Wall clock time and date at job start Wed Apr 1 2020 06:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.99833 * 2 1 4 4 C 1.54330 * 109.87899 * 121.08922 * 2 1 3 5 5 C 1.55161 * 102.93879 * 141.60960 * 4 2 1 6 6 H 1.09002 * 110.99935 * 82.57540 * 5 4 2 7 7 N 1.46905 * 111.00072 * 206.38696 * 5 4 2 8 8 C 1.48533 * 110.99614 * 177.40506 * 7 5 4 9 9 C 1.54935 * 103.22704 * 159.72126 * 8 7 5 10 10 C 1.54600 * 102.92025 * 322.58578 * 9 8 7 11 11 C 1.47899 * 110.99682 * 294.80011 * 7 5 4 12 12 C 1.54903 * 101.58221 * 324.49866 * 5 4 2 13 13 N 1.47016 * 109.88377 * 238.89906 * 2 1 3 14 14 C 1.34772 * 125.64732 * 61.60070 * 13 2 1 15 15 O 1.21589 * 120.00287 * 0.03017 * 14 13 2 16 16 N 1.34786 * 119.99902 * 180.02562 * 14 13 2 17 17 C 1.40194 * 119.99992 * 179.97438 * 16 14 13 18 18 C 1.40407 * 125.96960 * 0.02562 * 17 16 14 19 19 C 1.35250 * 107.86138 * 179.97438 * 18 17 16 20 20 N 1.34962 * 107.86304 * 359.97438 * 19 18 17 21 21 C 1.46494 * 125.97929 * 180.02562 * 20 19 18 22 22 C 1.50700 * 109.46866 * 124.99874 * 21 20 19 23 23 H 1.07995 * 120.00271 * 0.02562 * 22 21 20 24 24 C 1.37882 * 119.99775 * 180.02562 * 22 21 20 25 25 N 1.31520 * 119.99997 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99992 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47145 * 89.99783 * 26 24 22 28 28 H 1.48494 * 109.47305 * 210.00316 * 26 24 22 29 29 H 1.48507 * 109.47130 * 330.00387 * 26 24 22 30 30 N 1.31202 * 125.97382 * 179.68993 * 17 16 14 31 31 H 1.09000 * 109.47208 * 298.91535 * 1 2 3 32 32 H 1.09009 * 109.46556 * 58.90613 * 1 2 3 33 33 H 1.08996 * 109.47201 * 178.90584 * 1 2 3 34 34 H 1.08999 * 110.72083 * 23.25053 * 4 2 1 35 35 H 1.08999 * 110.72103 * 259.97312 * 4 2 1 36 36 H 1.09001 * 110.66983 * 278.15646 * 8 7 5 37 37 H 1.09000 * 110.66796 * 41.28783 * 8 7 5 38 38 H 1.08996 * 110.72571 * 204.23043 * 9 8 7 39 39 H 1.09003 * 110.72536 * 80.94065 * 9 8 7 40 40 H 1.09000 * 110.30698 * 263.03797 * 10 9 8 41 41 H 1.08998 * 110.30754 * 140.87041 * 10 9 8 42 42 H 1.08999 * 109.92359 * 333.50623 * 11 7 5 43 43 H 1.08997 * 109.91830 * 94.81212 * 11 7 5 44 44 H 1.09002 * 110.36703 * 155.84429 * 12 5 4 45 45 H 1.08997 * 110.37304 * 278.05887 * 12 5 4 46 46 H 0.97002 * 119.99599 * 359.97438 * 16 14 13 47 47 H 1.08001 * 126.06759 * 0.02562 * 18 17 16 48 48 H 1.08004 * 126.06370 * 179.97438 * 19 18 17 49 49 H 1.08992 * 109.47529 * 245.00758 * 21 20 19 50 50 H 1.09002 * 109.46678 * 5.00273 * 21 20 19 51 51 H 0.97001 * 119.99469 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 1.2429 5 6 3.2875 -1.5142 0.6926 6 1 4.1653 -0.8688 0.6606 7 7 3.5542 -2.7224 1.4847 8 6 4.6958 -3.4873 0.9208 9 6 5.1564 -4.3658 2.1109 10 6 4.9724 -3.4268 3.3253 11 6 3.9463 -2.3736 2.8675 12 6 2.8145 -1.8795 -0.7365 13 7 2.0300 -0.7141 -1.1838 14 6 1.8073 -0.3623 -2.4656 15 8 1.1418 0.6233 -2.7187 16 7 2.3224 -1.1030 -3.4670 17 6 2.0903 -0.7373 -4.8003 18 6 1.3442 0.3703 -5.2338 19 6 1.3573 0.3758 -6.5862 20 7 2.0831 -0.6851 -6.9974 21 6 2.3531 -1.0560 -8.3887 22 6 3.8410 -1.1712 -8.5982 23 1 4.5178 -0.9871 -7.7770 24 6 4.3382 -1.5118 -9.8383 25 7 3.5141 -1.7355 -10.8385 26 14 6.1825 -1.6553 -10.0978 27 1 6.6150 -3.0480 -9.8171 28 1 6.5132 -1.3080 -11.5032 29 1 6.8857 -0.7241 -9.1792 30 7 2.5375 -1.3666 -5.8611 31 1 -0.3633 0.4969 0.8995 32 1 -0.3633 0.5308 -0.8801 33 1 -0.3633 -1.0274 -0.0196 34 1 1.3050 -1.4458 1.6184 35 1 2.3528 -0.0458 2.0202 36 1 4.3681 -4.1092 0.0877 37 1 5.4937 -2.8134 0.6086 38 1 6.2025 -4.6501 1.9983 39 1 4.5237 -5.2483 2.2065 40 1 5.9179 -2.9481 3.5800 41 1 4.5873 -3.9839 4.1793 42 1 4.3985 -1.3820 2.8864 43 1 3.0727 -2.3988 3.5187 44 1 3.6716 -2.0339 -1.3920 45 1 2.1902 -2.7727 -0.7129 46 1 2.8537 -1.8890 -3.2650 47 1 0.8484 1.0905 -4.5997 48 1 0.8730 1.1006 -7.2238 49 1 1.8800 -2.0131 -8.6080 50 1 1.9508 -0.2912 -9.0531 51 1 3.8639 -1.9755 -11.7108 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286886307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:17 Heat of formation + Delta-G solvation = 49.704053 kcal Electronic energy + Delta-G solvation = -30486.611185 eV Core-core repulsion = 26422.212485 eV Total energy + Delta-G solvation = -4064.398699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.29988 -41.42099 -40.02315 -38.23789 -36.24376 -35.31864 -33.59921 -33.13590 -32.10351 -30.91240 -29.82758 -29.62237 -28.49582 -26.80942 -25.23363 -24.05835 -23.08072 -22.30996 -21.81233 -21.48681 -20.98832 -20.31515 -19.00160 -18.68266 -18.15349 -17.81248 -17.05281 -16.84416 -16.69648 -16.37639 -16.07985 -15.54912 -15.22859 -15.10624 -14.73366 -14.70857 -14.45938 -14.32633 -14.08086 -13.84469 -13.75153 -13.64438 -13.51278 -13.17810 -12.99584 -12.86959 -12.73538 -12.72183 -12.29715 -12.19133 -12.10711 -12.02600 -11.94930 -11.84199 -11.67077 -11.61934 -11.39275 -11.38584 -11.05033 -10.72219 -9.90330 -9.69642 -9.43128 -9.04929 -8.32758 -6.46855 1.01655 1.08809 1.37812 1.38562 1.50055 1.67497 1.98406 2.34751 2.37107 2.70463 2.98663 3.09192 3.29118 3.58602 3.76803 3.95950 3.97425 4.00516 4.11997 4.13903 4.25596 4.32175 4.39226 4.39884 4.53781 4.64026 4.66462 4.71121 4.75831 4.79104 4.86043 4.90294 4.94029 4.96212 4.98520 5.01302 5.01764 5.10572 5.12524 5.19068 5.27229 5.34788 5.35855 5.43373 5.56605 5.75618 5.85759 5.91966 5.95987 6.05721 6.28957 6.59230 6.67314 7.09098 7.22870 7.36227 8.74745 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011944 B = 0.002295 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.755639 B =12198.950180 C =14211.939474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.150 3.850 3 H 0.072 0.928 4 C -0.103 4.103 5 C 0.070 3.930 6 H 0.061 0.939 7 N -0.512 5.512 8 C 0.026 3.974 9 C -0.123 4.123 10 C -0.131 4.131 11 C 0.036 3.964 12 C 0.103 3.897 13 N -0.623 5.623 14 C 0.729 3.271 15 O -0.592 6.592 16 N -0.637 5.637 17 C 0.285 3.715 18 C -0.292 4.292 19 C 0.058 3.942 20 N -0.344 5.344 21 C 0.272 3.728 22 C -0.547 4.547 23 H 0.051 0.949 24 C 0.018 3.982 25 N -0.920 5.920 26 Si 0.972 3.028 27 H -0.272 1.272 28 H -0.272 1.272 29 H -0.273 1.273 30 N -0.348 5.348 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.049 0.951 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.415 0.585 47 H 0.166 0.834 48 H 0.202 0.798 49 H 0.022 0.978 50 H 0.059 0.941 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -1.235 31.443 31.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.090 0.910 4 C -0.141 4.141 5 C -0.040 4.040 6 H 0.078 0.922 7 N -0.237 5.237 8 C -0.102 4.102 9 C -0.161 4.161 10 C -0.169 4.169 11 C -0.092 4.092 12 C -0.020 4.020 13 N -0.361 5.361 14 C 0.431 3.569 15 O -0.470 6.470 16 N -0.289 5.289 17 C 0.029 3.971 18 C -0.324 4.324 19 C -0.091 4.091 20 N -0.126 5.126 21 C 0.154 3.846 22 C -0.585 4.585 23 H 0.070 0.930 24 C -0.183 4.183 25 N -0.559 5.559 26 Si 0.796 3.204 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.198 1.198 30 N -0.179 5.179 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.253 0.747 47 H 0.183 0.817 48 H 0.219 0.781 49 H 0.039 0.961 50 H 0.077 0.923 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.156 -1.857 30.468 30.525 hybrid contribution 1.296 0.584 -0.481 1.500 sum 1.139 -1.273 29.987 30.036 Atomic orbital electron populations 1.22097 0.94433 1.02202 1.02773 1.21628 0.94932 0.96032 0.82697 0.91009 1.22746 0.96887 0.99117 0.95365 1.22829 0.97831 0.91415 0.91894 0.92161 1.64788 1.38310 1.18225 1.02328 1.23341 0.91755 0.96562 0.98523 1.22473 1.01686 0.98219 0.93682 1.22420 0.98990 0.96869 0.98599 1.22901 0.98940 0.97871 0.89464 1.22392 0.95316 0.88644 0.95623 1.47550 1.55487 1.30501 1.02603 1.15210 0.79826 0.82131 0.79754 1.90820 1.44888 1.28985 1.82320 1.41445 1.55603 1.31196 1.00659 1.19064 0.98126 0.95357 0.84516 1.21675 1.13029 1.04016 0.93652 1.23153 0.96975 0.92839 0.96098 1.48823 1.37754 1.19967 1.06059 1.19343 0.97143 0.96633 0.71497 1.21389 0.91642 1.49101 0.96345 0.93030 1.25750 1.03471 0.94031 0.95015 1.69999 1.36689 1.46886 1.02325 0.85342 0.78691 0.78674 0.77667 1.19749 1.19644 1.19788 1.77237 1.26439 1.23020 0.91189 0.89262 0.93883 0.92550 0.88600 0.87905 0.89940 0.93670 0.90350 0.90814 0.91030 0.90225 0.93261 0.89463 0.90762 0.89810 0.74744 0.81655 0.78113 0.96055 0.92291 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.09 71.98 0.65 -2.23 16 2 C 0.15 2.68 3.46 45.34 0.16 2.83 16 3 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.10 -1.15 5.53 31.79 0.18 -0.97 16 5 C 0.07 0.90 2.35 46.31 0.11 1.01 16 6 H 0.06 0.82 8.07 -2.39 -0.02 0.80 16 7 N -0.51 -6.03 5.15 -849.76 -4.37 -10.41 16 8 C 0.03 0.30 5.99 86.65 0.52 0.82 16 9 C -0.12 -1.13 7.06 31.80 0.22 -0.91 16 10 C -0.13 -1.02 6.93 31.48 0.22 -0.80 16 11 C 0.04 0.32 6.11 86.45 0.53 0.85 16 12 C 0.10 1.74 5.61 86.85 0.49 2.22 16 13 N -0.62 -14.12 3.06 -805.88 -2.47 -16.59 16 14 C 0.73 23.10 8.25 179.05 1.48 24.58 16 15 O -0.59 -22.28 12.52 -4.00 -0.05 -22.33 16 16 N -0.64 -21.39 5.41 -321.23 -1.74 -23.13 16 17 C 0.28 12.01 8.11 133.32 1.08 13.09 16 18 C -0.29 -12.06 9.61 22.11 0.21 -11.84 16 19 C 0.06 2.37 11.44 83.52 0.96 3.33 16 20 N -0.34 -16.63 3.67 -351.86 -1.29 -17.92 16 21 C 0.27 14.40 6.26 85.63 0.54 14.93 16 22 C -0.55 -31.26 9.23 25.60 0.24 -31.03 16 23 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 24 C 0.02 0.98 5.46 84.66 0.46 1.45 16 25 N -0.92 -52.57 13.29 21.45 0.28 -52.28 16 26 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 29 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 30 N -0.35 -16.75 12.42 -54.44 -0.68 -17.42 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.04 1.08 6.90 -2.38 -0.02 1.06 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.03 7.85 -2.39 -0.02 1.02 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 1.00 8.11 -2.39 -0.02 0.98 16 37 H 0.04 0.54 8.01 -2.39 -0.02 0.53 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 41 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.05 0.41 7.74 -2.39 -0.02 0.40 16 43 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 1.22 7.30 -2.39 -0.02 1.21 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.42 11.81 7.30 -92.71 -0.68 11.13 16 47 H 0.17 6.68 5.91 -2.91 -0.02 6.66 16 48 H 0.20 6.50 8.06 -2.91 -0.02 6.48 16 49 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.06 3.04 8.07 -2.39 -0.02 3.02 16 51 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -70.71 405.85 -0.01 -70.72 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.25 Total: 26.04 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 8.03 Total: 17.33 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -10.26 Total: -137.75 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.05 Total: -22.33 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -70.71 -0.01 -70.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286886307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.424 kcal (2) G-P(sol) polarization free energy of solvation -70.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds