Wall clock time and date at job start Wed Apr 1 2020 05:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99563 * 2 1 4 4 C 1.53005 * 109.47257 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.46934 * 64.99834 * 4 3 2 6 6 C 1.46903 * 111.00096 * 66.04890 * 5 4 3 7 7 C 1.50695 * 109.47386 * 199.18928 * 6 5 4 8 8 H 1.08009 * 120.00124 * 4.97583 * 7 6 5 9 9 C 1.37873 * 120.00217 * 184.97382 * 7 6 5 10 10 N 1.31510 * 120.00006 * 5.19765 * 9 7 6 11 11 Si 1.86802 * 120.00293 * 185.20067 * 9 7 6 12 12 H 1.48499 * 109.47216 * 94.98326 * 11 9 7 13 13 H 1.48495 * 109.47279 * 214.98848 * 11 9 7 14 14 H 1.48504 * 109.46785 * 334.98546 * 11 9 7 15 15 C 1.38585 * 111.00041 * 190.00528 * 5 4 3 16 16 N 1.31226 * 126.46950 * 261.77386 * 15 5 4 17 17 N 1.28528 * 109.85726 * 179.69168 * 16 15 5 18 18 C 1.30292 * 110.05194 * 0.45392 * 17 16 15 19 19 C 1.50707 * 126.34422 * 179.82178 * 18 17 16 20 20 C 1.52997 * 109.46821 * 3.77186 * 19 18 17 21 21 C 1.53001 * 109.46941 * 243.77210 * 19 18 17 22 22 C 1.47195 * 109.47039 * 123.77232 * 19 18 17 23 23 N 7.29023 * 155.04043 * 133.94407 * 2 1 3 24 24 N 1.36446 * 126.47473 * 81.72927 * 15 5 4 25 25 C 1.46497 * 127.13624 * 0.05996 * 24 15 5 26 26 C 1.53003 * 109.46972 * 84.06888 * 25 24 15 27 27 C 1.53004 * 117.49226 * 245.25032 * 26 25 24 28 28 C 1.52997 * 60.00153 * 252.51398 * 27 26 25 29 29 H 1.09001 * 109.47662 * 299.99852 * 1 2 3 30 30 H 1.09001 * 109.47560 * 60.00429 * 1 2 3 31 31 H 1.09008 * 109.46971 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47107 * 59.99997 * 3 2 1 33 33 H 1.09001 * 109.47301 * 300.00088 * 3 2 1 34 34 H 1.09000 * 109.46850 * 305.00150 * 4 3 2 35 35 H 1.08994 * 109.47461 * 184.99986 * 4 3 2 36 36 H 1.08999 * 109.46568 * 319.19000 * 6 5 4 37 37 H 1.09006 * 109.46768 * 79.19012 * 6 5 4 38 38 H 0.96996 * 120.00176 * 180.02562 * 10 9 7 39 39 H 1.09010 * 109.46777 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47688 * 299.99821 * 20 19 18 41 41 H 1.08996 * 109.47504 * 60.00624 * 20 19 18 42 42 H 1.09003 * 109.47320 * 294.36615 * 21 19 18 43 43 H 1.08998 * 109.47223 * 54.36462 * 21 19 18 44 44 H 1.09004 * 109.46979 * 174.36634 * 21 19 18 45 45 H 1.09005 * 109.46987 * 204.06438 * 25 24 15 46 46 H 1.09000 * 109.47312 * 324.06358 * 25 24 15 47 47 H 1.08986 * 115.55284 * 30.96002 * 26 25 24 48 48 H 1.09001 * 117.50202 * 0.02562 * 27 26 25 49 49 H 1.09007 * 117.49551 * 145.02152 * 27 26 25 50 50 H 1.09000 * 117.49959 * 252.51852 * 28 27 26 51 51 H 1.08997 * 117.49654 * 107.49362 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 -0.0006 5 7 3.9768 0.5630 -1.2561 6 6 3.6948 1.4358 -2.4036 7 6 3.7097 0.6203 -3.6707 8 1 3.8287 -0.4521 -3.6214 9 6 3.5715 1.2430 -4.8930 10 7 3.5293 2.5557 -4.9612 11 14 3.4439 0.2222 -6.4523 12 1 2.0134 0.0162 -6.7935 13 1 4.1211 0.9333 -7.5662 14 1 4.0960 -1.0945 -6.2366 15 6 5.3218 0.2337 -1.2012 16 7 6.3171 0.9350 -1.6907 17 7 7.4301 0.3369 -1.4551 18 6 7.2119 -0.7769 -0.8152 19 6 8.2552 -1.7649 -0.3606 20 6 9.6481 -1.2198 -0.6822 21 6 8.0481 -3.0956 -1.0866 22 6 8.1333 -1.9739 1.0914 23 7 8.0383 -2.1348 2.2150 24 7 5.8614 -0.8804 -0.6273 25 6 5.1429 -1.9631 0.0492 26 6 4.6443 -2.9707 -0.9886 27 6 3.1310 -3.1173 -1.1605 28 6 3.9334 -4.2233 -0.4723 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6884 1.8464 0.8900 33 1 1.6884 1.8465 -0.8900 34 1 3.8514 0.5684 0.8409 35 1 3.9784 2.1767 0.0889 36 1 2.7142 1.8949 -2.2785 37 1 4.4555 2.2142 -2.4635 38 1 3.4317 2.9938 -5.8211 39 1 10.4028 -1.9346 -0.3538 40 1 9.7385 -1.0650 -1.7573 41 1 9.7957 -0.2718 -0.1649 42 1 7.0979 -3.5329 -0.7798 43 1 8.0386 -2.9246 -2.1630 44 1 8.8602 -3.7775 -0.8341 45 1 5.8136 -2.4631 0.7480 46 1 4.2930 -1.5508 0.5931 47 1 5.2646 -3.0749 -1.8786 48 1 2.4908 -2.4956 -0.5346 49 1 2.7556 -3.3178 -2.1641 50 1 4.0859 -5.1515 -1.0230 51 1 3.8210 -4.3295 0.6067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649293324.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:03 Heat of formation + Delta-G solvation = 105.232350 kcal Electronic energy + Delta-G solvation = -32939.559626 eV Core-core repulsion = 28877.568814 eV Total energy + Delta-G solvation = -4061.990812 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.58111 -38.22818 -37.88802 -37.39860 -36.27662 -34.82418 -33.84958 -32.53391 -30.11630 -28.37060 -27.72092 -27.33366 -26.69062 -25.68602 -24.11105 -22.98809 -22.20976 -22.04517 -21.34076 -20.42797 -19.71636 -17.90164 -16.92879 -16.59723 -16.20197 -15.75478 -15.68650 -15.20800 -15.02052 -14.91426 -14.54572 -14.42369 -14.16572 -14.08793 -13.66904 -13.39716 -13.17145 -12.98232 -12.88081 -12.52479 -12.19926 -12.18718 -11.96015 -11.86236 -11.80889 -11.67550 -11.57669 -11.40746 -11.38351 -11.27790 -10.96368 -10.85642 -10.66925 -10.51781 -10.36436 -10.07608 -9.98284 -9.86180 -9.61612 -9.36977 -9.26173 -8.85866 -8.37723 -7.49874 -5.99096 -3.98011 2.09038 2.42152 2.50494 2.72439 3.33052 3.35043 3.40141 3.43431 3.69633 3.85726 4.04069 4.23221 4.34043 4.53614 4.62193 4.66981 4.74332 4.83604 5.07759 5.18129 5.23793 5.26975 5.35858 5.39819 5.41288 5.48080 5.50155 5.54832 5.58132 5.61411 5.62458 5.68430 5.69611 5.80785 5.88453 5.90749 5.93700 5.94359 6.11510 6.14876 6.22449 6.26292 6.39538 6.46166 6.78671 7.13640 7.29678 7.40198 7.47272 7.64967 8.02545 8.06938 8.39038 9.03662 9.35398 9.63687 11.11853 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008402 B = 0.004932 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.593766 B = 5675.897303 C = 6851.400925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.067 3.933 4 C 0.064 3.936 5 N -0.449 5.449 6 C 0.198 3.802 7 C -0.496 4.496 8 H 0.058 0.942 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.408 3.592 16 N -0.300 5.300 17 N -0.262 5.262 18 C 0.142 3.858 19 C 0.138 3.862 20 C -0.129 4.129 21 C -0.148 4.148 22 C 0.214 3.786 23 N -0.422 5.422 24 N -0.470 5.470 25 C 0.148 3.852 26 C -0.170 4.170 27 C -0.147 4.147 28 C -0.181 4.181 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.037 0.963 37 H 0.031 0.969 38 H 0.261 0.739 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.109 0.891 48 H 0.107 0.893 49 H 0.095 0.905 50 H 0.094 0.906 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.913 -10.811 11.069 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.010 4.010 4 C -0.064 4.064 5 N -0.174 5.174 6 C 0.075 3.925 7 C -0.534 4.534 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.201 1.201 15 C 0.053 3.947 16 N -0.144 5.144 17 N -0.103 5.103 18 C -0.126 4.126 19 C 0.131 3.869 20 C -0.187 4.187 21 C -0.207 4.207 22 C -0.105 4.105 23 N -0.097 5.097 24 N -0.164 5.164 25 C 0.025 3.975 26 C -0.189 4.189 27 C -0.184 4.184 28 C -0.219 4.219 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.128 0.872 48 H 0.126 0.874 49 H 0.113 0.887 50 H 0.112 0.888 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.288 -10.344 11.897 15.930 hybrid contribution -0.785 -0.570 -0.718 1.207 sum 1.503 -10.914 11.179 15.695 Atomic orbital electron populations 1.22663 0.81981 1.02178 0.99531 1.87923 1.18667 1.27377 1.95268 1.22621 0.92562 0.85274 1.00512 1.22106 0.94368 0.98264 0.91652 1.58979 1.06445 1.46936 1.05060 1.20003 0.96994 0.91003 0.84525 1.20911 1.49189 0.93662 0.89665 0.92355 1.24856 0.95572 0.94805 0.98786 1.69944 1.50479 1.07686 1.25263 0.86536 0.77850 0.80239 0.83067 1.20860 1.21287 1.20085 1.22585 0.92476 0.85183 0.94447 1.74829 0.93730 1.23606 1.22211 1.73977 1.20210 1.03248 1.12836 1.23585 0.82293 0.99675 1.07054 1.16316 0.94729 0.94358 0.81478 1.21753 0.90434 1.01712 1.04821 1.22097 1.03495 0.93224 1.01877 1.29118 0.93353 0.93257 0.94739 1.81334 1.07994 1.08473 1.11899 1.46137 1.06583 1.18504 1.45203 1.21334 0.96763 0.85988 0.93430 1.22453 0.97648 0.97894 1.00898 1.22994 0.92838 1.00196 1.02346 1.22982 1.05401 0.92926 1.00569 0.94995 0.93943 0.90141 0.93433 0.91476 0.91557 0.92512 0.94517 0.95058 0.92968 0.91145 0.89089 0.90814 0.91150 0.89512 0.90401 0.90117 0.88489 0.87244 0.87426 0.88699 0.88770 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.37 -5.79 10.65 -35.23 -0.38 -6.17 16 3 C 0.07 1.03 6.02 37.16 0.22 1.25 16 4 C 0.06 1.09 5.28 -3.82 -0.02 1.07 16 5 N -0.45 -9.24 4.41 -175.88 -0.78 -10.02 16 6 C 0.20 4.93 4.46 -4.98 -0.02 4.90 16 7 C -0.50 -13.65 8.94 -34.44 -0.31 -13.96 16 8 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 9 C 0.06 1.73 5.45 -17.82 -0.10 1.63 16 10 N -0.89 -26.24 13.28 55.43 0.74 -25.50 16 11 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.41 8.48 6.41 -318.87 -2.04 6.43 16 16 N -0.30 -6.93 11.09 30.32 0.34 -6.59 16 17 N -0.26 -5.25 11.50 32.99 0.38 -4.87 16 18 C 0.14 2.33 6.31 -154.01 -0.97 1.35 16 19 C 0.14 1.64 0.73 -158.45 -0.12 1.52 16 20 C -0.13 -1.29 7.94 37.16 0.29 -0.99 16 21 C -0.15 -1.40 8.31 37.16 0.31 -1.09 16 22 C 0.21 2.74 11.80 -20.66 -0.24 2.50 16 23 N -0.42 -6.06 18.56 42.27 0.78 -5.28 16 24 N -0.47 -8.01 2.81 -114.08 -0.32 -8.33 16 25 C 0.15 2.08 5.57 -4.04 -0.02 2.05 16 26 C -0.17 -2.27 4.84 -90.61 -0.44 -2.71 16 27 C -0.15 -1.99 10.18 -26.73 -0.27 -2.26 16 28 C -0.18 -1.94 10.25 -26.73 -0.27 -2.22 16 29 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.15 6.08 -51.93 -0.32 0.83 16 34 H 0.07 1.04 7.22 -51.93 -0.37 0.67 16 35 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 36 H 0.04 0.93 5.82 -51.93 -0.30 0.63 16 37 H 0.03 0.88 7.28 -51.93 -0.38 0.50 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 39 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.69 5.41 -51.93 -0.28 0.40 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 1.02 5.74 -51.93 -0.30 0.72 16 46 H 0.10 1.39 7.05 -51.93 -0.37 1.03 16 47 H 0.11 1.59 7.76 -51.94 -0.40 1.19 16 48 H 0.11 1.54 8.04 -51.93 -0.42 1.13 16 49 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 50 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 419.01 15.07 6.31 6.31 Total: -1.00 -33.04 419.01 -9.01 -42.05 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -8.18 Total: 0.58 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -2.89 Total: 0.99 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 1.14 Total: -60.59 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.38 Total: -6.17 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.04 -9.01 -42.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649293324.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.278 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds