Wall clock time and date at job start Wed Apr 1 2020 05:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47286 * 2 1 4 4 C 1.30997 * 120.00091 * 125.00095 * 3 2 1 5 5 C 1.50700 * 120.00231 * 180.27332 * 4 3 2 6 6 N 1.46506 * 109.47125 * 124.72427 * 5 4 3 7 7 C 1.36733 * 127.13543 * 269.71281 * 6 5 4 8 8 C 1.50700 * 126.35127 * 359.96658 * 7 6 5 9 9 H 1.09004 * 110.21559 * 15.69885 * 8 7 6 10 10 C 1.54481 * 110.24659 * 253.76981 * 8 7 6 11 11 C 1.54760 * 101.70538 * 215.63708 * 10 8 7 12 12 C 1.51284 * 104.23351 * 24.69626 * 11 10 8 13 13 O 1.21280 * 124.94070 * 163.78908 * 12 11 10 14 14 N 1.34424 * 110.11640 * 343.80730 * 12 11 10 15 15 N 1.30298 * 107.30387 * 179.83328 * 7 6 5 16 16 N 1.28537 * 110.04966 * 0.44272 * 15 7 6 17 17 C 1.31211 * 109.86152 * 359.71630 * 16 15 7 18 18 N 1.38580 * 126.47492 * 179.97438 * 17 16 15 19 19 C 1.46895 * 110.99789 * 123.98052 * 18 17 16 20 20 C 1.46901 * 110.99570 * 0.03355 * 18 17 16 21 21 H 1.08994 * 109.47419 * 59.99855 * 20 18 17 22 22 C 1.53005 * 109.47270 * 299.99335 * 20 18 17 23 23 C 1.50705 * 109.46707 * 179.97438 * 20 18 17 24 24 H 1.07997 * 120.00573 * 35.03452 * 23 20 18 25 25 C 1.37885 * 119.99823 * 215.03135 * 23 20 18 26 26 N 1.31508 * 120.00214 * 184.82669 * 25 23 20 27 27 Si 1.86796 * 119.99773 * 4.82711 * 25 23 20 28 28 H 1.48497 * 109.47335 * 84.65502 * 27 25 23 29 29 H 1.48502 * 109.47117 * 204.65602 * 27 25 23 30 30 H 1.48495 * 109.47389 * 324.65375 * 27 25 23 31 31 H 1.08999 * 109.47009 * 299.99738 * 1 2 3 32 32 H 1.08995 * 109.47105 * 59.99923 * 1 2 3 33 33 H 1.09004 * 109.46946 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46816 * 239.99542 * 2 1 3 35 35 H 1.09005 * 109.47109 * 120.00226 * 2 1 3 36 36 H 1.07997 * 119.99840 * 304.99907 * 3 2 1 37 37 H 1.08006 * 120.00078 * 0.02562 * 4 3 2 38 38 H 1.09004 * 109.47482 * 244.72632 * 5 4 3 39 39 H 1.09001 * 109.47042 * 4.72642 * 5 4 3 40 40 H 1.09003 * 110.96397 * 333.70138 * 10 8 7 41 41 H 1.09002 * 110.96900 * 97.46161 * 10 8 7 42 42 H 1.08998 * 110.41481 * 266.03022 * 11 10 8 43 43 H 1.09000 * 110.63120 * 143.46697 * 11 10 8 44 44 H 0.96997 * 124.34786 * 179.61171 * 14 12 11 45 45 H 1.09004 * 109.47150 * 60.00419 * 19 18 17 46 46 H 1.09006 * 109.47493 * 180.02562 * 19 18 17 47 47 H 1.09005 * 109.47498 * 300.00249 * 19 18 17 48 48 H 1.09001 * 109.46889 * 55.66069 * 22 20 18 49 49 H 1.08993 * 109.46974 * 175.66638 * 22 20 18 50 50 H 1.09003 * 109.46888 * 295.66329 * 22 20 18 51 51 H 0.96994 * 120.00086 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8642 1.8214 0.9293 5 6 3.3618 3.2438 0.9329 6 7 3.0731 3.8589 2.2309 7 6 1.9471 4.5489 2.5852 8 6 0.7548 4.8248 1.7058 9 1 0.7728 4.1739 0.8316 10 6 0.7442 6.3065 1.2690 11 6 -0.7714 6.6192 1.2556 12 6 -1.3662 5.6183 2.2216 13 8 -2.4733 5.6980 2.7103 14 7 -0.4889 4.6281 2.4599 15 7 2.0947 4.9211 3.8251 16 7 3.2327 4.5242 4.2718 17 6 3.8748 3.8670 3.3351 18 7 5.1301 3.2906 3.4459 19 6 5.0834 1.8600 3.1160 20 6 5.6905 3.5036 4.7870 21 1 5.0328 3.0545 5.5312 22 6 5.8146 5.0048 5.0555 23 6 7.0525 2.8638 4.8696 24 1 7.7006 2.8597 4.0058 25 6 7.4712 2.2835 6.0483 26 7 8.6938 1.8098 6.1500 27 14 6.3019 2.1703 7.5005 28 1 5.4559 0.9578 7.3616 29 1 7.0837 2.0866 8.7603 30 1 5.4364 3.3764 7.5344 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.7066 2.1087 -0.7662 37 1 3.1903 1.1333 1.6952 38 1 4.4376 3.2530 0.7577 39 1 2.8606 3.8061 0.1449 40 1 1.2646 6.9310 1.9952 41 1 1.1768 6.4233 0.2753 42 1 -1.1807 6.4741 0.2558 43 1 -0.9566 7.6370 1.5987 44 1 -0.6564 3.8796 3.0536 45 1 4.7304 1.7345 2.0924 46 1 6.0815 1.4322 3.2115 47 1 4.4037 1.3513 3.7997 48 1 4.8428 5.4796 4.9202 49 1 6.1576 5.1638 6.0778 50 1 6.5318 5.4402 4.3597 51 1 8.9882 1.4013 6.9790 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001763623404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:33 Heat of formation + Delta-G solvation = 79.357970 kcal Electronic energy + Delta-G solvation = -32007.960820 eV Core-core repulsion = 27944.848011 eV Total energy + Delta-G solvation = -4063.112809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.84212 -40.35656 -37.53771 -37.08736 -36.55540 -34.67163 -32.75195 -31.57509 -31.27720 -30.54216 -30.00645 -27.65285 -26.75905 -25.36433 -24.56929 -23.12760 -22.84659 -21.81879 -20.77556 -20.60702 -20.07871 -19.37779 -17.58141 -17.34453 -17.08538 -16.34731 -16.19428 -15.55833 -15.16815 -15.09059 -14.92942 -14.66923 -14.19229 -14.04121 -13.94392 -13.69884 -13.56314 -13.34020 -13.03338 -12.97126 -12.62630 -12.50414 -12.45189 -12.10291 -12.04032 -11.67851 -11.53201 -11.42880 -11.38734 -11.17756 -11.02050 -10.74088 -10.57516 -10.49122 -10.18165 -10.09187 -9.99937 -9.76059 -9.68876 -9.53463 -9.37234 -8.90839 -8.69434 -7.60622 -6.23649 -4.25119 1.56680 1.92708 2.35082 2.57724 3.03205 3.21826 3.27239 3.31732 3.40495 3.92436 4.09568 4.20002 4.29577 4.30880 4.35287 4.41047 4.52191 4.67701 4.70035 4.92199 4.95699 4.99352 5.01718 5.11122 5.15410 5.33518 5.38520 5.43808 5.48934 5.55032 5.57918 5.66034 5.72947 5.83442 5.86081 5.90386 6.09459 6.20694 6.32494 6.42528 6.45329 6.52551 6.67111 6.73146 6.81080 6.91690 6.98244 7.24517 7.42574 7.58414 7.85169 8.03424 8.42870 8.82179 9.10454 9.38409 10.87867 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010440 B = 0.003594 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.328512 B = 7788.298588 C = 9319.326182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.129 4.129 4 C -0.189 4.189 5 C 0.139 3.861 6 N -0.479 5.479 7 C 0.124 3.876 8 C 0.235 3.765 9 H 0.094 0.906 10 C -0.124 4.124 11 C -0.154 4.154 12 C 0.525 3.475 13 O -0.534 6.534 14 N -0.711 5.711 15 N -0.262 5.262 16 N -0.324 5.324 17 C 0.394 3.606 18 N -0.446 5.446 19 C 0.024 3.976 20 C 0.196 3.804 21 H 0.023 0.977 22 C -0.144 4.144 23 C -0.513 4.513 24 H 0.083 0.917 25 C 0.081 3.919 26 N -0.889 5.889 27 Si 0.865 3.135 28 H -0.276 1.276 29 H -0.285 1.285 30 H -0.257 1.257 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.413 0.587 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.026 0.974 48 H 0.058 0.942 49 H 0.048 0.952 50 H 0.044 0.956 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.189 0.858 -18.009 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 C -0.148 4.148 4 C -0.208 4.208 5 C 0.016 3.984 6 N -0.176 5.176 7 C -0.144 4.144 8 C 0.127 3.873 9 H 0.111 0.889 10 C -0.162 4.162 11 C -0.194 4.194 12 C 0.312 3.688 13 O -0.411 6.411 14 N -0.366 5.366 15 N -0.102 5.102 16 N -0.170 5.170 17 C 0.039 3.961 18 N -0.170 5.170 19 C -0.122 4.122 20 C 0.092 3.908 21 H 0.040 0.960 22 C -0.202 4.202 23 C -0.551 4.551 24 H 0.101 0.899 25 C -0.123 4.123 26 N -0.525 5.525 27 Si 0.692 3.308 28 H -0.202 1.202 29 H -0.211 1.211 30 H -0.182 1.182 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.253 0.747 45 H 0.081 0.919 46 H 0.125 0.875 47 H 0.045 0.955 48 H 0.076 0.924 49 H 0.067 0.933 50 H 0.063 0.937 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.548 1.745 -16.666 22.859 hybrid contribution -0.299 -1.522 0.367 1.594 sum -15.847 0.223 -16.298 22.733 Atomic orbital electron populations 1.21702 0.94841 1.01923 1.02038 1.20684 0.96306 0.93861 1.02805 1.22947 0.95917 0.97830 0.98131 1.23317 1.00039 0.96539 1.00916 1.20888 1.03812 0.91234 0.82422 1.46137 1.15648 1.43536 1.12250 1.24253 0.91209 1.02873 0.96040 1.19563 0.78922 0.98161 0.90697 0.88863 1.22762 0.96166 0.93629 1.03685 1.22387 0.95514 1.00802 1.00725 1.20779 0.84286 0.82398 0.81370 1.90765 1.19921 1.76275 1.54101 1.46100 1.15361 1.27150 1.48001 1.73949 1.11297 1.18776 1.06171 1.74841 1.00678 1.19270 1.22187 1.23439 0.90250 0.99258 0.83182 1.59150 1.09905 1.13837 1.34076 1.22686 1.04965 0.85557 0.99015 1.19826 0.94980 0.95215 0.80795 0.95959 1.22094 1.00727 0.96886 1.00507 1.20806 0.98020 1.36659 0.99632 0.89871 1.24917 0.94978 0.94262 0.98159 1.69864 1.16559 1.38872 1.27243 0.87020 0.81563 0.79697 0.82560 1.20212 1.21078 1.18165 0.92608 0.92556 0.92391 0.90690 0.91302 0.87023 0.85818 0.87060 0.88678 0.88755 0.88668 0.87596 0.87541 0.74747 0.91891 0.87503 0.95519 0.92362 0.93262 0.93657 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.57 16 2 C -0.10 -0.67 6.38 -27.89 -0.18 -0.85 16 3 C -0.13 -0.89 9.12 -36.03 -0.33 -1.22 16 4 C -0.19 -1.69 8.28 -36.03 -0.30 -1.99 16 5 C 0.14 1.32 5.40 -5.19 -0.03 1.30 16 6 N -0.48 -6.59 2.79 -115.36 -0.32 -6.91 16 7 C 0.12 1.70 6.87 -154.02 -1.06 0.64 16 8 C 0.24 2.16 3.82 -68.16 -0.26 1.90 16 9 H 0.09 0.61 7.36 -51.93 -0.38 0.23 16 10 C -0.12 -0.91 6.69 -25.03 -0.17 -1.07 16 11 C -0.15 -1.13 6.86 -26.67 -0.18 -1.31 16 12 C 0.53 6.08 8.43 -10.86 -0.09 5.99 16 13 O -0.53 -8.43 18.03 5.56 0.10 -8.33 16 14 N -0.71 -7.57 5.86 -53.88 -0.32 -7.88 16 15 N -0.26 -4.74 12.17 32.99 0.40 -4.33 16 16 N -0.32 -6.69 9.01 30.31 0.27 -6.41 16 17 C 0.39 7.28 6.73 -318.88 -2.15 5.13 16 18 N -0.45 -8.86 4.69 -176.08 -0.83 -9.68 16 19 C 0.02 0.42 8.48 60.06 0.51 0.93 16 20 C 0.20 4.60 1.39 -68.86 -0.10 4.50 16 21 H 0.02 0.57 5.27 -51.93 -0.27 0.29 16 22 C -0.14 -3.28 9.03 37.16 0.34 -2.95 16 23 C -0.51 -13.48 7.39 -34.44 -0.25 -13.74 16 24 H 0.08 2.36 8.05 -52.49 -0.42 1.94 16 25 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 26 N -0.89 -25.69 13.96 55.43 0.77 -24.91 16 27 Si 0.86 21.18 26.98 -169.99 -4.59 16.59 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 30 H -0.26 -6.33 6.83 56.52 0.39 -5.94 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.53 7.79 -51.93 -0.40 0.12 16 36 H 0.11 0.57 7.84 -52.49 -0.41 0.16 16 37 H 0.12 1.32 5.95 -52.48 -0.31 1.01 16 38 H 0.11 1.12 7.57 -51.93 -0.39 0.73 16 39 H 0.09 0.60 7.18 -51.93 -0.37 0.22 16 40 H 0.09 0.89 7.91 -51.93 -0.41 0.48 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.41 4.59 8.96 -40.82 -0.37 4.22 16 45 H 0.06 0.85 3.47 -51.93 -0.18 0.67 16 46 H 0.11 2.05 6.82 -51.93 -0.35 1.69 16 47 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 1.31 5.34 -51.93 -0.28 1.03 16 49 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 50 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 404.00 15.07 6.09 6.09 Total: -1.00 -34.06 404.00 -10.33 -44.39 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.94 Total: 2.60 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -3.97 Total: -1.19 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.01 Total: -60.14 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.10 Total: -8.33 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.59 Total: 16.59 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.06 -10.33 -44.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001763623404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.743 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds