Wall clock time and date at job start Wed Apr 1 2020 06:29:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09003 * 109.99833 * 2 1
4 4 C 1.54330 * 109.87899 * 121.08922 * 2 1 3
5 5 C 1.55161 * 102.93879 * 141.60960 * 4 2 1
6 6 H 1.09002 * 110.99935 * 82.57540 * 5 4 2
7 7 N 1.46905 * 111.00072 * 206.38696 * 5 4 2
8 8 C 1.48533 * 110.99614 * 177.40506 * 7 5 4
9 9 C 1.54935 * 103.22704 * 159.72126 * 8 7 5
10 10 C 1.54600 * 102.92025 * 322.58578 * 9 8 7
11 11 C 1.47899 * 110.99682 * 294.80011 * 7 5 4
12 12 C 1.54903 * 101.58221 * 324.49866 * 5 4 2
13 13 N 1.47016 * 109.88377 * 238.89906 * 2 1 3
14 14 C 1.34772 * 125.64732 * 61.60070 * 13 2 1
15 15 O 1.21589 * 120.00287 * 0.03017 * 14 13 2
16 16 N 1.34786 * 119.99902 * 180.02562 * 14 13 2
17 17 C 1.40194 * 119.99992 * 179.97438 * 16 14 13
18 18 C 1.40407 * 125.96960 * 0.02562 * 17 16 14
19 19 C 1.35250 * 107.86138 * 179.97438 * 18 17 16
20 20 N 1.34962 * 107.86304 * 359.97438 * 19 18 17
21 21 C 1.46494 * 125.97929 * 180.02562 * 20 19 18
22 22 C 1.50700 * 109.46866 * 124.99874 * 21 20 19
23 23 H 1.07995 * 120.00271 * 0.02562 * 22 21 20
24 24 C 1.37882 * 119.99775 * 180.02562 * 22 21 20
25 25 N 1.31520 * 119.99997 * 0.02562 * 24 22 21
26 26 Si 1.86799 * 119.99992 * 180.02562 * 24 22 21
27 27 H 1.48505 * 109.47145 * 89.99783 * 26 24 22
28 28 H 1.48494 * 109.47305 * 210.00316 * 26 24 22
29 29 H 1.48507 * 109.47130 * 330.00387 * 26 24 22
30 30 N 1.31202 * 125.97382 * 179.68993 * 17 16 14
31 31 H 1.09000 * 109.47208 * 298.91535 * 1 2 3
32 32 H 1.09009 * 109.46556 * 58.90613 * 1 2 3
33 33 H 1.08996 * 109.47201 * 178.90584 * 1 2 3
34 34 H 1.08999 * 110.72083 * 23.25053 * 4 2 1
35 35 H 1.08999 * 110.72103 * 259.97312 * 4 2 1
36 36 H 1.09001 * 110.66983 * 278.15646 * 8 7 5
37 37 H 1.09000 * 110.66796 * 41.28783 * 8 7 5
38 38 H 1.08996 * 110.72571 * 204.23043 * 9 8 7
39 39 H 1.09003 * 110.72536 * 80.94065 * 9 8 7
40 40 H 1.09000 * 110.30698 * 263.03797 * 10 9 8
41 41 H 1.08998 * 110.30754 * 140.87041 * 10 9 8
42 42 H 1.08999 * 109.92359 * 333.50623 * 11 7 5
43 43 H 1.08997 * 109.91830 * 94.81212 * 11 7 5
44 44 H 1.09002 * 110.36703 * 155.84429 * 12 5 4
45 45 H 1.08997 * 110.37304 * 278.05887 * 12 5 4
46 46 H 0.97002 * 119.99599 * 359.97438 * 16 14 13
47 47 H 1.08001 * 126.06759 * 0.02562 * 18 17 16
48 48 H 1.08004 * 126.06370 * 179.97438 * 19 18 17
49 49 H 1.08992 * 109.47529 * 245.00758 * 21 20 19
50 50 H 1.09002 * 109.46678 * 5.00273 * 21 20 19
51 51 H 0.97001 * 119.99469 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9028 1.0243 0.0000
4 6 2.0548 -0.7494 1.2429
5 6 3.2875 -1.5142 0.6926
6 1 4.1653 -0.8688 0.6606
7 7 3.5542 -2.7224 1.4847
8 6 4.6958 -3.4873 0.9208
9 6 5.1564 -4.3658 2.1109
10 6 4.9724 -3.4268 3.3253
11 6 3.9463 -2.3736 2.8675
12 6 2.8145 -1.8795 -0.7365
13 7 2.0300 -0.7141 -1.1838
14 6 1.8073 -0.3623 -2.4656
15 8 1.1418 0.6233 -2.7187
16 7 2.3224 -1.1030 -3.4670
17 6 2.0903 -0.7373 -4.8003
18 6 1.3442 0.3703 -5.2338
19 6 1.3573 0.3758 -6.5862
20 7 2.0831 -0.6851 -6.9974
21 6 2.3531 -1.0560 -8.3887
22 6 3.8410 -1.1712 -8.5982
23 1 4.5178 -0.9871 -7.7770
24 6 4.3382 -1.5118 -9.8383
25 7 3.5141 -1.7355 -10.8385
26 14 6.1825 -1.6553 -10.0978
27 1 6.6150 -3.0480 -9.8171
28 1 6.5132 -1.3080 -11.5032
29 1 6.8857 -0.7241 -9.1792
30 7 2.5375 -1.3666 -5.8611
31 1 -0.3633 0.4969 0.8995
32 1 -0.3633 0.5308 -0.8801
33 1 -0.3633 -1.0274 -0.0196
34 1 1.3050 -1.4458 1.6184
35 1 2.3528 -0.0458 2.0202
36 1 4.3681 -4.1092 0.0877
37 1 5.4937 -2.8134 0.6086
38 1 6.2025 -4.6501 1.9983
39 1 4.5237 -5.2483 2.2065
40 1 5.9179 -2.9481 3.5800
41 1 4.5873 -3.9839 4.1793
42 1 4.3985 -1.3820 2.8864
43 1 3.0727 -2.3988 3.5187
44 1 3.6716 -2.0339 -1.3920
45 1 2.1902 -2.7727 -0.7129
46 1 2.8537 -1.8890 -3.2650
47 1 0.8484 1.0905 -4.5997
48 1 0.8730 1.1006 -7.2238
49 1 1.8800 -2.0131 -8.6080
50 1 1.9508 -0.2912 -9.0531
51 1 3.8639 -1.9755 -11.7108
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000286886307.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:29:18
Heat of formation + Delta-G solvation = 69.722577 kcal
Electronic energy + Delta-G solvation = -30485.743116 eV
Core-core repulsion = 26422.212485 eV
Total energy + Delta-G solvation = -4063.530631 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.93582 -40.20241 -39.16758 -37.36545 -34.72761 -33.39957 -32.83735 -31.95759
-30.58883 -29.36498 -29.21844 -28.95240 -26.61473 -26.03361 -23.66096 -22.82746
-22.19377 -21.36655 -20.80366 -20.57568 -19.86836 -19.08378 -17.88382 -17.19643
-16.56988 -16.40889 -16.34854 -15.89522 -15.29493 -15.02957 -14.51433 -14.40396
-14.22607 -14.05217 -13.95643 -13.77451 -13.33302 -13.21878 -12.87159 -12.77830
-12.55394 -12.32352 -12.21763 -12.18437 -12.03284 -11.78384 -11.74271 -11.57984
-11.29006 -11.24567 -11.04468 -10.99552 -10.93908 -10.87554 -10.37542 -10.23926
-10.01204 -9.61886 -9.46120 -8.92831 -8.81653 -8.61245 -8.05924 -7.37051
-6.22413 -4.27219 2.28750 2.69649 3.13810 3.24579 3.27987 3.30267
3.36014 3.63065 3.87349 3.92377 4.14605 4.22407 4.31191 4.36668
4.43122 4.51749 4.68244 4.83358 4.85812 4.97506 5.07534 5.12603
5.15556 5.19412 5.26240 5.35790 5.40007 5.42788 5.45801 5.48917
5.54534 5.55289 5.61936 5.68994 5.75163 5.84860 5.91109 6.03529
6.20288 6.37964 6.38686 6.57865 6.59336 6.73356 6.86078 7.03856
7.14303 7.53500 7.71781 7.83949 7.98470 8.10191 8.62592 8.69894
8.83432 9.38134 10.86246
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.011944 B = 0.002295 C = 0.001970
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2343.755639 B =12198.950180 C =14211.939474
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.158 3.842
3 H 0.076 0.924
4 C -0.118 4.118
5 C 0.062 3.938
6 H 0.061 0.939
7 N -0.506 5.506
8 C 0.030 3.970
9 C -0.124 4.124
10 C -0.132 4.132
11 C 0.037 3.963
12 C 0.107 3.893
13 N -0.631 5.631
14 C 0.734 3.266
15 O -0.562 6.562
16 N -0.642 5.642
17 C 0.276 3.724
18 C -0.286 4.286
19 C 0.051 3.949
20 N -0.321 5.321
21 C 0.259 3.741
22 C -0.527 4.527
23 H 0.068 0.932
24 C 0.061 3.939
25 N -0.895 5.895
26 Si 0.908 3.092
27 H -0.278 1.278
28 H -0.284 1.284
29 H -0.273 1.273
30 N -0.308 5.308
31 H 0.063 0.937
32 H 0.074 0.926
33 H 0.056 0.944
34 H 0.090 0.910
35 H 0.080 0.920
36 H 0.086 0.914
37 H 0.047 0.953
38 H 0.072 0.928
39 H 0.076 0.924
40 H 0.066 0.934
41 H 0.072 0.928
42 H 0.045 0.955
43 H 0.081 0.919
44 H 0.072 0.928
45 H 0.081 0.919
46 H 0.405 0.595
47 H 0.161 0.839
48 H 0.167 0.833
49 H 0.044 0.956
50 H 0.057 0.943
51 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.739 -1.290 29.305 29.343
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.054 3.946
3 H 0.094 0.906
4 C -0.156 4.156
5 C -0.047 4.047
6 H 0.079 0.921
7 N -0.231 5.231
8 C -0.098 4.098
9 C -0.162 4.162
10 C -0.171 4.171
11 C -0.090 4.090
12 C -0.017 4.017
13 N -0.371 5.371
14 C 0.435 3.565
15 O -0.437 6.437
16 N -0.292 5.292
17 C 0.023 3.977
18 C -0.317 4.317
19 C -0.099 4.099
20 N -0.103 5.103
21 C 0.141 3.859
22 C -0.565 4.565
23 H 0.087 0.913
24 C -0.141 4.141
25 N -0.534 5.534
26 Si 0.735 3.265
27 H -0.204 1.204
28 H -0.210 1.210
29 H -0.198 1.198
30 N -0.139 5.139
31 H 0.082 0.918
32 H 0.093 0.907
33 H 0.076 0.924
34 H 0.109 0.891
35 H 0.098 0.902
36 H 0.105 0.895
37 H 0.066 0.934
38 H 0.090 0.910
39 H 0.094 0.906
40 H 0.085 0.915
41 H 0.091 0.909
42 H 0.064 0.936
43 H 0.099 0.901
44 H 0.090 0.910
45 H 0.099 0.901
46 H 0.240 0.760
47 H 0.178 0.822
48 H 0.185 0.815
49 H 0.062 0.938
50 H 0.075 0.925
51 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -1.040 -1.892 28.263 28.345
hybrid contribution 1.629 0.598 0.047 1.736
sum 0.589 -1.294 28.310 28.346
Atomic orbital electron populations
1.22162 0.94431 1.02488 1.03042 1.21370 0.94867 0.95872 0.82531
0.90583 1.22802 0.97291 0.99032 0.96487 1.22935 0.97696 0.91110
0.92989 0.92074 1.64779 1.37935 1.18626 1.01755 1.23307 0.91890
0.96468 0.98124 1.22476 1.01389 0.98398 0.93900 1.22414 0.98860
0.97102 0.98688 1.22836 0.98428 0.97482 0.90285 1.22224 0.95506
0.89646 0.94308 1.47500 1.56093 1.29875 1.03602 1.15052 0.80090
0.82535 0.78816 1.90854 1.43590 1.27704 1.81544 1.41423 1.55328
1.30593 1.01892 1.18779 0.99543 0.95967 0.83460 1.21511 1.12846
1.03865 0.93517 1.22549 0.98344 0.93497 0.95508 1.49044 1.36001
1.18549 1.06667 1.19725 0.98433 0.97700 0.70024 1.21261 0.90637
1.48215 0.96421 0.91336 1.24950 0.98962 0.94754 0.95475 1.69924
1.34809 1.46776 1.01876 0.86329 0.84205 0.78632 0.77331 1.20362
1.20997 1.19751 1.77316 1.24503 1.21557 0.90566 0.91840 0.90686
0.92444 0.89141 0.90150 0.89523 0.93423 0.90951 0.90567 0.91530
0.90917 0.93622 0.90108 0.91001 0.90110 0.76005 0.82204 0.81545
0.93770 0.92549 0.92359
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.59 9.09 37.16 0.34 -1.25 16
2 C 0.16 1.52 3.46 -66.95 -0.23 1.29 16
3 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16
4 C -0.12 -0.81 5.53 -24.89 -0.14 -0.95 16
5 C 0.06 0.46 2.35 -65.56 -0.15 0.31 16
6 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16
7 N -0.51 -3.51 5.15 -219.94 -1.13 -4.64 16
8 C 0.03 0.19 5.99 -1.90 -0.01 0.18 16
9 C -0.12 -0.67 7.06 -24.87 -0.18 -0.85 16
10 C -0.13 -0.66 6.93 -25.37 -0.18 -0.84 16
11 C 0.04 0.21 6.11 -2.75 -0.02 0.20 16
12 C 0.11 0.96 5.61 -2.53 -0.01 0.95 16
13 N -0.63 -7.40 3.06 -168.69 -0.52 -7.91 16
14 C 0.73 11.65 8.25 -86.91 -0.72 10.93 16
15 O -0.56 -10.48 12.52 5.29 0.07 -10.42 16
16 N -0.64 -10.74 5.41 -15.51 -0.08 -10.82 16
17 C 0.28 5.77 8.11 -154.37 -1.25 4.51 16
18 C -0.29 -5.88 9.61 -39.83 -0.38 -6.27 16
19 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16
20 N -0.32 -7.61 3.67 -62.56 -0.23 -7.84 16
21 C 0.26 6.66 6.26 -5.20 -0.03 6.63 16
22 C -0.53 -14.80 9.23 -34.44 -0.32 -15.12 16
23 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16
24 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
25 N -0.90 -25.50 13.29 55.43 0.74 -24.77 16
26 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16
27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
29 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16
30 N -0.31 -7.27 12.42 31.44 0.39 -6.88 16
31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
32 H 0.07 0.94 6.90 -51.92 -0.36 0.59 16
33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
34 H 0.09 0.63 7.85 -51.93 -0.41 0.22 16
35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
36 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16
37 H 0.05 0.32 8.01 -51.93 -0.42 -0.10 16
38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16
39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
40 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16
41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
42 H 0.05 0.26 7.74 -51.93 -0.40 -0.15 16
43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
44 H 0.07 0.62 7.30 -51.93 -0.38 0.24 16
45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
46 H 0.40 5.74 7.30 -40.82 -0.30 5.45 16
47 H 0.16 3.23 5.91 -52.49 -0.31 2.92 16
48 H 0.17 2.79 8.06 -52.48 -0.42 2.37 16
49 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16
50 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16
51 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16
LS Contribution 405.85 15.07 6.12 6.12
Total: -1.00 -32.60 405.85 -11.70 -44.30
By element:
Atomic # 1 Polarization: 12.65 SS G_CDS: -8.45 Total: 4.20 kcal
Atomic # 6 Polarization: 5.75 SS G_CDS: -3.58 Total: 2.18 kcal
Atomic # 7 Polarization: -62.02 SS G_CDS: -0.84 Total: -62.85 kcal
Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.42 kcal
Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal
Total LS contribution 6.12 Total: 6.12 kcal
Total: -32.60 -11.70 -44.30 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000286886307.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 114.020 kcal
(2) G-P(sol) polarization free energy of solvation -32.599 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.421 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.699 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.723 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds