Wall clock time and date at job start Wed Apr 1 2020 05:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99563 * 2 1 4 4 C 1.53005 * 109.47257 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.46934 * 64.99834 * 4 3 2 6 6 C 1.46903 * 111.00096 * 66.04890 * 5 4 3 7 7 C 1.50695 * 109.47386 * 199.18928 * 6 5 4 8 8 H 1.08009 * 120.00124 * 4.97583 * 7 6 5 9 9 C 1.37873 * 120.00217 * 184.97382 * 7 6 5 10 10 N 1.31510 * 120.00006 * 5.19765 * 9 7 6 11 11 Si 1.86802 * 120.00293 * 185.20067 * 9 7 6 12 12 H 1.48499 * 109.47216 * 94.98326 * 11 9 7 13 13 H 1.48495 * 109.47279 * 214.98848 * 11 9 7 14 14 H 1.48504 * 109.46785 * 334.98546 * 11 9 7 15 15 C 1.38585 * 111.00041 * 190.00528 * 5 4 3 16 16 N 1.31226 * 126.46950 * 261.77386 * 15 5 4 17 17 N 1.28528 * 109.85726 * 179.69168 * 16 15 5 18 18 C 1.30292 * 110.05194 * 0.45392 * 17 16 15 19 19 C 1.50707 * 126.34422 * 179.82178 * 18 17 16 20 20 C 1.52997 * 109.46821 * 3.77186 * 19 18 17 21 21 C 1.53001 * 109.46941 * 243.77210 * 19 18 17 22 22 C 1.47195 * 109.47039 * 123.77232 * 19 18 17 23 23 N 7.29023 * 155.04043 * 133.94407 * 2 1 3 24 24 N 1.36446 * 126.47473 * 81.72927 * 15 5 4 25 25 C 1.46497 * 127.13624 * 0.05996 * 24 15 5 26 26 C 1.53003 * 109.46972 * 84.06888 * 25 24 15 27 27 C 1.53004 * 117.49226 * 245.25032 * 26 25 24 28 28 C 1.52997 * 60.00153 * 252.51398 * 27 26 25 29 29 H 1.09001 * 109.47662 * 299.99852 * 1 2 3 30 30 H 1.09001 * 109.47560 * 60.00429 * 1 2 3 31 31 H 1.09008 * 109.46971 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47107 * 59.99997 * 3 2 1 33 33 H 1.09001 * 109.47301 * 300.00088 * 3 2 1 34 34 H 1.09000 * 109.46850 * 305.00150 * 4 3 2 35 35 H 1.08994 * 109.47461 * 184.99986 * 4 3 2 36 36 H 1.08999 * 109.46568 * 319.19000 * 6 5 4 37 37 H 1.09006 * 109.46768 * 79.19012 * 6 5 4 38 38 H 0.96996 * 120.00176 * 180.02562 * 10 9 7 39 39 H 1.09010 * 109.46777 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47688 * 299.99821 * 20 19 18 41 41 H 1.08996 * 109.47504 * 60.00624 * 20 19 18 42 42 H 1.09003 * 109.47320 * 294.36615 * 21 19 18 43 43 H 1.08998 * 109.47223 * 54.36462 * 21 19 18 44 44 H 1.09004 * 109.46979 * 174.36634 * 21 19 18 45 45 H 1.09005 * 109.46987 * 204.06438 * 25 24 15 46 46 H 1.09000 * 109.47312 * 324.06358 * 25 24 15 47 47 H 1.08986 * 115.55284 * 30.96002 * 26 25 24 48 48 H 1.09001 * 117.50202 * 0.02562 * 27 26 25 49 49 H 1.09007 * 117.49551 * 145.02152 * 27 26 25 50 50 H 1.09000 * 117.49959 * 252.51852 * 28 27 26 51 51 H 1.08997 * 117.49654 * 107.49362 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 -0.0006 5 7 3.9768 0.5630 -1.2561 6 6 3.6948 1.4358 -2.4036 7 6 3.7097 0.6203 -3.6707 8 1 3.8287 -0.4521 -3.6214 9 6 3.5715 1.2430 -4.8930 10 7 3.5293 2.5557 -4.9612 11 14 3.4439 0.2222 -6.4523 12 1 2.0134 0.0162 -6.7935 13 1 4.1211 0.9333 -7.5662 14 1 4.0960 -1.0945 -6.2366 15 6 5.3218 0.2337 -1.2012 16 7 6.3171 0.9350 -1.6907 17 7 7.4301 0.3369 -1.4551 18 6 7.2119 -0.7769 -0.8152 19 6 8.2552 -1.7649 -0.3606 20 6 9.6481 -1.2198 -0.6822 21 6 8.0481 -3.0956 -1.0866 22 6 8.1333 -1.9739 1.0914 23 7 8.0383 -2.1348 2.2150 24 7 5.8614 -0.8804 -0.6273 25 6 5.1429 -1.9631 0.0492 26 6 4.6443 -2.9707 -0.9886 27 6 3.1310 -3.1173 -1.1605 28 6 3.9334 -4.2233 -0.4723 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6884 1.8464 0.8900 33 1 1.6884 1.8465 -0.8900 34 1 3.8514 0.5684 0.8409 35 1 3.9784 2.1767 0.0889 36 1 2.7142 1.8949 -2.2785 37 1 4.4555 2.2142 -2.4635 38 1 3.4317 2.9938 -5.8211 39 1 10.4028 -1.9346 -0.3538 40 1 9.7385 -1.0650 -1.7573 41 1 9.7957 -0.2718 -0.1649 42 1 7.0979 -3.5329 -0.7798 43 1 8.0386 -2.9246 -2.1630 44 1 8.8602 -3.7775 -0.8341 45 1 5.8136 -2.4631 0.7480 46 1 4.2930 -1.5508 0.5931 47 1 5.2646 -3.0749 -1.8786 48 1 2.4908 -2.4956 -0.5346 49 1 2.7556 -3.3178 -2.1641 50 1 4.0859 -5.1515 -1.0230 51 1 3.8210 -4.3295 0.6067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649293324.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:01 Heat of formation + Delta-G solvation = 86.539182 kcal Electronic energy + Delta-G solvation = -32940.370222 eV Core-core repulsion = 28877.568814 eV Total energy + Delta-G solvation = -4062.801408 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.03975 -39.54400 -39.02308 -38.45591 -37.68692 -35.89911 -35.21609 -34.58878 -31.49059 -30.02395 -28.99386 -28.31543 -28.12296 -26.87282 -25.26450 -24.81478 -23.41213 -23.18923 -22.59718 -21.61402 -21.25033 -19.15356 -18.59735 -18.08706 -17.49188 -17.23740 -17.11403 -16.56100 -16.24713 -16.09391 -16.00143 -15.72946 -15.25848 -15.22779 -14.95623 -14.71223 -14.53949 -14.21590 -13.93597 -13.88058 -13.56185 -13.38026 -13.09505 -13.02830 -12.96216 -12.84786 -12.74334 -12.65589 -12.62952 -12.53002 -12.40368 -12.31789 -12.15674 -12.10301 -11.81990 -11.54321 -11.47798 -11.30909 -10.95146 -10.90105 -10.65570 -10.43666 -10.38553 -9.16568 -8.15686 -6.21398 0.72191 1.17987 1.37788 1.39386 1.45578 1.49400 1.51952 1.89065 2.40190 2.59826 2.77640 2.88939 2.96176 3.15162 3.18210 3.55755 3.68570 3.79412 3.80279 3.91406 4.02157 4.09351 4.14402 4.17584 4.30027 4.41292 4.43839 4.50456 4.56175 4.60892 4.66063 4.73643 4.76074 4.82479 4.84384 4.86241 4.91470 4.92809 4.95447 5.07473 5.12652 5.18205 5.25529 5.34548 5.35056 5.38978 5.60683 5.67937 5.96774 6.25086 6.27559 6.34880 6.46107 6.86464 7.43712 7.83916 8.95255 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008402 B = 0.004932 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.593766 B = 5675.897303 C = 6851.400925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.392 6.392 3 C 0.074 3.926 4 C 0.061 3.939 5 N -0.444 5.444 6 C 0.219 3.781 7 C -0.501 4.501 8 H 0.047 0.953 9 C 0.011 3.989 10 N -0.927 5.927 11 Si 0.957 3.043 12 H -0.269 1.269 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.392 3.608 16 N -0.353 5.353 17 N -0.295 5.295 18 C 0.165 3.835 19 C 0.140 3.860 20 C -0.128 4.128 21 C -0.146 4.146 22 C 0.230 3.770 23 N -0.443 5.443 24 N -0.465 5.465 25 C 0.150 3.850 26 C -0.182 4.182 27 C -0.166 4.166 28 C -0.140 4.140 29 H 0.055 0.945 30 H 0.031 0.969 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.030 0.970 37 H -0.008 1.008 38 H 0.262 0.738 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.081 0.919 50 H 0.113 0.887 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 -13.959 12.276 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.311 6.311 3 C -0.003 4.003 4 C -0.066 4.066 5 N -0.169 5.169 6 C 0.094 3.906 7 C -0.540 4.540 8 H 0.065 0.935 9 C -0.187 4.187 10 N -0.568 5.568 11 Si 0.782 3.218 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.035 3.965 16 N -0.196 5.196 17 N -0.134 5.134 18 C -0.105 4.105 19 C 0.133 3.867 20 C -0.187 4.187 21 C -0.205 4.205 22 C -0.088 4.088 23 N -0.118 5.118 24 N -0.159 5.159 25 C 0.028 3.972 26 C -0.201 4.201 27 C -0.203 4.203 28 C -0.178 4.178 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.010 0.990 38 H 0.071 0.929 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.133 0.867 45 H 0.118 0.882 46 H 0.112 0.888 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.099 0.901 50 H 0.132 0.868 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.556 -13.512 13.128 19.012 hybrid contribution -0.842 0.377 -1.006 1.365 sum 1.714 -13.135 12.121 17.955 Atomic orbital electron populations 1.22843 0.80192 1.03519 1.00155 1.87886 1.20629 1.27210 1.95411 1.22515 0.91215 0.85568 1.00958 1.22249 0.95783 0.98042 0.90506 1.58894 1.06834 1.45988 1.05178 1.19505 0.95141 0.90257 0.85702 1.21092 1.48677 0.93192 0.91025 0.93496 1.25652 0.95312 0.95840 1.01940 1.70062 1.51524 1.09184 1.26041 0.85566 0.78411 0.78615 0.79179 1.19452 1.21056 1.19830 1.22563 0.92132 0.86359 0.95494 1.74715 0.95139 1.25756 1.23998 1.73870 1.19539 1.04962 1.15078 1.24496 0.82857 0.98890 1.04235 1.16649 0.94139 0.94610 0.81254 1.21830 0.90063 1.02119 1.04669 1.22161 1.05038 0.92047 1.01214 1.29077 0.92681 0.92533 0.94529 1.81366 1.08646 1.09341 1.12467 1.46287 1.06818 1.18124 1.44643 1.21524 0.96828 0.85209 0.93664 1.22383 0.97201 0.99801 1.00755 1.22917 0.92806 1.02497 1.02079 1.23073 1.00978 0.92105 1.01606 0.92626 0.95000 0.88508 0.89924 0.93933 0.89911 0.93102 0.95260 0.98985 0.92863 0.87415 0.89313 0.92142 0.91194 0.89912 0.86699 0.88242 0.88806 0.88491 0.88469 0.90054 0.86832 0.87175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.39 -11.95 10.65 -148.98 -1.59 -13.53 16 3 C 0.07 2.28 6.02 71.98 0.43 2.71 16 4 C 0.06 2.14 5.28 86.31 0.46 2.59 16 5 N -0.44 -19.02 4.41 -710.36 -3.13 -22.16 16 6 C 0.22 11.50 4.46 85.55 0.38 11.88 16 7 C -0.50 -28.66 8.94 25.60 0.23 -28.43 16 8 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 9 C 0.01 0.63 5.45 84.65 0.46 1.09 16 10 N -0.93 -56.26 13.28 21.45 0.28 -55.97 16 11 Si 0.96 45.56 29.54 68.60 2.03 47.58 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 14 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 15 C 0.39 16.82 6.41 260.11 1.67 18.49 16 16 N -0.35 -17.10 11.09 -58.00 -0.64 -17.74 16 17 N -0.30 -12.20 11.50 -49.53 -0.57 -12.77 16 18 C 0.16 5.37 6.31 137.64 0.87 6.24 16 19 C 0.14 3.05 0.73 -54.73 -0.04 3.01 16 20 C -0.13 -2.31 7.94 71.98 0.57 -1.74 16 21 C -0.15 -2.32 8.31 71.98 0.60 -1.72 16 22 C 0.23 5.34 11.80 89.41 1.05 6.39 16 23 N -0.44 -11.68 18.56 20.04 0.37 -11.31 16 24 N -0.46 -15.85 2.81 -514.83 -1.45 -17.29 16 25 C 0.15 4.00 5.57 86.38 0.48 4.48 16 26 C -0.18 -4.62 4.84 -10.79 -0.05 -4.67 16 27 C -0.17 -4.34 10.18 30.59 0.31 -4.03 16 28 C -0.14 -2.57 10.25 30.59 0.31 -2.26 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.04 1.51 6.08 -2.39 -0.01 1.50 16 34 H 0.08 2.59 7.22 -2.39 -0.02 2.57 16 35 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 36 H 0.03 1.58 5.82 -2.39 -0.01 1.56 16 37 H -0.01 -0.47 7.28 -2.38 -0.02 -0.49 16 38 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.07 1.14 5.41 -2.39 -0.01 1.13 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.10 2.27 5.74 -2.38 -0.01 2.26 16 46 H 0.09 2.59 7.05 -2.39 -0.02 2.57 16 47 H 0.10 2.73 7.76 -2.39 -0.02 2.71 16 48 H 0.10 2.74 8.04 -2.39 -0.02 2.72 16 49 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 50 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -75.69 419.01 5.22 -70.47 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.93 Total: 16.77 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 8.98 Total: 15.95 kcal Atomic # 7 Polarization: -132.11 SS G_CDS: -5.13 Total: -137.24 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -1.59 Total: -13.53 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.69 5.22 -70.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649293324.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.013 kcal (2) G-P(sol) polarization free energy of solvation -75.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds