Wall clock time and date at job start Wed Apr 1 2020 06:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.99833 * 2 1 4 4 C 1.54330 * 109.87899 * 121.08922 * 2 1 3 5 5 C 1.55161 * 102.93879 * 141.60960 * 4 2 1 6 6 H 1.09002 * 110.99935 * 82.57540 * 5 4 2 7 7 N 1.46905 * 111.00072 * 206.38696 * 5 4 2 8 8 C 1.48533 * 110.99614 * 177.40506 * 7 5 4 9 9 C 1.54935 * 103.22704 * 159.72126 * 8 7 5 10 10 C 1.54600 * 102.92025 * 322.58578 * 9 8 7 11 11 C 1.47899 * 110.99682 * 294.80011 * 7 5 4 12 12 C 1.54903 * 101.58221 * 324.49866 * 5 4 2 13 13 N 1.47016 * 109.88377 * 238.89906 * 2 1 3 14 14 C 1.34772 * 125.64732 * 61.60070 * 13 2 1 15 15 O 1.21589 * 120.00287 * 0.03017 * 14 13 2 16 16 N 1.34786 * 119.99902 * 180.02562 * 14 13 2 17 17 C 1.40194 * 119.99992 * 179.97438 * 16 14 13 18 18 C 1.40407 * 125.96960 * 0.02562 * 17 16 14 19 19 C 1.35250 * 107.86138 * 179.97438 * 18 17 16 20 20 N 1.34962 * 107.86304 * 359.97438 * 19 18 17 21 21 C 1.46494 * 125.97929 * 180.02562 * 20 19 18 22 22 C 1.50700 * 109.46866 * 124.99874 * 21 20 19 23 23 H 1.07995 * 120.00271 * 0.02562 * 22 21 20 24 24 C 1.37882 * 119.99775 * 180.02562 * 22 21 20 25 25 N 1.31520 * 119.99997 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99992 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47145 * 89.99783 * 26 24 22 28 28 H 1.48494 * 109.47305 * 210.00316 * 26 24 22 29 29 H 1.48507 * 109.47130 * 330.00387 * 26 24 22 30 30 N 1.31202 * 125.97382 * 179.68993 * 17 16 14 31 31 H 1.09000 * 109.47208 * 298.91535 * 1 2 3 32 32 H 1.09009 * 109.46556 * 58.90613 * 1 2 3 33 33 H 1.08996 * 109.47201 * 178.90584 * 1 2 3 34 34 H 1.08999 * 110.72083 * 23.25053 * 4 2 1 35 35 H 1.08999 * 110.72103 * 259.97312 * 4 2 1 36 36 H 1.09001 * 110.66983 * 278.15646 * 8 7 5 37 37 H 1.09000 * 110.66796 * 41.28783 * 8 7 5 38 38 H 1.08996 * 110.72571 * 204.23043 * 9 8 7 39 39 H 1.09003 * 110.72536 * 80.94065 * 9 8 7 40 40 H 1.09000 * 110.30698 * 263.03797 * 10 9 8 41 41 H 1.08998 * 110.30754 * 140.87041 * 10 9 8 42 42 H 1.08999 * 109.92359 * 333.50623 * 11 7 5 43 43 H 1.08997 * 109.91830 * 94.81212 * 11 7 5 44 44 H 1.09002 * 110.36703 * 155.84429 * 12 5 4 45 45 H 1.08997 * 110.37304 * 278.05887 * 12 5 4 46 46 H 0.97002 * 119.99599 * 359.97438 * 16 14 13 47 47 H 1.08001 * 126.06759 * 0.02562 * 18 17 16 48 48 H 1.08004 * 126.06370 * 179.97438 * 19 18 17 49 49 H 1.08992 * 109.47529 * 245.00758 * 21 20 19 50 50 H 1.09002 * 109.46678 * 5.00273 * 21 20 19 51 51 H 0.97001 * 119.99469 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 1.2429 5 6 3.2875 -1.5142 0.6926 6 1 4.1653 -0.8688 0.6606 7 7 3.5542 -2.7224 1.4847 8 6 4.6958 -3.4873 0.9208 9 6 5.1564 -4.3658 2.1109 10 6 4.9724 -3.4268 3.3253 11 6 3.9463 -2.3736 2.8675 12 6 2.8145 -1.8795 -0.7365 13 7 2.0300 -0.7141 -1.1838 14 6 1.8073 -0.3623 -2.4656 15 8 1.1418 0.6233 -2.7187 16 7 2.3224 -1.1030 -3.4670 17 6 2.0903 -0.7373 -4.8003 18 6 1.3442 0.3703 -5.2338 19 6 1.3573 0.3758 -6.5862 20 7 2.0831 -0.6851 -6.9974 21 6 2.3531 -1.0560 -8.3887 22 6 3.8410 -1.1712 -8.5982 23 1 4.5178 -0.9871 -7.7770 24 6 4.3382 -1.5118 -9.8383 25 7 3.5141 -1.7355 -10.8385 26 14 6.1825 -1.6553 -10.0978 27 1 6.6150 -3.0480 -9.8171 28 1 6.5132 -1.3080 -11.5032 29 1 6.8857 -0.7241 -9.1792 30 7 2.5375 -1.3666 -5.8611 31 1 -0.3633 0.4969 0.8995 32 1 -0.3633 0.5308 -0.8801 33 1 -0.3633 -1.0274 -0.0196 34 1 1.3050 -1.4458 1.6184 35 1 2.3528 -0.0458 2.0202 36 1 4.3681 -4.1092 0.0877 37 1 5.4937 -2.8134 0.6086 38 1 6.2025 -4.6501 1.9983 39 1 4.5237 -5.2483 2.2065 40 1 5.9179 -2.9481 3.5800 41 1 4.5873 -3.9839 4.1793 42 1 4.3985 -1.3820 2.8864 43 1 3.0727 -2.3988 3.5187 44 1 3.6716 -2.0339 -1.3920 45 1 2.1902 -2.7727 -0.7129 46 1 2.8537 -1.8890 -3.2650 47 1 0.8484 1.0905 -4.5997 48 1 0.8730 1.1006 -7.2238 49 1 1.8800 -2.0131 -8.6080 50 1 1.9508 -0.2912 -9.0531 51 1 3.8639 -1.9755 -11.7108 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286886307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:18 Heat of formation + Delta-G solvation = 69.722577 kcal Electronic energy + Delta-G solvation = -30485.743116 eV Core-core repulsion = 26422.212485 eV Total energy + Delta-G solvation = -4063.530631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93582 -40.20241 -39.16758 -37.36545 -34.72761 -33.39957 -32.83735 -31.95759 -30.58883 -29.36498 -29.21844 -28.95240 -26.61473 -26.03361 -23.66096 -22.82746 -22.19377 -21.36655 -20.80366 -20.57568 -19.86836 -19.08378 -17.88382 -17.19643 -16.56988 -16.40889 -16.34854 -15.89522 -15.29493 -15.02957 -14.51433 -14.40396 -14.22607 -14.05217 -13.95643 -13.77451 -13.33302 -13.21878 -12.87159 -12.77830 -12.55394 -12.32352 -12.21763 -12.18437 -12.03284 -11.78384 -11.74271 -11.57984 -11.29006 -11.24567 -11.04468 -10.99552 -10.93908 -10.87554 -10.37542 -10.23926 -10.01204 -9.61886 -9.46120 -8.92831 -8.81653 -8.61245 -8.05924 -7.37051 -6.22413 -4.27219 2.28750 2.69649 3.13810 3.24579 3.27987 3.30267 3.36014 3.63065 3.87349 3.92377 4.14605 4.22407 4.31191 4.36668 4.43122 4.51749 4.68244 4.83358 4.85812 4.97506 5.07534 5.12603 5.15556 5.19412 5.26240 5.35790 5.40007 5.42788 5.45801 5.48917 5.54534 5.55289 5.61936 5.68994 5.75163 5.84860 5.91109 6.03529 6.20288 6.37964 6.38686 6.57865 6.59336 6.73356 6.86078 7.03856 7.14303 7.53500 7.71781 7.83949 7.98470 8.10191 8.62592 8.69894 8.83432 9.38134 10.86246 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011944 B = 0.002295 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.755639 B =12198.950180 C =14211.939474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.158 3.842 3 H 0.076 0.924 4 C -0.118 4.118 5 C 0.062 3.938 6 H 0.061 0.939 7 N -0.506 5.506 8 C 0.030 3.970 9 C -0.124 4.124 10 C -0.132 4.132 11 C 0.037 3.963 12 C 0.107 3.893 13 N -0.631 5.631 14 C 0.734 3.266 15 O -0.562 6.562 16 N -0.642 5.642 17 C 0.276 3.724 18 C -0.286 4.286 19 C 0.051 3.949 20 N -0.321 5.321 21 C 0.259 3.741 22 C -0.527 4.527 23 H 0.068 0.932 24 C 0.061 3.939 25 N -0.895 5.895 26 Si 0.908 3.092 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.273 1.273 30 N -0.308 5.308 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.405 0.595 47 H 0.161 0.839 48 H 0.167 0.833 49 H 0.044 0.956 50 H 0.057 0.943 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.739 -1.290 29.305 29.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.054 3.946 3 H 0.094 0.906 4 C -0.156 4.156 5 C -0.047 4.047 6 H 0.079 0.921 7 N -0.231 5.231 8 C -0.098 4.098 9 C -0.162 4.162 10 C -0.171 4.171 11 C -0.090 4.090 12 C -0.017 4.017 13 N -0.371 5.371 14 C 0.435 3.565 15 O -0.437 6.437 16 N -0.292 5.292 17 C 0.023 3.977 18 C -0.317 4.317 19 C -0.099 4.099 20 N -0.103 5.103 21 C 0.141 3.859 22 C -0.565 4.565 23 H 0.087 0.913 24 C -0.141 4.141 25 N -0.534 5.534 26 Si 0.735 3.265 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.198 1.198 30 N -0.139 5.139 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.240 0.760 47 H 0.178 0.822 48 H 0.185 0.815 49 H 0.062 0.938 50 H 0.075 0.925 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.040 -1.892 28.263 28.345 hybrid contribution 1.629 0.598 0.047 1.736 sum 0.589 -1.294 28.310 28.346 Atomic orbital electron populations 1.22162 0.94431 1.02488 1.03042 1.21370 0.94867 0.95872 0.82531 0.90583 1.22802 0.97291 0.99032 0.96487 1.22935 0.97696 0.91110 0.92989 0.92074 1.64779 1.37935 1.18626 1.01755 1.23307 0.91890 0.96468 0.98124 1.22476 1.01389 0.98398 0.93900 1.22414 0.98860 0.97102 0.98688 1.22836 0.98428 0.97482 0.90285 1.22224 0.95506 0.89646 0.94308 1.47500 1.56093 1.29875 1.03602 1.15052 0.80090 0.82535 0.78816 1.90854 1.43590 1.27704 1.81544 1.41423 1.55328 1.30593 1.01892 1.18779 0.99543 0.95967 0.83460 1.21511 1.12846 1.03865 0.93517 1.22549 0.98344 0.93497 0.95508 1.49044 1.36001 1.18549 1.06667 1.19725 0.98433 0.97700 0.70024 1.21261 0.90637 1.48215 0.96421 0.91336 1.24950 0.98962 0.94754 0.95475 1.69924 1.34809 1.46776 1.01876 0.86329 0.84205 0.78632 0.77331 1.20362 1.20997 1.19751 1.77316 1.24503 1.21557 0.90566 0.91840 0.90686 0.92444 0.89141 0.90150 0.89523 0.93423 0.90951 0.90567 0.91530 0.90917 0.93622 0.90108 0.91001 0.90110 0.76005 0.82204 0.81545 0.93770 0.92549 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.09 37.16 0.34 -1.25 16 2 C 0.16 1.52 3.46 -66.95 -0.23 1.29 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.12 -0.81 5.53 -24.89 -0.14 -0.95 16 5 C 0.06 0.46 2.35 -65.56 -0.15 0.31 16 6 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 7 N -0.51 -3.51 5.15 -219.94 -1.13 -4.64 16 8 C 0.03 0.19 5.99 -1.90 -0.01 0.18 16 9 C -0.12 -0.67 7.06 -24.87 -0.18 -0.85 16 10 C -0.13 -0.66 6.93 -25.37 -0.18 -0.84 16 11 C 0.04 0.21 6.11 -2.75 -0.02 0.20 16 12 C 0.11 0.96 5.61 -2.53 -0.01 0.95 16 13 N -0.63 -7.40 3.06 -168.69 -0.52 -7.91 16 14 C 0.73 11.65 8.25 -86.91 -0.72 10.93 16 15 O -0.56 -10.48 12.52 5.29 0.07 -10.42 16 16 N -0.64 -10.74 5.41 -15.51 -0.08 -10.82 16 17 C 0.28 5.77 8.11 -154.37 -1.25 4.51 16 18 C -0.29 -5.88 9.61 -39.83 -0.38 -6.27 16 19 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 20 N -0.32 -7.61 3.67 -62.56 -0.23 -7.84 16 21 C 0.26 6.66 6.26 -5.20 -0.03 6.63 16 22 C -0.53 -14.80 9.23 -34.44 -0.32 -15.12 16 23 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 24 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 25 N -0.90 -25.50 13.29 55.43 0.74 -24.77 16 26 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 30 N -0.31 -7.27 12.42 31.44 0.39 -6.88 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.94 6.90 -51.92 -0.36 0.59 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.63 7.85 -51.93 -0.41 0.22 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 37 H 0.05 0.32 8.01 -51.93 -0.42 -0.10 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.05 0.26 7.74 -51.93 -0.40 -0.15 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.62 7.30 -51.93 -0.38 0.24 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.40 5.74 7.30 -40.82 -0.30 5.45 16 47 H 0.16 3.23 5.91 -52.49 -0.31 2.92 16 48 H 0.17 2.79 8.06 -52.48 -0.42 2.37 16 49 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 50 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 51 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 405.85 15.07 6.12 6.12 Total: -1.00 -32.60 405.85 -11.70 -44.30 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -8.45 Total: 4.20 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -3.58 Total: 2.18 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -0.84 Total: -62.85 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.42 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.60 -11.70 -44.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286886307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.020 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds