Wall clock time and date at job start Wed Apr 1 2020 06:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.29113 * 126.00566 * 2 1 4 4 N 1.29014 * 110.25764 * 179.90721 * 3 2 1 5 5 C 1.32914 * 108.63825 * 359.97438 * 4 3 2 6 6 C 1.34395 * 126.00807 * 179.97438 * 2 1 3 7 7 C 1.50537 * 129.25355 * 0.17268 * 6 2 1 8 8 C 1.53435 * 108.32260 * 163.57405 * 7 6 2 9 9 H 1.08997 * 109.45627 * 289.70919 * 8 7 6 10 10 C 1.50702 * 109.45432 * 169.74327 * 8 7 6 11 11 O 1.21281 * 120.00180 * 359.96590 * 10 8 7 12 12 N 1.34776 * 119.99618 * 179.97438 * 10 8 7 13 13 C 1.46500 * 119.99892 * 185.12107 * 12 10 8 14 14 C 1.53006 * 109.47254 * 298.24017 * 13 12 10 15 15 C 1.52994 * 109.47354 * 58.24486 * 13 12 10 16 16 N 1.46499 * 109.47204 * 59.99649 * 15 13 12 17 17 C 1.36934 * 119.99892 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00388 * 0.02562 * 17 16 15 19 19 C 1.38821 * 119.99958 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99735 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99783 * 180.27799 * 19 17 16 22 22 H 1.48496 * 109.47239 * 269.72606 * 21 19 17 23 23 H 1.48499 * 109.47306 * 29.72711 * 21 19 17 24 24 H 1.48508 * 109.46851 * 149.72494 * 21 19 17 25 25 C 1.53008 * 109.47146 * 178.24665 * 13 12 10 26 26 C 1.52995 * 117.50132 * 132.08323 * 25 13 12 27 27 C 1.52991 * 117.50073 * 63.41953 * 25 13 12 28 28 C 1.53102 * 109.53956 * 49.72582 * 8 7 6 29 29 C 1.50592 * 129.16393 * 180.21112 * 5 4 3 30 30 H 1.09003 * 109.47019 * 270.02634 * 1 2 3 31 31 H 1.09002 * 109.47097 * 30.02129 * 1 2 3 32 32 H 1.08997 * 109.46981 * 150.02338 * 1 2 3 33 33 H 1.09002 * 109.69234 * 43.86473 * 7 6 2 34 34 H 1.09004 * 109.69010 * 283.28111 * 7 6 2 35 35 H 0.97001 * 120.00527 * 5.12182 * 12 10 8 36 36 H 1.08996 * 109.46987 * 179.97438 * 14 13 12 37 37 H 1.08999 * 109.46940 * 300.00724 * 14 13 12 38 38 H 1.09007 * 109.46234 * 60.00022 * 14 13 12 39 39 H 1.08999 * 109.46769 * 299.99986 * 15 13 12 40 40 H 1.09004 * 109.47379 * 180.02562 * 15 13 12 41 41 H 0.96997 * 120.00274 * 0.02562 * 16 15 13 42 42 H 0.97002 * 119.99802 * 179.97438 * 20 19 17 43 43 H 1.09006 * 115.54503 * 277.75024 * 25 13 12 44 44 H 1.09003 * 117.49708 * 359.97438 * 26 25 13 45 45 H 1.09002 * 117.49786 * 145.01423 * 26 25 13 46 46 H 1.08999 * 117.50197 * 214.97512 * 27 25 13 47 47 H 1.09002 * 117.50080 * 0.02562 * 27 25 13 48 48 H 1.09009 * 109.45536 * 49.95673 * 28 8 7 49 49 H 1.09000 * 109.45736 * 169.89117 * 28 8 7 50 50 H 1.08996 * 109.69400 * 283.10649 * 29 5 4 51 51 H 1.08993 * 109.69157 * 43.69151 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4657 0.6943 0.0020 5 6 3.5328 -0.6331 0.0039 6 6 2.2551 -1.0872 0.0005 7 6 1.8722 -2.5430 -0.0024 8 6 3.1016 -3.3644 -0.4123 9 1 3.3150 -3.1962 -1.4679 10 6 2.8266 -4.8282 -0.1827 11 8 1.7560 -5.1813 0.2645 12 7 3.7706 -5.7449 -0.4741 13 6 3.4655 -7.1730 -0.3576 14 6 3.1138 -7.5027 1.0946 15 6 2.2789 -7.5164 -1.2603 16 7 2.6157 -7.2008 -2.6507 17 6 1.7013 -7.4264 -3.6447 18 1 0.7317 -7.8365 -3.4038 19 6 2.0206 -7.1278 -4.9623 20 7 3.2024 -6.6284 -5.2561 21 14 0.7704 -7.4283 -6.3174 22 1 0.9425 -8.8022 -6.8538 23 1 -0.6010 -7.2798 -5.7675 24 1 0.9759 -6.4416 -7.4081 25 6 4.6853 -7.9918 -0.7852 26 6 5.1277 -9.1326 0.1332 27 6 5.9593 -7.8501 0.0499 28 6 4.3078 -2.9342 0.4267 29 6 4.7468 -1.5241 0.0109 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.0649 -2.7090 -0.7157 34 1 1.5483 -2.8395 0.9953 35 1 4.6521 -5.4592 -0.7610 36 1 2.8863 -8.5651 1.1811 37 1 3.9592 -7.2580 1.7376 38 1 2.2448 -6.9193 1.3992 39 1 1.4100 -6.9331 -0.9556 40 1 2.0516 -8.5789 -1.1733 41 1 3.4866 -6.8327 -2.8672 42 1 3.4257 -6.4201 -6.1768 43 1 4.8011 -8.1366 -1.8594 44 1 4.5501 -9.2997 1.0423 45 1 5.5350 -10.0279 -0.3367 46 1 6.9134 -7.9023 -0.4745 47 1 5.9284 -7.1740 0.9044 48 1 4.0343 -2.9331 1.4819 49 1 5.1295 -3.6322 0.2658 50 1 5.1855 -1.5550 -0.9865 51 1 5.4784 -1.1423 0.7228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481940269.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:53 Heat of formation + Delta-G solvation = 73.105091 kcal Electronic energy + Delta-G solvation = -32040.570847 eV Core-core repulsion = 27977.186893 eV Total energy + Delta-G solvation = -4063.383954 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -44.43956 -41.48302 -39.35913 -37.49816 -36.31832 -35.88111 -34.94155 -33.09968 -31.77227 -31.50609 -30.58520 -28.73938 -27.53817 -25.98044 -24.83268 -24.29811 -23.90011 -23.06698 -22.39814 -21.51544 -20.36491 -20.07674 -19.18858 -18.56238 -17.96840 -17.56708 -17.01813 -16.71897 -16.24865 -16.11813 -15.61364 -15.42009 -15.14832 -14.98340 -14.83352 -14.72975 -14.64079 -14.15463 -14.08723 -13.71065 -13.67388 -13.57647 -13.17178 -13.11404 -13.02632 -12.93698 -12.79973 -12.61257 -12.40090 -12.20308 -12.13451 -11.99728 -11.96823 -11.90653 -11.73130 -11.53462 -11.16738 -11.02337 -10.96080 -10.86363 -10.37585 -9.89252 -9.81381 -8.90951 -7.93519 -5.18569 0.52001 1.41731 1.45493 1.45656 1.46695 1.54058 1.80118 2.23982 2.56161 3.05320 3.19598 3.39479 3.46999 3.68736 3.71520 3.77740 3.81124 3.92927 3.99365 4.02314 4.17714 4.21936 4.23781 4.30011 4.32530 4.45078 4.49933 4.53702 4.56220 4.67121 4.73699 4.85248 4.90043 4.91930 4.94350 4.97266 5.05158 5.07770 5.09105 5.10014 5.19446 5.22324 5.32852 5.36687 5.39009 5.48882 5.54402 5.59691 5.78338 6.29311 6.77780 7.37249 7.43019 7.44596 8.13287 8.41428 9.29196 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008424 B = 0.003751 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.071790 B = 7463.224353 C = 9515.321088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.278 5.278 3 N -0.128 5.128 4 N -0.297 5.297 5 C -0.031 4.031 6 C -0.015 4.015 7 C -0.015 4.015 8 C -0.098 4.098 9 H 0.098 0.902 10 C 0.529 3.471 11 O -0.568 6.568 12 N -0.701 5.701 13 C 0.212 3.788 14 C -0.153 4.153 15 C 0.145 3.855 16 N -0.728 5.728 17 C -0.241 4.241 18 H 0.063 0.937 19 C -0.066 4.066 20 N -0.962 5.962 21 Si 0.963 3.037 22 H -0.287 1.287 23 H -0.276 1.276 24 H -0.295 1.295 25 C -0.175 4.175 26 C -0.167 4.167 27 C -0.153 4.153 28 C -0.098 4.098 29 C -0.028 4.028 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.408 0.592 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.022 0.978 40 H 0.014 0.986 41 H 0.378 0.622 42 H 0.250 0.750 43 H 0.084 0.916 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.112 0.888 48 H 0.080 0.920 49 H 0.105 0.895 50 H 0.092 0.908 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 5.747 16.690 17.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.071 5.071 3 N -0.105 5.105 4 N -0.160 5.160 5 C -0.173 4.173 6 C -0.151 4.151 7 C -0.054 4.054 8 C -0.120 4.120 9 H 0.116 0.884 10 C 0.316 3.684 11 O -0.447 6.447 12 N -0.352 5.352 13 C 0.126 3.874 14 C -0.211 4.211 15 C 0.017 3.983 16 N -0.371 5.371 17 C -0.373 4.373 18 H 0.081 0.919 19 C -0.259 4.259 20 N -0.613 5.613 21 Si 0.793 3.207 22 H -0.214 1.214 23 H -0.202 1.202 24 H -0.221 1.221 25 C -0.194 4.194 26 C -0.205 4.205 27 C -0.190 4.190 28 C -0.136 4.136 29 C -0.067 4.067 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.244 0.756 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.032 0.968 41 H 0.211 0.789 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.130 0.870 45 H 0.113 0.887 46 H 0.120 0.880 47 H 0.130 0.870 48 H 0.099 0.901 49 H 0.123 0.877 50 H 0.110 0.890 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.406 7.054 16.930 18.498 hybrid contribution -0.592 -0.887 -1.751 2.050 sum 1.814 6.167 15.179 16.484 Atomic orbital electron populations 1.22717 0.70303 1.07391 1.06886 1.47174 1.10622 1.03958 1.45344 1.78467 0.96418 1.12341 1.23283 1.74716 1.10266 1.13283 1.17760 1.22248 0.96451 0.91003 1.07554 1.22025 0.91305 0.92643 1.09094 1.19823 0.97692 0.83900 1.04013 1.21286 0.97288 0.90392 1.03008 0.88405 1.20494 0.83522 0.88168 0.76250 1.90612 1.25765 1.82203 1.46167 1.45865 1.15768 1.05296 1.68260 1.19792 0.92705 0.79806 0.95057 1.22202 1.02827 1.02199 0.93871 1.21095 0.96365 0.96491 0.84317 1.42296 1.16430 1.76947 1.01437 1.19520 0.95936 1.33768 0.88048 0.91938 1.25341 0.98730 1.02808 0.99019 1.69769 1.21862 1.51514 1.18111 0.85300 0.78971 0.77054 0.79425 1.21443 1.20179 1.22124 1.22258 0.95595 1.03831 0.97693 1.23179 1.03368 0.92627 1.01299 1.23043 0.93976 1.00151 1.01853 1.21615 0.96171 0.96104 0.99720 1.20066 0.91681 0.90873 1.04107 0.86827 0.86696 0.86902 0.90185 0.88209 0.75576 0.91057 0.90303 0.92066 0.95960 0.96788 0.78851 0.94115 0.89803 0.86969 0.88710 0.87964 0.86962 0.90145 0.87705 0.88992 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 11.27 127.77 1.44 2.33 16 2 N -0.28 -6.58 3.73 -356.40 -1.33 -7.91 16 3 N -0.13 -3.75 13.19 37.02 0.49 -3.26 16 4 N -0.30 -9.13 12.40 -48.99 -0.61 -9.74 16 5 C -0.03 -0.81 7.11 41.75 0.30 -0.51 16 6 C -0.02 -0.38 6.76 41.50 0.28 -0.09 16 7 C -0.01 -0.34 4.70 29.94 0.14 -0.19 16 8 C -0.10 -2.24 2.51 -11.36 -0.03 -2.27 16 9 H 0.10 2.49 8.12 -2.39 -0.02 2.47 16 10 C 0.53 15.11 6.56 87.66 0.57 15.68 16 11 O -0.57 -19.83 12.06 -3.03 -0.04 -19.86 16 12 N -0.70 -18.67 4.60 -422.91 -1.95 -20.62 16 13 C 0.21 6.28 0.54 3.61 0.00 6.28 16 14 C -0.15 -3.80 7.06 71.98 0.51 -3.29 16 15 C 0.14 5.96 4.94 86.38 0.43 6.39 16 16 N -0.73 -35.97 5.03 -343.45 -1.73 -37.70 16 17 C -0.24 -13.50 9.99 84.04 0.84 -12.66 16 18 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 19 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 20 N -0.96 -57.02 13.06 21.65 0.28 -56.74 16 21 Si 0.96 46.26 29.55 68.60 2.03 48.28 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 25 C -0.17 -4.74 4.86 -10.80 -0.05 -4.79 16 26 C -0.17 -3.51 9.63 30.62 0.29 -3.21 16 27 C -0.15 -2.85 9.72 30.62 0.30 -2.55 16 28 C -0.10 -1.59 5.17 30.77 0.16 -1.43 16 29 C -0.03 -0.52 6.30 29.96 0.19 -0.33 16 30 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.11 1.26 7.71 -2.39 -0.02 1.24 16 33 H 0.08 1.96 7.87 -2.39 -0.02 1.94 16 34 H 0.10 2.20 7.78 -2.38 -0.02 2.18 16 35 H 0.41 9.06 7.56 -92.71 -0.70 8.36 16 36 H 0.07 1.66 6.81 -2.39 -0.02 1.64 16 37 H 0.08 1.54 7.00 -2.39 -0.02 1.53 16 38 H 0.06 1.79 6.13 -2.38 -0.01 1.77 16 39 H 0.02 1.03 6.22 -2.39 -0.01 1.02 16 40 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.38 19.18 6.63 -92.71 -0.61 18.56 16 42 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 43 H 0.08 2.96 7.09 -2.38 -0.02 2.95 16 44 H 0.11 2.07 5.88 -2.39 -0.01 2.05 16 45 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.11 1.67 7.39 -2.39 -0.02 1.66 16 48 H 0.08 1.24 8.12 -2.38 -0.02 1.22 16 49 H 0.10 1.24 7.20 -2.39 -0.02 1.23 16 50 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -76.01 398.20 2.64 -73.37 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -0.35 Total: 38.12 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 5.84 Total: -3.95 kcal Atomic # 7 Polarization: -131.13 SS G_CDS: -4.84 Total: -135.96 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.04 Total: -19.86 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -76.01 2.64 -73.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481940269.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.478 kcal (2) G-P(sol) polarization free energy of solvation -76.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds