Wall clock time and date at job start Wed Apr 1 2020 05:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99733 * 2 1 4 4 N 1.46497 * 109.47271 * 126.22990 * 3 2 1 5 5 C 1.36451 * 127.13286 * 265.68357 * 4 3 2 6 6 N 1.38580 * 126.47258 * 359.97438 * 5 4 3 7 7 C 1.47895 * 111.00163 * 303.69882 * 6 5 4 8 8 C 1.53997 * 107.05854 * 145.84292 * 7 6 5 9 9 C 1.54601 * 105.22560 * 358.73079 * 8 7 6 10 10 H 1.08997 * 110.72536 * 96.45053 * 9 8 7 11 11 C 1.50700 * 110.72072 * 219.73553 * 9 8 7 12 12 O 1.21281 * 120.00289 * 118.54780 * 11 9 8 13 13 N 1.34774 * 120.00084 * 298.53747 * 11 9 8 14 14 C 1.46496 * 120.00408 * 180.02562 * 13 11 9 15 15 C 1.48537 * 110.99868 * 61.09838 * 6 5 4 16 16 N 1.31213 * 107.05572 * 180.23855 * 5 4 3 17 17 N 1.28531 * 109.85740 * 359.56003 * 16 5 4 18 18 C 1.30292 * 110.05351 * 0.45429 * 17 16 5 19 19 C 1.50705 * 126.34831 * 179.69129 * 18 17 16 20 20 C 1.52997 * 109.47118 * 127.07294 * 19 18 17 21 21 C 1.52998 * 109.47133 * 247.07501 * 19 18 17 22 22 C 1.50699 * 109.46845 * 7.07654 * 19 18 17 23 23 H 1.08004 * 120.00448 * 359.97438 * 22 19 18 24 24 C 1.37877 * 120.00083 * 180.02562 * 22 19 18 25 25 N 1.31515 * 119.99542 * 359.97438 * 24 22 19 26 26 Si 1.86799 * 120.00218 * 179.97438 * 24 22 19 27 27 H 1.48495 * 109.46857 * 60.00275 * 26 24 22 28 28 H 1.48499 * 109.46820 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47420 * 299.99821 * 26 24 22 30 30 H 1.07997 * 120.00071 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.99754 * 0.02562 * 1 2 3 32 32 H 1.07994 * 119.99858 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47425 * 6.22279 * 3 2 1 34 34 H 1.09004 * 109.46820 * 246.22737 * 3 2 1 35 35 H 1.09001 * 109.91930 * 26.49497 * 7 6 5 36 36 H 1.08997 * 109.92309 * 265.19857 * 7 6 5 37 37 H 1.08998 * 110.30825 * 117.69000 * 8 7 6 38 38 H 1.08997 * 110.31299 * 239.76600 * 8 7 6 39 39 H 0.97006 * 120.00145 * 0.02562 * 13 11 9 40 40 H 1.09006 * 109.46879 * 300.00366 * 14 13 11 41 41 H 1.08999 * 109.47164 * 59.99850 * 14 13 11 42 42 H 1.08997 * 109.47570 * 180.02562 * 14 13 11 43 43 H 1.08994 * 110.66762 * 318.71183 * 15 6 5 44 44 H 1.09001 * 110.66536 * 81.84519 * 15 6 5 45 45 H 1.09005 * 109.46810 * 68.87034 * 20 19 18 46 46 H 1.08993 * 109.47306 * 188.86431 * 20 19 18 47 47 H 1.09001 * 109.47156 * 308.87379 * 20 19 18 48 48 H 1.09003 * 109.46987 * 66.11252 * 21 19 18 49 49 H 1.08996 * 109.46879 * 186.11211 * 21 19 18 50 50 H 1.08999 * 109.47414 * 306.11893 * 21 19 18 51 51 H 0.97002 * 119.99646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0146 1.3199 1.1141 5 6 2.8162 1.8407 2.3597 6 7 1.6664 2.4633 2.8187 7 6 1.3007 3.6055 1.9532 8 6 -0.2374 3.6771 1.9258 9 6 -0.7146 2.4925 2.7971 10 1 -0.9294 2.8230 3.8133 11 6 -1.9218 1.8315 2.1832 12 8 -1.8695 0.6683 1.8440 13 7 -3.0597 2.5330 2.0114 14 6 -4.2335 1.8904 1.4152 15 6 0.5065 1.5364 2.7776 16 7 3.9218 1.6456 3.0389 17 7 4.7827 1.0348 2.3056 18 6 4.2851 0.8144 1.1218 19 6 4.9810 0.1300 -0.0264 20 6 4.1032 -1.0089 -0.5489 21 6 5.2272 1.1403 -1.1487 22 6 6.2991 -0.4276 0.4456 23 1 6.6027 -0.2990 1.4741 24 6 7.1179 -1.1013 -0.4357 25 7 6.7484 -1.2575 -1.6882 26 14 8.7520 -1.7919 0.1492 27 1 8.5134 -2.7727 1.2383 28 1 9.4377 -2.4664 -0.9822 29 1 9.6037 -0.6862 0.6565 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3605 2.1306 0.1114 34 1 2.6039 1.4126 -0.9405 35 1 1.6828 3.4449 0.9451 36 1 1.7081 4.5288 2.3649 37 1 -0.5798 4.6209 2.3503 38 1 -0.6032 3.5673 0.9049 39 1 -3.1016 3.4635 2.2825 40 1 -3.9862 1.5401 0.4130 41 1 -4.5365 1.0439 2.0314 42 1 -5.0510 2.6090 1.3571 43 1 0.5174 0.9469 1.8609 44 1 0.5015 0.8876 3.6535 45 1 3.2191 -0.5936 -1.0328 46 1 4.6672 -1.6012 -1.2694 47 1 3.7977 -1.6433 0.2832 48 1 5.9390 1.8932 -0.8101 49 1 5.6310 0.6243 -2.0198 50 1 4.2872 1.6231 -1.4157 51 1 7.3247 -1.7311 -2.3083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520447660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:28 Heat of formation + Delta-G solvation = 76.530063 kcal Electronic energy + Delta-G solvation = -33036.311547 eV Core-core repulsion = 28973.076111 eV Total energy + Delta-G solvation = -4063.235436 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.03991 -41.30936 -39.41672 -37.99834 -36.64434 -35.56426 -34.05807 -33.69147 -32.63311 -30.40877 -29.73240 -27.95104 -27.83385 -27.56841 -27.12143 -24.11918 -23.45752 -22.96408 -22.08096 -21.58320 -21.02681 -20.44767 -18.83749 -18.13990 -17.90007 -17.27587 -17.03336 -16.88544 -16.68136 -16.38747 -16.06657 -15.92317 -15.31508 -15.24615 -14.68301 -14.57111 -14.34601 -14.15214 -14.01906 -13.80016 -13.56942 -13.42475 -13.09399 -13.02208 -13.00750 -12.79343 -12.73090 -12.64824 -12.52541 -12.39518 -12.22518 -12.01842 -11.92193 -11.88626 -11.80556 -11.38319 -11.02341 -10.86452 -10.71343 -10.45812 -10.38191 -10.03703 -9.94184 -9.80998 -8.06033 -6.17110 0.77594 1.00797 1.43925 1.44557 1.52686 1.60638 1.70152 1.97667 2.16359 2.47393 2.59972 3.19623 3.22897 3.39064 3.53811 3.67618 3.76633 3.84710 3.99408 4.08624 4.17517 4.20823 4.30079 4.34451 4.55592 4.57976 4.60950 4.68486 4.71093 4.74282 4.78479 4.82980 4.84768 4.90496 4.94510 4.98489 5.01149 5.04633 5.09958 5.24150 5.44483 5.46143 5.46849 5.49758 5.53809 5.58368 5.71875 5.94176 6.04832 6.28082 6.40594 6.59206 6.85908 7.29097 7.48516 7.98318 8.94973 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020629 B = 0.003144 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.984912 B = 8903.090275 C = 9553.991946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.221 4.221 3 C 0.125 3.875 4 N -0.491 5.491 5 C 0.320 3.680 6 N -0.423 5.423 7 C 0.021 3.979 8 C -0.106 4.106 9 C -0.102 4.102 10 H 0.136 0.864 11 C 0.518 3.482 12 O -0.563 6.563 13 N -0.717 5.717 14 C 0.084 3.916 15 C 0.027 3.973 16 N -0.320 5.320 17 N -0.336 5.336 18 C 0.232 3.768 19 C 0.143 3.857 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.517 4.517 23 H 0.049 0.951 24 C 0.032 3.968 25 N -0.901 5.901 26 Si 0.947 3.053 27 H -0.282 1.282 28 H -0.275 1.275 29 H -0.280 1.280 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.050 0.950 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.089 0.911 39 H 0.420 0.580 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.054 0.946 46 H 0.078 0.922 47 H 0.011 0.989 48 H 0.018 0.982 49 H 0.080 0.920 50 H 0.037 0.963 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.625 12.908 0.695 29.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.239 4.239 3 C 0.004 3.996 4 N -0.187 5.187 5 C -0.036 4.036 6 N -0.147 5.147 7 C -0.106 4.106 8 C -0.144 4.144 9 C -0.124 4.124 10 H 0.154 0.846 11 C 0.304 3.696 12 O -0.442 6.442 13 N -0.370 5.370 14 C -0.060 4.060 15 C -0.100 4.100 16 N -0.161 5.161 17 N -0.173 5.173 18 C -0.037 4.037 19 C 0.140 3.860 20 C -0.184 4.184 21 C -0.174 4.174 22 C -0.556 4.556 23 H 0.067 0.933 24 C -0.168 4.168 25 N -0.540 5.540 26 Si 0.774 3.226 27 H -0.208 1.208 28 H -0.200 1.200 29 H -0.206 1.206 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.068 0.932 36 H 0.123 0.877 37 H 0.148 0.852 38 H 0.108 0.892 39 H 0.256 0.744 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.126 0.874 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.030 0.970 48 H 0.038 0.962 49 H 0.099 0.901 50 H 0.056 0.944 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.443 12.225 1.991 28.297 hybrid contribution 0.494 -0.745 -1.029 1.363 sum -24.949 11.480 0.962 27.480 Atomic orbital electron populations 1.23880 0.93781 1.03191 0.93143 1.23243 0.96818 0.97842 1.06034 1.21460 0.91194 0.98176 0.88797 1.47450 1.13431 1.44840 1.12970 1.23357 0.96049 1.01584 0.82638 1.62011 0.98738 1.07044 1.46952 1.23361 0.98029 0.93909 0.95303 1.22486 0.91547 0.99273 1.01048 1.22170 0.91069 0.95819 1.03314 0.84583 1.20443 0.84690 0.86376 0.78106 1.90756 1.84112 1.18108 1.51210 1.45666 1.11737 1.16150 1.63411 1.21649 0.87374 0.99191 0.97752 1.23704 0.87170 0.95091 1.04074 1.74302 0.98923 1.16826 1.26018 1.74142 1.24019 1.16823 1.02354 1.25843 0.82697 0.97357 0.97827 1.16831 0.92339 0.91188 0.85669 1.21996 0.98022 0.98663 0.99675 1.21722 0.98179 0.97235 1.00270 1.21159 1.02628 1.35241 0.96548 0.93315 1.25352 1.00399 0.95962 0.95051 1.69847 1.37935 1.42613 1.03575 0.85790 0.80667 0.78423 0.77763 1.20775 1.20023 1.20562 0.87470 0.87266 0.87453 0.86424 0.87459 0.93218 0.87741 0.85224 0.89196 0.74368 0.93033 0.93500 0.87374 0.90063 0.90922 0.92749 0.90306 0.96965 0.96227 0.90096 0.94423 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.44 10.45 67.77 0.71 -1.73 16 2 C -0.22 -6.39 7.46 25.64 0.19 -6.20 16 3 C 0.12 3.65 4.38 85.63 0.37 4.02 16 4 N -0.49 -18.92 2.70 -518.92 -1.40 -20.32 16 5 C 0.32 12.57 6.72 260.11 1.75 14.31 16 6 N -0.42 -12.13 5.35 -693.18 -3.71 -15.84 16 7 C 0.02 0.40 5.91 86.45 0.51 0.91 16 8 C -0.11 -0.96 6.44 31.48 0.20 -0.76 16 9 C -0.10 -1.38 3.46 -10.27 -0.04 -1.42 16 10 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 11 C 0.52 7.51 6.78 87.66 0.59 8.10 16 12 O -0.56 -12.89 12.88 -3.03 -0.04 -12.93 16 13 N -0.72 -4.91 5.66 -484.53 -2.74 -7.65 16 14 C 0.08 0.55 10.70 127.77 1.37 1.92 16 15 C 0.03 0.67 5.32 86.71 0.46 1.13 16 16 N -0.32 -15.66 12.23 -58.01 -0.71 -16.37 16 17 N -0.34 -18.07 11.01 -49.54 -0.55 -18.61 16 18 C 0.23 11.21 6.33 137.64 0.87 12.09 16 19 C 0.14 7.12 0.51 -53.67 -0.03 7.09 16 20 C -0.13 -5.82 6.80 71.98 0.49 -5.33 16 21 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 22 C -0.52 -29.58 7.91 25.60 0.20 -29.38 16 23 H 0.05 3.01 6.96 -2.91 -0.02 2.99 16 24 C 0.03 1.75 5.12 84.65 0.43 2.18 16 25 N -0.90 -48.52 9.40 21.45 0.20 -48.32 16 26 Si 0.95 45.29 29.54 68.60 2.03 47.31 16 27 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 28 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 29 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 30 H 0.11 2.55 8.06 -2.91 -0.02 2.53 16 31 H 0.11 2.23 6.54 -2.91 -0.02 2.21 16 32 H 0.11 3.68 5.46 -2.91 -0.02 3.67 16 33 H 0.12 2.65 4.68 -2.39 -0.01 2.64 16 34 H 0.11 3.17 5.15 -2.39 -0.01 3.16 16 35 H 0.05 1.04 5.02 -2.39 -0.01 1.03 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.09 0.63 7.84 -2.39 -0.02 0.61 16 39 H 0.42 0.01 8.82 -92.70 -0.82 -0.80 16 40 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 41 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.08 2.19 2.28 -2.39 -0.01 2.18 16 44 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.05 2.13 4.43 -2.38 -0.01 2.12 16 46 H 0.08 4.00 5.88 -2.39 -0.01 3.98 16 47 H 0.01 0.55 7.74 -2.39 -0.02 0.53 16 48 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.08 3.99 6.26 -2.39 -0.01 3.97 16 50 H 0.04 1.45 5.75 -2.39 -0.01 1.44 16 51 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -77.68 376.77 1.92 -75.76 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.17 Total: 14.83 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 8.67 Total: 2.15 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -8.91 Total: -127.12 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.04 Total: -12.93 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -77.68 1.92 -75.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520447660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.290 kcal (2) G-P(sol) polarization free energy of solvation -77.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds