Wall clock time and date at job start Wed Apr 1 2020 05:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 120.00358 * 2 1 4 4 C 1.52990 * 109.47270 * 124.99426 * 3 2 1 5 5 N 1.46507 * 109.46992 * 180.02562 * 4 3 2 6 6 C 1.34814 * 126.59477 * 125.00023 * 5 4 3 7 7 C 1.36594 * 106.83842 * 180.02562 * 6 5 4 8 8 C 1.47521 * 125.77251 * 179.97438 * 7 6 5 9 9 O 1.21599 * 119.99547 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00369 * 179.97438 * 8 7 6 11 11 C 1.46506 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.53009 * 109.46955 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47023 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47252 * 174.95171 * 13 12 11 15 15 H 1.09003 * 109.86657 * 306.25281 * 14 13 12 16 16 C 1.54321 * 109.88651 * 67.42600 * 14 13 12 17 17 C 1.55151 * 102.94009 * 141.61225 * 16 14 13 18 18 C 1.54910 * 101.58432 * 324.49706 * 17 16 14 19 19 N 1.47015 * 109.88280 * 185.23848 * 14 13 12 20 20 C 1.36946 * 125.64962 * 61.60165 * 19 14 13 21 21 H 1.07998 * 119.99893 * 14.68054 * 20 19 14 22 22 C 1.38805 * 120.00125 * 194.67763 * 20 19 14 23 23 N 1.31623 * 120.00086 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00197 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47545 * 90.00017 * 24 22 20 26 26 H 1.48508 * 109.47138 * 210.00291 * 24 22 20 27 27 H 1.48499 * 109.46740 * 329.99765 * 24 22 20 28 28 N 1.34400 * 108.45877 * 0.23583 * 7 6 5 29 29 N 1.28759 * 109.52200 * 359.59421 * 28 7 6 30 30 H 1.07994 * 120.00032 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.99727 * 0.02562 * 1 2 3 32 32 H 1.08004 * 120.00070 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.46324 * 4.98840 * 3 2 1 34 34 H 1.09004 * 109.46701 * 244.99541 * 3 2 1 35 35 H 1.08993 * 109.47389 * 60.00379 * 4 3 2 36 36 H 1.09004 * 109.47352 * 299.99716 * 4 3 2 37 37 H 1.08001 * 126.58215 * 0.02562 * 6 5 4 38 38 H 0.97004 * 120.00270 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.47159 * 60.00264 * 11 10 8 40 40 H 1.08996 * 109.46839 * 299.99633 * 11 10 8 41 41 H 1.08998 * 109.46711 * 299.99851 * 12 11 10 42 42 H 1.09004 * 109.46866 * 60.00213 * 12 11 10 43 43 H 1.09004 * 109.46867 * 294.94795 * 13 12 11 44 44 H 1.09004 * 109.47147 * 54.94657 * 13 12 11 45 45 H 1.08999 * 110.72076 * 259.98271 * 16 14 13 46 46 H 1.09004 * 110.71559 * 23.24916 * 16 14 13 47 47 H 1.09007 * 111.00130 * 206.42754 * 17 16 14 48 48 H 1.08996 * 111.04092 * 82.59317 * 17 16 14 49 49 H 1.08998 * 110.36674 * 278.17303 * 18 17 16 50 50 H 1.09004 * 110.36233 * 155.84780 * 18 17 16 51 51 H 0.96998 * 120.00044 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7671 2.6021 1.1819 6 6 3.8481 3.4831 2.1992 7 6 4.6268 4.5180 1.7654 8 6 4.9866 5.7144 2.5500 9 8 4.5795 5.8394 3.6890 10 7 5.7664 6.6686 2.0045 11 6 6.1232 7.8570 2.7836 12 6 7.0089 8.7742 1.9379 13 6 7.3820 10.0149 2.7517 14 6 8.3680 10.8706 1.9539 15 1 9.2197 10.2642 1.6457 16 6 7.6654 11.4631 0.7143 17 6 8.2660 12.8908 0.6238 18 6 8.4253 13.2568 2.1206 19 7 8.8291 11.9993 2.7755 20 6 9.5188 11.8991 3.9544 21 1 9.9730 10.9607 4.2362 22 6 9.6340 13.0036 4.7871 23 7 9.0809 14.1475 4.4434 24 14 10.5754 12.8672 6.3948 25 1 12.0028 13.2042 6.1628 26 1 9.9992 13.8097 7.3873 27 1 10.4722 11.4792 6.9124 28 7 5.0052 4.2649 0.5008 29 7 4.5180 3.1342 0.1241 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5399 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1316 0.0894 34 1 2.6215 1.4025 -0.9314 35 1 3.7399 0.5067 1.0922 36 1 2.4772 1.2358 2.1130 37 1 3.3859 3.3886 3.1707 38 1 6.0915 6.5687 1.0961 39 1 6.6650 7.5547 3.6798 40 1 5.2162 8.3897 3.0695 41 1 7.9158 8.2412 1.6523 42 1 6.4675 9.0765 1.0414 43 1 6.4837 10.5957 2.9611 44 1 7.8436 9.7085 3.6904 45 1 7.9064 10.8859 -0.1783 46 1 6.5870 11.5073 0.8667 47 1 7.5773 13.5735 0.1259 48 1 9.2323 12.8776 0.1198 49 1 7.4777 13.6094 2.5278 50 1 9.1985 14.0149 2.2455 51 1 9.1611 14.9192 5.0254 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663109923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:59 Heat of formation + Delta-G solvation = 87.883621 kcal Electronic energy + Delta-G solvation = -28883.576956 eV Core-core repulsion = 24820.833846 eV Total energy + Delta-G solvation = -4062.743109 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.55647 -39.44865 -37.77297 -36.96808 -35.48838 -34.28615 -32.89699 -32.12673 -31.34662 -29.94592 -29.30543 -27.97488 -25.25070 -24.94444 -24.30450 -23.06575 -22.23629 -21.42874 -20.60393 -20.44436 -20.06415 -19.09888 -18.28163 -16.77815 -16.58550 -16.57825 -16.08276 -15.88681 -15.58513 -15.04316 -14.99548 -14.74864 -14.39063 -14.09631 -13.98115 -13.69708 -13.62038 -13.28682 -12.80486 -12.53223 -12.27614 -12.20583 -11.97867 -11.86943 -11.82338 -11.64213 -11.59196 -11.37776 -10.97222 -10.80521 -10.75844 -10.69011 -10.48325 -10.23581 -10.07851 -10.02512 -9.92296 -9.70093 -9.64650 -9.56787 -9.54046 -9.04389 -8.50774 -6.69836 -5.67979 -3.02724 0.76513 1.42604 1.46171 1.70934 3.06152 3.15025 3.43593 3.49272 3.50831 3.78384 3.88752 4.03667 4.24670 4.43171 4.50336 4.54745 4.56153 4.62606 4.81805 5.04481 5.09457 5.23706 5.26537 5.26602 5.41919 5.49350 5.51353 5.67711 5.69648 5.80450 5.89363 5.92799 5.94575 6.03080 6.04490 6.10448 6.20311 6.34621 6.42960 6.43882 6.50962 6.64231 6.77915 6.80276 7.03947 7.25110 7.35548 7.61854 7.65289 7.70539 7.87142 8.08971 8.36718 9.27645 9.89324 10.59005 11.44488 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.001523 C = 0.001454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.393245 B =18384.630803 C =19248.804302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C -0.107 4.107 4 C 0.126 3.874 5 N -0.362 5.362 6 C 0.094 3.906 7 C -0.099 4.099 8 C 0.601 3.399 9 O -0.540 6.540 10 N -0.711 5.711 11 C 0.118 3.882 12 C -0.128 4.128 13 C -0.121 4.121 14 C 0.162 3.838 15 H 0.031 0.969 16 C -0.124 4.124 17 C -0.150 4.150 18 C 0.173 3.827 19 N -0.597 5.597 20 C -0.225 4.225 21 H 0.074 0.926 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.907 3.093 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 N -0.204 5.204 29 N -0.064 5.064 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.205 0.795 38 H 0.408 0.592 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.023 0.977 50 H 0.068 0.932 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.840 -27.407 -10.006 33.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.179 4.179 3 C -0.145 4.145 4 C 0.005 3.995 5 N -0.147 5.147 6 C -0.063 4.063 7 C -0.239 4.239 8 C 0.384 3.616 9 O -0.417 6.417 10 N -0.362 5.362 11 C -0.004 4.004 12 C -0.166 4.166 13 C -0.162 4.162 14 C 0.054 3.946 15 H 0.049 0.951 16 C -0.162 4.162 17 C -0.189 4.189 18 C 0.048 3.952 19 N -0.321 5.321 20 C -0.354 4.354 21 H 0.092 0.908 22 C -0.202 4.202 23 N -0.565 5.565 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.206 1.206 28 N -0.078 5.078 29 N -0.044 5.044 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.222 0.778 38 H 0.243 0.757 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.042 0.958 50 H 0.086 0.914 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.590 -27.375 -10.419 33.181 hybrid contribution 0.115 -0.157 1.504 1.516 sum -15.475 -27.532 -8.915 32.817 Atomic orbital electron populations 1.23980 0.95891 1.02386 0.99272 1.22730 0.96020 0.97600 1.01542 1.21029 0.98000 0.96861 0.98569 1.22053 0.94498 0.81300 1.01646 1.50558 1.35788 1.17485 1.10908 1.23411 0.98233 0.89297 0.95384 1.21542 1.08517 1.00359 0.93463 1.16757 0.78655 0.80991 0.85177 1.90827 1.54903 1.78421 1.17525 1.45899 1.50829 1.20861 1.18581 1.21579 0.99550 0.84463 0.94841 1.21846 0.98967 0.96785 0.99051 1.22024 1.00392 0.94272 0.99472 1.20932 0.93294 0.90005 0.90330 0.95117 1.22589 0.99429 0.96919 0.97282 1.23010 0.99369 0.95932 1.00598 1.21400 0.98986 0.89392 0.85417 1.44546 1.64154 0.99979 1.23388 1.18968 1.24983 0.97148 0.94253 0.90824 1.24887 1.00624 0.96403 0.98304 1.69943 1.48364 1.00820 1.37410 0.86187 0.79220 0.77227 0.83560 1.21679 1.21713 1.20636 1.74647 1.15331 1.07578 1.10221 1.81972 1.09194 1.04798 1.08427 0.87944 0.88348 0.86670 0.90513 0.88991 0.88055 0.87466 0.77820 0.75724 0.91092 0.91186 0.91610 0.91597 0.92238 0.91584 0.92606 0.92033 0.92610 0.92530 0.95849 0.91361 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.53 14.32 29.01 0.42 -0.11 16 2 C -0.16 -0.45 9.52 -36.02 -0.34 -0.79 16 3 C -0.11 -0.39 5.86 -27.89 -0.16 -0.55 16 4 C 0.13 0.41 6.52 -4.04 -0.03 0.38 16 5 N -0.36 -2.63 3.69 -61.06 -0.23 -2.86 16 6 C 0.09 0.76 11.27 -16.84 -0.19 0.57 16 7 C -0.10 -1.12 6.99 -83.55 -0.58 -1.70 16 8 C 0.60 7.98 7.82 -12.48 -0.10 7.89 16 9 O -0.54 -8.63 16.86 5.28 0.09 -8.55 16 10 N -0.71 -8.79 5.55 -61.35 -0.34 -9.14 16 11 C 0.12 1.60 5.68 -4.03 -0.02 1.58 16 12 C -0.13 -1.74 5.10 -26.73 -0.14 -1.88 16 13 C -0.12 -2.18 4.71 -26.73 -0.13 -2.31 16 14 C 0.16 3.28 3.16 -66.96 -0.21 3.07 16 15 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 16 C -0.12 -2.16 5.71 -24.90 -0.14 -2.31 16 17 C -0.15 -2.89 7.08 -24.59 -0.17 -3.06 16 18 C 0.17 4.25 5.41 -2.53 -0.01 4.23 16 19 N -0.60 -15.14 3.13 -162.58 -0.51 -15.65 16 20 C -0.22 -6.25 9.71 -15.06 -0.15 -6.39 16 21 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 22 C -0.01 -0.16 5.47 -17.43 -0.10 -0.25 16 23 N -0.92 -27.18 10.58 55.49 0.59 -26.59 16 24 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 N -0.20 -2.40 12.04 32.84 0.40 -2.00 16 29 N -0.06 -0.67 13.65 60.35 0.82 0.16 16 30 H 0.10 0.22 8.06 -52.49 -0.42 -0.21 16 31 H 0.10 0.29 7.84 -52.49 -0.41 -0.12 16 32 H 0.12 0.20 8.06 -52.48 -0.42 -0.22 16 33 H 0.08 0.33 7.79 -51.93 -0.40 -0.08 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.11 0.10 8.08 -51.93 -0.42 -0.32 16 37 H 0.21 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.41 4.42 8.16 -40.82 -0.33 4.08 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.83 7.65 -51.93 -0.40 0.43 16 43 H 0.06 1.13 8.02 -51.93 -0.42 0.71 16 44 H 0.07 1.31 7.84 -51.93 -0.41 0.90 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.06 1.03 7.76 -51.93 -0.40 0.62 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.02 0.62 8.06 -51.93 -0.42 0.20 16 50 H 0.07 1.87 6.93 -51.93 -0.36 1.51 16 51 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 422.43 15.07 6.37 6.37 Total: -1.00 -34.11 422.43 -8.49 -42.60 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -8.59 Total: -0.01 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -2.06 Total: -1.63 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.73 Total: -56.07 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -34.11 -8.49 -42.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663109923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.484 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds