 5 C -0.023 4.023 6 C -0.010 4.010 7 C -0.023 4.023 8 C -0.104 4.104 9 H 0.109 0.891 10 C 0.533 3.467 11 O -0.537 6.537 12 N -0.707 5.707 13 C 0.202 3.798 14 C -0.163 4.163 15 C 0.144 3.856 16 N -0.726 5.726 17 C -0.231 4.231 18 H 0.068 0.932 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.903 3.097 22 H -0.291 1.291 23 H -0.283 1.283 24 H -0.293 1.293 25 C -0.150 4.150 26 C -0.173 4.173 27 C -0.183 4.183 28 C -0.109 4.109 29 C -0.031 4.031 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.398 0.602 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.023 0.977 41 H 0.382 0.618 42 H 0.253 0.747 43 H 0.122 0.878 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.087 0.913 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.545 6.216 15.274 16.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.076 5.076 3 N -0.080 5.080 4 N -0.128 5.128 5 C -0.163 4.163 6 C -0.145 4.145 7 C -0.063 4.063 8 C -0.126 4.126 9 H 0.127 0.873 10 C 0.319 3.681 11 O -0.415 6.415 12 N -0.357 5.357 13 C 0.117 3.883 14 C -0.221 4.221 15 C 0.016 3.984 16 N -0.370 5.370 17 C -0.362 4.362 18 H 0.086 0.914 19 C -0.210 4.210 20 N -0.585 5.585 21 Si 0.735 3.265 22 H -0.218 1.218 23 H -0.209 1.209 24 H -0.219 1.219 25 C -0.168 4.168 26 C -0.211 4.211 27 C -0.220 4.220 28 C -0.147 4.147 29 C -0.070 4.070 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.232 0.768 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.216 0.784 42 H 0.063 0.937 43 H 0.140 0.860 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.110 0.890 48 H 0.092 0.908 49 H 0.100 0.900 50 H 0.106 0.894 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.588 7.514 15.493 17.292 hybrid contribution -0.251 -0.980 -1.313 1.658 sum 1.336 6.533 14.180 15.670 Atomic orbital electron populations 1.22299 0.72717 1.06154 1.05045 1.46803 1.09203 1.04612 1.46968 1.78552 0.96123 1.11354 1.22010 1.74763 1.09657 1.12011 1.16339 1.21671 0.95030 0.91316 1.08253 1.21896 0.91209 0.92388 1.08962 1.19914 0.98002 0.84313 1.04075 1.21335 0.95894 0.92230 1.03095 0.87329 1.20037 0.83993 0.87117 0.76983 1.90621 1.24570 1.81538 1.44732 1.45893 1.15301 1.05811 1.68714 1.20022 0.94225 0.78916 0.95139 1.22290 1.02549 1.02039 0.95204 1.21048 0.94537 0.97587 0.85261 1.42239 1.17205 1.77261 1.00320 1.19226 0.95602 1.34484 0.86918 0.91420 1.24663 0.96984 1.02261 0.97102 1.69640 1.20432 1.50342 1.18077 0.86239 0.80736 0.77377 0.82177 1.21824 1.20884 1.21896 1.22579 0.93898 1.01188 0.99159 1.23058 1.03602 0.92578 1.01846 1.22948 0.95358 1.00917 1.02766 1.21641 0.96862 0.96164 1.00068 1.19946 0.92488 0.91223 1.03308 0.88992 0.88005 0.87995 0.89282 0.88643 0.76819 0.91785 0.93003 0.90257 0.93719 0.95933 0.78377 0.93693 0.86019 0.88286 0.88947 0.88941 0.88995 0.90846 0.89983 0.89432 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 11.27 59.85 0.67 1.24 16 2 N -0.28 -3.42 3.73 -64.00 -0.24 -3.66 16 3 N -0.10 -1.51 13.19 60.35 0.80 -0.71 16 4 N -0.26 -4.06 12.40 33.16 0.41 -3.65 16 5 C -0.02 -0.30 7.11 -83.12 -0.59 -0.89 16 6 C -0.01 -0.13 6.76 -82.50 -0.56 -0.69 16 7 C -0.02 -0.27 4.70 -27.74 -0.13 -0.40 16 8 C -0.10 -1.23 2.51 -91.49 -0.23 -1.46 16 9 H 0.11 1.40 8.12 -51.93 -0.42 0.98 16 10 C 0.53 7.80 6.56 -10.98 -0.07 7.73 16 11 O -0.54 -9.38 12.06 5.56 0.07 -9.32 16 12 N -0.71 -9.81 4.60 -47.60 -0.22 -10.03 16 13 C 0.20 3.08 0.54 -131.82 -0.07 3.01 16 14 C -0.16 -2.18 7.06 37.16 0.26 -1.92 16 15 C 0.14 2.91 4.94 -4.05 -0.02 2.89 16 16 N -0.73 -17.55 5.03 -59.91 -0.30 -17.85 16 17 C -0.23 -6.37 9.99 -15.06 -0.15 -6.52 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.94 -27.42 13.06 55.49 0.72 -26.69 16 21 Si 0.90 22.34 29.55 -169.99 -5.02 17.32 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 25 C -0.15 -2.12 4.86 -90.62 -0.44 -2.56 16 26 C -0.17 -2.04 9.63 -26.70 -0.26 -2.30 16 27 C -0.18 -2.00 9.72 -26.70 -0.26 -2.26 16 28 C -0.11 -1.01 5.17 -26.46 -0.14 -1.14 16 29 C -0.03 -0.30 6.30 -27.71 -0.17 -0.48 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.10 0.61 7.71 -51.93 -0.40 0.21 16 33 H 0.09 1.08 7.87 -51.93 -0.41 0.67 16 34 H 0.10 1.09 7.78 -51.93 -0.40 0.69 16 35 H 0.40 4.77 7.56 -40.82 -0.31 4.46 16 36 H 0.06 0.81 6.81 -51.93 -0.35 0.46 16 37 H 0.05 0.60 7.00 -51.93 -0.36 0.24 16 38 H 0.08 1.20 6.13 -51.93 -0.32 0.89 16 39 H 0.05 1.00 6.22 -51.93 -0.32 0.68 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.38 9.48 6.63 -40.82 -0.27 9.21 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.12 2.12 7.09 -51.93 -0.37 1.75 16 44 H 0.10 1.08 5.88 -51.93 -0.31 0.78 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.09 0.91 7.39 -51.93 -0.38 0.53 16 48 H 0.07 0.67 8.12 -51.92 -0.42 0.25 16 49 H 0.08 0.62 7.20 -51.93 -0.37 0.25 16 50 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -34.46 398.20 -7.96 -42.42 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -7.93 Total: 12.45 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -2.25 Total: -6.27 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 1.17 Total: -62.60 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.32 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.46 -7.96 -42.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481940269.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.699 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds