Wall clock time and date at job start Wed Apr 1 2020 05:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99733 * 2 1 4 4 N 1.46497 * 109.47271 * 126.22990 * 3 2 1 5 5 C 1.36451 * 127.13286 * 265.68357 * 4 3 2 6 6 N 1.38580 * 126.47258 * 359.97438 * 5 4 3 7 7 C 1.47895 * 111.00163 * 303.69882 * 6 5 4 8 8 C 1.53997 * 107.05854 * 145.84292 * 7 6 5 9 9 C 1.54601 * 105.22560 * 358.73079 * 8 7 6 10 10 H 1.08997 * 110.72536 * 96.45053 * 9 8 7 11 11 C 1.50700 * 110.72072 * 219.73553 * 9 8 7 12 12 O 1.21281 * 120.00289 * 118.54780 * 11 9 8 13 13 N 1.34774 * 120.00084 * 298.53747 * 11 9 8 14 14 C 1.46496 * 120.00408 * 180.02562 * 13 11 9 15 15 C 1.48537 * 110.99868 * 61.09838 * 6 5 4 16 16 N 1.31213 * 107.05572 * 180.23855 * 5 4 3 17 17 N 1.28531 * 109.85740 * 359.56003 * 16 5 4 18 18 C 1.30292 * 110.05351 * 0.45429 * 17 16 5 19 19 C 1.50705 * 126.34831 * 179.69129 * 18 17 16 20 20 C 1.52997 * 109.47118 * 127.07294 * 19 18 17 21 21 C 1.52998 * 109.47133 * 247.07501 * 19 18 17 22 22 C 1.50699 * 109.46845 * 7.07654 * 19 18 17 23 23 H 1.08004 * 120.00448 * 359.97438 * 22 19 18 24 24 C 1.37877 * 120.00083 * 180.02562 * 22 19 18 25 25 N 1.31515 * 119.99542 * 359.97438 * 24 22 19 26 26 Si 1.86799 * 120.00218 * 179.97438 * 24 22 19 27 27 H 1.48495 * 109.46857 * 60.00275 * 26 24 22 28 28 H 1.48499 * 109.46820 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47420 * 299.99821 * 26 24 22 30 30 H 1.07997 * 120.00071 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.99754 * 0.02562 * 1 2 3 32 32 H 1.07994 * 119.99858 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47425 * 6.22279 * 3 2 1 34 34 H 1.09004 * 109.46820 * 246.22737 * 3 2 1 35 35 H 1.09001 * 109.91930 * 26.49497 * 7 6 5 36 36 H 1.08997 * 109.92309 * 265.19857 * 7 6 5 37 37 H 1.08998 * 110.30825 * 117.69000 * 8 7 6 38 38 H 1.08997 * 110.31299 * 239.76600 * 8 7 6 39 39 H 0.97006 * 120.00145 * 0.02562 * 13 11 9 40 40 H 1.09006 * 109.46879 * 300.00366 * 14 13 11 41 41 H 1.08999 * 109.47164 * 59.99850 * 14 13 11 42 42 H 1.08997 * 109.47570 * 180.02562 * 14 13 11 43 43 H 1.08994 * 110.66762 * 318.71183 * 15 6 5 44 44 H 1.09001 * 110.66536 * 81.84519 * 15 6 5 45 45 H 1.09005 * 109.46810 * 68.87034 * 20 19 18 46 46 H 1.08993 * 109.47306 * 188.86431 * 20 19 18 47 47 H 1.09001 * 109.47156 * 308.87379 * 20 19 18 48 48 H 1.09003 * 109.46987 * 66.11252 * 21 19 18 49 49 H 1.08996 * 109.46879 * 186.11211 * 21 19 18 50 50 H 1.08999 * 109.47414 * 306.11893 * 21 19 18 51 51 H 0.97002 * 119.99646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0146 1.3199 1.1141 5 6 2.8162 1.8407 2.3597 6 7 1.6664 2.4633 2.8187 7 6 1.3007 3.6055 1.9532 8 6 -0.2374 3.6771 1.9258 9 6 -0.7146 2.4925 2.7971 10 1 -0.9294 2.8230 3.8133 11 6 -1.9218 1.8315 2.1832 12 8 -1.8695 0.6683 1.8440 13 7 -3.0597 2.5330 2.0114 14 6 -4.2335 1.8904 1.4152 15 6 0.5065 1.5364 2.7776 16 7 3.9218 1.6456 3.0389 17 7 4.7827 1.0348 2.3056 18 6 4.2851 0.8144 1.1218 19 6 4.9810 0.1300 -0.0264 20 6 4.1032 -1.0089 -0.5489 21 6 5.2272 1.1403 -1.1487 22 6 6.2991 -0.4276 0.4456 23 1 6.6027 -0.2990 1.4741 24 6 7.1179 -1.1013 -0.4357 25 7 6.7484 -1.2575 -1.6882 26 14 8.7520 -1.7919 0.1492 27 1 8.5134 -2.7727 1.2383 28 1 9.4377 -2.4664 -0.9822 29 1 9.6037 -0.6862 0.6565 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3605 2.1306 0.1114 34 1 2.6039 1.4126 -0.9405 35 1 1.6828 3.4449 0.9451 36 1 1.7081 4.5288 2.3649 37 1 -0.5798 4.6209 2.3503 38 1 -0.6032 3.5673 0.9049 39 1 -3.1016 3.4635 2.2825 40 1 -3.9862 1.5401 0.4130 41 1 -4.5365 1.0439 2.0314 42 1 -5.0510 2.6090 1.3571 43 1 0.5174 0.9469 1.8609 44 1 0.5015 0.8876 3.6535 45 1 3.2191 -0.5936 -1.0328 46 1 4.6672 -1.6012 -1.2694 47 1 3.7977 -1.6433 0.2832 48 1 5.9390 1.8932 -0.8101 49 1 5.6310 0.6243 -2.0198 50 1 4.2872 1.6231 -1.4157 51 1 7.3247 -1.7311 -2.3083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520447660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:30 Heat of formation + Delta-G solvation = 98.210456 kcal Electronic energy + Delta-G solvation = -33035.371415 eV Core-core repulsion = 28973.076111 eV Total energy + Delta-G solvation = -4062.295304 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.45562 -40.48943 -38.45456 -36.35944 -35.13598 -34.93720 -32.86577 -32.16246 -30.95802 -29.53763 -28.24477 -27.02281 -26.52029 -25.98340 -25.11523 -23.01824 -22.31821 -21.68417 -20.68358 -20.38449 -20.23006 -18.86458 -17.88318 -17.08093 -16.28266 -16.11571 -15.96688 -15.59478 -15.33036 -15.14903 -14.83732 -14.74256 -14.29700 -13.68241 -13.46831 -13.35249 -13.20722 -13.10302 -12.99617 -12.71788 -12.61117 -12.15066 -11.99797 -11.78113 -11.62877 -11.40769 -11.33029 -11.21999 -11.00899 -10.84353 -10.64797 -10.53038 -10.16996 -10.12485 -10.04334 -9.94033 -9.61932 -9.52980 -9.48363 -9.27042 -8.92883 -8.60177 -8.37036 -8.08846 -6.00602 -4.06197 2.09431 2.29843 2.41120 2.75688 3.12982 3.39507 3.41185 3.48703 3.62753 3.71643 4.08263 4.25740 4.37745 4.46913 4.61356 4.70897 4.86941 4.90074 4.98675 5.03238 5.10762 5.25166 5.28961 5.30859 5.37062 5.39990 5.48917 5.54127 5.65084 5.65336 5.74509 5.93702 5.96800 6.03612 6.35445 6.45053 6.50509 6.53943 6.60527 6.62885 6.68589 6.72399 6.77127 7.03951 7.11297 7.20915 7.36446 7.60280 7.82017 7.84272 7.84871 8.11778 8.33849 9.00796 9.56615 9.69356 11.02905 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020629 B = 0.003144 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.984912 B = 8903.090275 C = 9553.991946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.196 4.196 3 C 0.127 3.873 4 N -0.499 5.499 5 C 0.292 3.708 6 N -0.415 5.415 7 C 0.029 3.971 8 C -0.120 4.120 9 C -0.115 4.115 10 H 0.115 0.885 11 C 0.518 3.482 12 O -0.521 6.521 13 N -0.736 5.736 14 C 0.087 3.913 15 C 0.035 3.965 16 N -0.270 5.270 17 N -0.291 5.291 18 C 0.249 3.751 19 C 0.146 3.854 20 C -0.143 4.143 21 C -0.128 4.128 22 C -0.492 4.492 23 H 0.077 0.923 24 C 0.063 3.937 25 N -0.895 5.895 26 Si 0.901 3.099 27 H -0.276 1.276 28 H -0.289 1.289 29 H -0.276 1.276 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.402 0.598 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.023 0.977 46 H 0.099 0.901 47 H 0.026 0.974 48 H 0.036 0.964 49 H 0.095 0.905 50 H 0.005 0.995 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.009 10.601 1.431 25.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.214 4.214 3 C 0.004 3.996 4 N -0.197 5.197 5 C -0.063 4.063 6 N -0.138 5.138 7 C -0.099 4.099 8 C -0.158 4.158 9 C -0.137 4.137 10 H 0.133 0.867 11 C 0.304 3.696 12 O -0.396 6.396 13 N -0.388 5.388 14 C -0.057 4.057 15 C -0.092 4.092 16 N -0.111 5.111 17 N -0.129 5.129 18 C -0.018 4.018 19 C 0.143 3.857 20 C -0.201 4.201 21 C -0.186 4.186 22 C -0.530 4.530 23 H 0.095 0.905 24 C -0.138 4.138 25 N -0.535 5.535 26 Si 0.729 3.271 27 H -0.202 1.202 28 H -0.215 1.215 29 H -0.201 1.201 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.150 0.850 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.235 0.765 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.042 0.958 46 H 0.118 0.882 47 H 0.045 0.955 48 H 0.055 0.945 49 H 0.114 0.886 50 H 0.024 0.976 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.786 9.873 2.742 24.075 hybrid contribution -0.439 -0.076 -1.333 1.406 sum -22.225 9.798 1.409 24.329 Atomic orbital electron populations 1.23798 0.94775 1.02239 0.96788 1.23511 0.96214 0.99039 1.02670 1.21190 0.91447 0.96729 0.90270 1.47326 1.14284 1.46005 1.12045 1.22895 0.95824 1.04293 0.83243 1.61822 0.99668 1.06088 1.46245 1.23136 0.94774 0.95468 0.96518 1.22434 0.95159 0.98201 1.00040 1.22249 0.93127 0.96744 1.01555 0.86677 1.20437 0.83912 0.86852 0.78437 1.90765 1.83343 1.16325 1.49124 1.45797 1.12717 1.15490 1.64844 1.21539 0.86885 0.98538 0.98728 1.23677 0.85762 0.94373 1.05409 1.74441 0.97247 1.14550 1.24895 1.74279 1.22089 1.15458 1.01073 1.26170 0.80942 0.96186 0.98458 1.16918 0.93275 0.90559 0.84989 1.22196 0.97479 0.99572 1.00824 1.21905 0.97127 0.98056 1.01556 1.21059 1.00474 1.33962 0.97545 0.90513 1.24866 0.98276 0.95829 0.94799 1.69779 1.37438 1.42829 1.03445 0.86496 0.83367 0.79273 0.77995 1.20202 1.21502 1.20121 0.87705 0.89112 0.85009 0.89617 0.87253 0.92451 0.88663 0.89338 0.90788 0.76473 0.92139 0.92157 0.90737 0.89197 0.88849 0.95773 0.88210 0.95454 0.94506 0.88610 0.97595 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 10.45 29.01 0.30 -1.49 16 2 C -0.20 -2.93 7.46 -36.03 -0.27 -3.20 16 3 C 0.13 1.94 4.38 -5.20 -0.02 1.92 16 4 N -0.50 -9.59 2.70 -115.37 -0.31 -9.90 16 5 C 0.29 5.70 6.72 -318.88 -2.14 3.56 16 6 N -0.41 -6.25 5.35 -170.45 -0.91 -7.16 16 7 C 0.03 0.32 5.91 -2.76 -0.02 0.31 16 8 C -0.12 -0.86 6.44 -25.37 -0.16 -1.03 16 9 C -0.11 -1.00 3.46 -89.82 -0.31 -1.31 16 10 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 11 C 0.52 4.70 6.78 -10.99 -0.07 4.63 16 12 O -0.52 -6.59 12.88 5.56 0.07 -6.51 16 13 N -0.74 -4.18 5.66 -67.08 -0.38 -4.56 16 14 C 0.09 0.44 10.70 59.84 0.64 1.08 16 15 C 0.04 0.47 5.32 -1.81 -0.01 0.46 16 16 N -0.27 -6.35 12.23 30.31 0.37 -5.98 16 17 N -0.29 -7.44 11.01 32.99 0.36 -7.08 16 18 C 0.25 5.82 6.33 -154.02 -0.97 4.85 16 19 C 0.15 3.51 0.51 -156.81 -0.08 3.43 16 20 C -0.14 -3.22 6.80 37.16 0.25 -2.97 16 21 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 22 C -0.49 -13.45 7.91 -34.44 -0.27 -13.73 16 23 H 0.08 2.23 6.96 -52.48 -0.37 1.87 16 24 C 0.06 1.67 5.12 -17.82 -0.09 1.58 16 25 N -0.90 -23.77 9.40 55.43 0.52 -23.25 16 26 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 30 H 0.10 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.09 1.09 6.54 -52.48 -0.34 0.75 16 32 H 0.13 2.24 5.46 -52.49 -0.29 1.95 16 33 H 0.09 1.10 4.68 -51.93 -0.24 0.86 16 34 H 0.11 1.71 5.15 -51.93 -0.27 1.45 16 35 H 0.06 0.70 5.02 -51.93 -0.26 0.44 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 39 H 0.40 1.14 8.82 -40.82 -0.36 0.78 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.09 1.28 2.28 -51.93 -0.12 1.16 16 44 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.02 0.46 4.43 -51.93 -0.23 0.23 16 46 H 0.10 2.47 5.88 -51.93 -0.31 2.17 16 47 H 0.03 0.62 7.74 -51.93 -0.40 0.22 16 48 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.10 2.33 6.26 -51.93 -0.32 2.01 16 50 H 0.01 0.10 5.75 -51.93 -0.30 -0.19 16 51 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -32.96 376.77 -9.70 -42.66 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.15 Total: 4.10 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.93 Total: -4.54 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.35 Total: -57.93 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: 0.07 Total: -6.51 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.96 -9.70 -42.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520447660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.869 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds