Wall clock time and date at job start Wed Apr 1 2020 05:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47286 * 2 1 4 4 C 1.30997 * 120.00091 * 125.00095 * 3 2 1 5 5 C 1.50700 * 120.00231 * 180.27332 * 4 3 2 6 6 N 1.46506 * 109.47125 * 124.72427 * 5 4 3 7 7 C 1.36733 * 127.13543 * 269.71281 * 6 5 4 8 8 C 1.50700 * 126.35127 * 359.96658 * 7 6 5 9 9 H 1.09004 * 110.21559 * 15.69885 * 8 7 6 10 10 C 1.54481 * 110.24659 * 253.76981 * 8 7 6 11 11 C 1.54760 * 101.70538 * 215.63708 * 10 8 7 12 12 C 1.51284 * 104.23351 * 24.69626 * 11 10 8 13 13 O 1.21280 * 124.94070 * 163.78908 * 12 11 10 14 14 N 1.34424 * 110.11640 * 343.80730 * 12 11 10 15 15 N 1.30298 * 107.30387 * 179.83328 * 7 6 5 16 16 N 1.28537 * 110.04966 * 0.44272 * 15 7 6 17 17 C 1.31211 * 109.86152 * 359.71630 * 16 15 7 18 18 N 1.38580 * 126.47492 * 179.97438 * 17 16 15 19 19 C 1.46895 * 110.99789 * 123.98052 * 18 17 16 20 20 C 1.46901 * 110.99570 * 0.03355 * 18 17 16 21 21 H 1.08994 * 109.47419 * 59.99855 * 20 18 17 22 22 C 1.53005 * 109.47270 * 299.99335 * 20 18 17 23 23 C 1.50705 * 109.46707 * 179.97438 * 20 18 17 24 24 H 1.07997 * 120.00573 * 35.03452 * 23 20 18 25 25 C 1.37885 * 119.99823 * 215.03135 * 23 20 18 26 26 N 1.31508 * 120.00214 * 184.82669 * 25 23 20 27 27 Si 1.86796 * 119.99773 * 4.82711 * 25 23 20 28 28 H 1.48497 * 109.47335 * 84.65502 * 27 25 23 29 29 H 1.48502 * 109.47117 * 204.65602 * 27 25 23 30 30 H 1.48495 * 109.47389 * 324.65375 * 27 25 23 31 31 H 1.08999 * 109.47009 * 299.99738 * 1 2 3 32 32 H 1.08995 * 109.47105 * 59.99923 * 1 2 3 33 33 H 1.09004 * 109.46946 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46816 * 239.99542 * 2 1 3 35 35 H 1.09005 * 109.47109 * 120.00226 * 2 1 3 36 36 H 1.07997 * 119.99840 * 304.99907 * 3 2 1 37 37 H 1.08006 * 120.00078 * 0.02562 * 4 3 2 38 38 H 1.09004 * 109.47482 * 244.72632 * 5 4 3 39 39 H 1.09001 * 109.47042 * 4.72642 * 5 4 3 40 40 H 1.09003 * 110.96397 * 333.70138 * 10 8 7 41 41 H 1.09002 * 110.96900 * 97.46161 * 10 8 7 42 42 H 1.08998 * 110.41481 * 266.03022 * 11 10 8 43 43 H 1.09000 * 110.63120 * 143.46697 * 11 10 8 44 44 H 0.96997 * 124.34786 * 179.61171 * 14 12 11 45 45 H 1.09004 * 109.47150 * 60.00419 * 19 18 17 46 46 H 1.09006 * 109.47493 * 180.02562 * 19 18 17 47 47 H 1.09005 * 109.47498 * 300.00249 * 19 18 17 48 48 H 1.09001 * 109.46889 * 55.66069 * 22 20 18 49 49 H 1.08993 * 109.46974 * 175.66638 * 22 20 18 50 50 H 1.09003 * 109.46888 * 295.66329 * 22 20 18 51 51 H 0.96994 * 120.00086 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8642 1.8214 0.9293 5 6 3.3618 3.2438 0.9329 6 7 3.0731 3.8589 2.2309 7 6 1.9471 4.5489 2.5852 8 6 0.7548 4.8248 1.7058 9 1 0.7728 4.1739 0.8316 10 6 0.7442 6.3065 1.2690 11 6 -0.7714 6.6192 1.2556 12 6 -1.3662 5.6183 2.2216 13 8 -2.4733 5.6980 2.7103 14 7 -0.4889 4.6281 2.4599 15 7 2.0947 4.9211 3.8251 16 7 3.2327 4.5242 4.2718 17 6 3.8748 3.8670 3.3351 18 7 5.1301 3.2906 3.4459 19 6 5.0834 1.8600 3.1160 20 6 5.6905 3.5036 4.7870 21 1 5.0328 3.0545 5.5312 22 6 5.8146 5.0048 5.0555 23 6 7.0525 2.8638 4.8696 24 1 7.7006 2.8597 4.0058 25 6 7.4712 2.2835 6.0483 26 7 8.6938 1.8098 6.1500 27 14 6.3019 2.1703 7.5005 28 1 5.4559 0.9578 7.3616 29 1 7.0837 2.0866 8.7603 30 1 5.4364 3.3764 7.5344 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.7066 2.1087 -0.7662 37 1 3.1903 1.1333 1.6952 38 1 4.4376 3.2530 0.7577 39 1 2.8606 3.8061 0.1449 40 1 1.2646 6.9310 1.9952 41 1 1.1768 6.4233 0.2753 42 1 -1.1807 6.4741 0.2558 43 1 -0.9566 7.6370 1.5987 44 1 -0.6564 3.8796 3.0536 45 1 4.7304 1.7345 2.0924 46 1 6.0815 1.4322 3.2115 47 1 4.4037 1.3513 3.7997 48 1 4.8428 5.4796 4.9202 49 1 6.1576 5.1638 6.0778 50 1 6.5318 5.4402 4.3597 51 1 8.9882 1.4013 6.9790 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001763623404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:32 Heat of formation + Delta-G solvation = 57.130228 kcal Electronic energy + Delta-G solvation = -32008.924687 eV Core-core repulsion = 27944.848011 eV Total energy + Delta-G solvation = -4064.076676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.08424 -41.20414 -39.06754 -37.90770 -37.51395 -35.58102 -34.73120 -32.25340 -32.18687 -32.00741 -31.39534 -28.77218 -27.54568 -27.13440 -26.11287 -23.91557 -23.78149 -23.03621 -21.64684 -21.55658 -21.17728 -20.45790 -19.29516 -18.50497 -18.04733 -17.43046 -17.35944 -16.95459 -16.41057 -16.12391 -15.92274 -15.72532 -15.52486 -15.06005 -14.83405 -14.74020 -14.58435 -14.55897 -14.21488 -14.09611 -13.79444 -13.57826 -13.25913 -13.08860 -13.03577 -12.94499 -12.76776 -12.74418 -12.52149 -12.27241 -12.18752 -12.04127 -12.01546 -11.89906 -11.86171 -11.63839 -11.14778 -11.04910 -11.00274 -10.83784 -10.64273 -10.26606 -10.15463 -9.09860 -8.38006 -6.41178 0.66177 0.92119 1.23199 1.30066 1.41360 1.45493 1.63793 1.77147 2.25098 2.40051 2.79111 3.00571 3.12913 3.39751 3.62121 3.64035 3.69845 3.85029 3.98031 4.06939 4.14132 4.22358 4.30600 4.35505 4.45374 4.46505 4.49273 4.53020 4.58787 4.66640 4.76944 4.85145 4.86608 4.91779 5.00893 5.01703 5.06975 5.08581 5.11921 5.15779 5.17375 5.34094 5.40063 5.51155 5.57691 5.67622 5.70655 5.78884 5.82358 5.96601 6.16843 6.50558 6.66003 7.16171 7.24368 7.81261 8.77157 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010440 B = 0.003594 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.328512 B = 7788.298588 C = 9319.326182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.098 4.098 4 C -0.217 4.217 5 C 0.131 3.869 6 N -0.465 5.465 7 C 0.158 3.842 8 C 0.233 3.767 9 H 0.139 0.861 10 C -0.116 4.116 11 C -0.141 4.141 12 C 0.516 3.484 13 O -0.586 6.586 14 N -0.713 5.713 15 N -0.310 5.310 16 N -0.367 5.367 17 C 0.373 3.627 18 N -0.449 5.449 19 C 0.031 3.969 20 C 0.205 3.795 21 H 0.004 0.996 22 C -0.135 4.135 23 C -0.503 4.503 24 H 0.055 0.945 25 C 0.038 3.962 26 N -0.929 5.929 27 Si 0.916 3.084 28 H -0.271 1.271 29 H -0.279 1.279 30 H -0.262 1.262 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.146 0.854 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.144 0.856 40 H 0.070 0.930 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.110 0.890 44 H 0.407 0.593 45 H 0.104 0.896 46 H 0.083 0.917 47 H 0.015 0.985 48 H 0.064 0.936 49 H 0.038 0.962 50 H 0.044 0.956 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.425 1.412 -21.838 27.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.117 4.117 4 C -0.236 4.236 5 C 0.011 3.989 6 N -0.160 5.160 7 C -0.112 4.112 8 C 0.125 3.875 9 H 0.156 0.844 10 C -0.155 4.155 11 C -0.181 4.181 12 C 0.304 3.696 13 O -0.467 6.467 14 N -0.366 5.366 15 N -0.148 5.148 16 N -0.212 5.212 17 C 0.016 3.984 18 N -0.173 5.173 19 C -0.115 4.115 20 C 0.099 3.901 21 H 0.022 0.978 22 C -0.193 4.193 23 C -0.541 4.541 24 H 0.073 0.927 25 C -0.163 4.163 26 N -0.568 5.568 27 Si 0.741 3.259 28 H -0.196 1.196 29 H -0.204 1.204 30 H -0.186 1.186 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.164 0.836 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.161 0.839 40 H 0.089 0.911 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.129 0.871 44 H 0.245 0.755 45 H 0.122 0.878 46 H 0.101 0.899 47 H 0.033 0.967 48 H 0.083 0.917 49 H 0.057 0.943 50 H 0.063 0.937 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.774 2.291 -20.533 27.254 hybrid contribution 0.265 -1.740 1.378 2.235 sum -17.510 0.552 -19.155 25.958 Atomic orbital electron populations 1.21685 0.94252 1.02173 1.02205 1.20761 0.96740 0.94056 1.02722 1.23205 0.93245 0.98033 0.97215 1.23055 1.02574 0.96016 1.01979 1.21318 1.04389 0.91990 0.81190 1.46323 1.14456 1.42712 1.12538 1.25147 0.91565 0.99368 0.95081 1.20134 0.76133 1.00749 0.90463 0.84412 1.22841 0.96071 0.91200 1.05352 1.22430 0.95021 0.99440 1.01176 1.21578 0.83640 0.82923 0.81425 1.90737 1.22263 1.77394 1.56259 1.46253 1.15767 1.26797 1.47796 1.73865 1.10967 1.21275 1.08727 1.74673 1.02037 1.20289 1.24213 1.23126 0.90353 1.00122 0.84839 1.58918 1.11545 1.15035 1.31758 1.22703 1.03360 0.84278 1.01183 1.19504 0.93131 0.94928 0.82530 0.97795 1.21985 1.00963 0.96611 0.99787 1.20867 0.98927 1.35919 0.98408 0.92707 1.25486 0.95987 0.94422 1.00358 1.69957 1.18060 1.40653 1.28108 0.86206 0.79888 0.79528 0.80240 1.19616 1.20404 1.18619 0.93733 0.90964 0.92314 0.89312 0.92984 0.83599 0.88403 0.87664 0.83866 0.91145 0.84157 0.83937 0.87144 0.75507 0.87807 0.89865 0.96655 0.91744 0.94287 0.93712 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 71.98 0.71 -0.66 16 2 C -0.11 -1.09 6.38 29.85 0.19 -0.90 16 3 C -0.10 -0.90 9.12 25.65 0.23 -0.67 16 4 C -0.22 -3.19 8.28 25.65 0.21 -2.97 16 5 C 0.13 1.98 5.40 85.63 0.46 2.44 16 6 N -0.46 -11.73 2.79 -518.90 -1.45 -13.17 16 7 C 0.16 3.93 6.87 137.64 0.95 4.88 16 8 C 0.23 3.26 3.82 44.70 0.17 3.43 16 9 H 0.14 0.83 7.36 -2.38 -0.02 0.81 16 10 C -0.12 -1.13 6.69 31.70 0.21 -0.92 16 11 C -0.14 -1.46 6.86 30.63 0.21 -1.25 16 12 C 0.52 10.82 8.43 87.90 0.74 11.56 16 13 O -0.59 -18.17 18.03 -3.03 -0.05 -18.23 16 14 N -0.71 -13.46 5.86 -442.96 -2.59 -16.06 16 15 N -0.31 -11.05 12.17 -49.54 -0.60 -11.65 16 16 N -0.37 -15.29 9.01 -58.01 -0.52 -15.82 16 17 C 0.37 13.68 6.73 260.11 1.75 15.44 16 18 N -0.45 -18.12 4.69 -710.99 -3.33 -21.45 16 19 C 0.03 1.11 8.48 127.69 1.08 2.19 16 20 C 0.21 9.89 1.39 44.17 0.06 9.95 16 21 H 0.00 0.22 5.27 -2.39 -0.01 0.21 16 22 C -0.13 -6.33 9.03 71.98 0.65 -5.68 16 23 C -0.50 -27.43 7.39 25.60 0.19 -27.24 16 24 H 0.05 3.26 8.05 -2.91 -0.02 3.23 16 25 C 0.04 2.12 5.47 84.66 0.46 2.59 16 26 N -0.93 -55.33 13.96 21.45 0.30 -55.03 16 27 Si 0.92 44.92 26.98 68.60 1.85 46.77 16 28 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 29 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 30 H -0.26 -12.93 6.83 99.48 0.68 -12.25 16 31 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 0.72 7.79 -2.38 -0.02 0.70 16 36 H 0.15 0.41 7.84 -2.91 -0.02 0.38 16 37 H 0.10 1.97 5.95 -2.91 -0.02 1.95 16 38 H 0.11 1.79 7.57 -2.38 -0.02 1.77 16 39 H 0.14 0.79 7.18 -2.39 -0.02 0.78 16 40 H 0.07 1.10 7.91 -2.39 -0.02 1.08 16 41 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.41 8.55 8.96 -92.71 -0.83 7.72 16 45 H 0.10 2.77 3.47 -2.39 -0.01 2.76 16 46 H 0.08 3.33 6.82 -2.38 -0.02 3.32 16 47 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 48 H 0.06 2.96 5.34 -2.39 -0.01 2.95 16 49 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -81.02 404.00 1.98 -79.04 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.09 Total: 13.39 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 8.29 Total: 12.20 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -8.20 Total: -133.18 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.05 Total: -18.23 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.85 Total: 46.77 kcal Total: -81.02 1.98 -79.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001763623404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.172 kcal (2) G-P(sol) polarization free energy of solvation -81.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds