Wall clock time and date at job start Wed Apr 1 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.01467 * 2 1 4 4 C 1.50598 * 109.79316 * 121.10423 * 2 1 3 5 5 N 1.29730 * 128.69027 * 288.88167 * 4 2 1 6 6 N 1.28924 * 109.42757 * 179.63537 * 5 4 2 7 7 C 1.30825 * 109.74521 * 0.09412 * 6 5 4 8 8 C 1.50695 * 126.44310 * 180.15731 * 7 6 5 9 9 C 1.54263 * 110.03248 * 57.88915 * 8 7 6 10 10 C 1.54967 * 104.15972 * 217.13887 * 9 8 7 11 11 C 1.54880 * 102.77958 * 37.88477 * 10 9 8 12 12 C 1.53873 * 110.03559 * 300.67131 * 8 7 6 13 13 N 1.34800 * 107.11587 * 0.14618 * 7 6 5 14 14 C 1.46215 * 128.59926 * 179.52778 * 13 7 6 15 15 C 1.53341 * 109.17747 * 161.66464 * 14 13 7 16 16 N 1.47073 * 109.24822 * 45.62500 * 15 14 13 17 17 C 1.34784 * 120.94434 * 116.43357 * 16 15 14 18 18 O 1.21586 * 119.99757 * 4.90875 * 17 16 15 19 19 N 1.34777 * 119.99849 * 184.91266 * 17 16 15 20 20 C 1.46505 * 119.99616 * 174.90228 * 19 17 16 21 21 C 1.52995 * 109.46819 * 180.02562 * 20 19 17 22 22 C 1.50696 * 109.47347 * 180.02562 * 21 20 19 23 23 H 1.08002 * 119.99883 * 359.97438 * 22 21 20 24 24 C 1.37879 * 120.00617 * 180.02562 * 22 21 20 25 25 N 1.31518 * 119.99570 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00358 * 179.97438 * 24 22 21 27 27 H 1.48510 * 109.46910 * 59.99724 * 26 24 22 28 28 H 1.48500 * 109.47214 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.47228 * 300.00077 * 26 24 22 30 30 H 1.08998 * 109.47502 * 181.24895 * 1 2 3 31 31 H 1.08997 * 109.47010 * 301.24897 * 1 2 3 32 32 H 1.08998 * 109.46675 * 61.24897 * 1 2 3 33 33 H 1.08998 * 110.02031 * 179.27813 * 8 7 6 34 34 H 1.09009 * 110.48464 * 335.78377 * 9 8 7 35 35 H 1.08994 * 110.49167 * 98.42288 * 9 8 7 36 36 H 1.09001 * 110.71559 * 279.56596 * 10 9 8 37 37 H 1.09000 * 110.92320 * 156.29395 * 10 9 8 38 38 H 1.08995 * 110.48820 * 203.40499 * 11 10 9 39 39 H 1.09004 * 110.48864 * 80.76185 * 11 10 9 40 40 H 1.08996 * 110.03524 * 238.57358 * 12 8 7 41 41 H 1.09008 * 110.03021 * 359.97438 * 12 8 7 42 42 H 1.08996 * 109.52529 * 41.75599 * 14 13 7 43 43 H 1.09003 * 109.56897 * 281.59839 * 14 13 7 44 44 H 1.08993 * 109.50529 * 285.69333 * 15 14 13 45 45 H 1.08995 * 109.54175 * 165.58530 * 15 14 13 46 46 H 0.96993 * 120.00106 * 354.90549 * 19 17 16 47 47 H 1.08996 * 109.47064 * 59.99953 * 20 19 17 48 48 H 1.08993 * 109.46843 * 299.99752 * 20 19 17 49 49 H 1.08999 * 109.47239 * 299.99984 * 21 20 19 50 50 H 1.09001 * 109.47402 * 59.99647 * 21 20 19 51 51 H 0.96993 * 119.99530 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0400 -0.7320 1.2133 5 7 2.0063 -0.3632 2.4566 6 7 2.5410 -1.2787 3.1901 7 6 2.9402 -2.2712 2.4372 8 6 3.6118 -3.5363 2.9056 9 6 2.7114 -4.2671 3.9229 10 6 3.7057 -4.8511 4.9582 11 6 4.7711 -3.7334 5.0783 12 6 4.9210 -3.1975 3.6396 13 7 2.6376 -1.9497 1.1635 14 6 2.8850 -2.7190 -0.0550 15 6 1.9839 -2.1893 -1.1769 16 7 2.0335 -0.7194 -1.1854 17 6 2.5301 -0.0488 -2.2439 18 8 2.8623 -0.6534 -3.2451 19 7 2.6584 1.2918 -2.1925 20 6 3.3005 2.0091 -3.2969 21 6 3.3182 3.5078 -2.9897 22 6 3.9780 4.2457 -4.1259 23 1 4.3481 3.7003 -4.9814 24 6 4.1102 5.6172 -4.0729 25 7 3.6599 6.2814 -3.0309 26 14 4.9287 6.5317 -5.4810 27 1 4.1691 6.2926 -6.7345 28 1 4.9458 7.9864 -5.1829 29 1 6.3214 6.0432 -5.6454 30 1 -0.3634 -1.0274 0.0224 31 1 -0.3633 0.5331 0.8786 32 1 -0.3632 0.4943 -0.9010 33 1 3.8180 -4.1862 2.0552 34 1 2.0300 -3.5646 4.4029 35 1 2.1546 -5.0666 3.4344 36 1 4.1530 -5.7728 4.5858 37 1 3.2148 -5.0214 5.9163 38 1 5.7165 -4.1440 5.4329 39 1 4.4229 -2.9444 5.7449 40 1 5.7625 -3.6834 3.1458 41 1 5.0709 -2.1179 3.6566 42 1 2.6611 -3.7702 0.1262 43 1 3.9299 -2.6142 -0.3471 44 1 0.9588 -2.5178 -1.0061 45 1 2.3334 -2.5709 -2.1361 46 1 2.3258 1.7817 -1.4243 47 1 2.7434 1.8330 -4.2170 48 1 4.3229 1.6511 -3.4169 49 1 2.2958 3.8661 -2.8693 50 1 3.8754 3.6836 -2.0695 51 1 3.7525 7.2461 -2.9938 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288114874.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:02 Heat of formation + Delta-G solvation = 41.826381 kcal Electronic energy + Delta-G solvation = -31053.263730 eV Core-core repulsion = 26988.523429 eV Total energy + Delta-G solvation = -4064.740301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.58689 -40.23316 -38.44921 -37.22415 -35.26814 -34.84583 -32.87566 -32.16116 -31.26653 -29.97971 -29.09553 -28.76260 -28.06592 -25.23902 -24.35432 -23.95128 -22.71484 -21.36403 -21.04343 -20.92214 -19.88539 -19.14825 -18.04305 -17.63117 -16.89711 -16.62068 -16.29290 -15.80138 -15.67178 -15.49183 -14.74669 -14.65943 -14.54963 -14.22006 -13.97878 -13.75672 -13.71762 -13.38461 -13.03329 -12.91777 -12.51448 -12.29204 -12.15221 -12.07090 -11.90958 -11.69647 -11.54134 -11.48493 -11.46193 -11.22534 -11.19938 -11.04467 -10.93623 -10.67658 -10.52556 -10.38399 -10.34955 -10.12782 -9.61789 -9.31656 -9.29023 -9.08296 -8.55696 -8.36859 -6.10215 -4.13505 1.54782 2.01474 2.53479 2.65351 3.23792 3.30418 3.34638 3.37392 3.72753 3.86880 3.91668 4.05117 4.15638 4.21824 4.41158 4.46290 4.53846 4.60388 4.71560 4.77461 4.85934 5.01902 5.09211 5.13228 5.16910 5.25663 5.26672 5.28002 5.29912 5.41578 5.44881 5.54807 5.55221 5.68534 5.70401 5.80287 5.83153 5.89580 5.94978 6.00902 6.05909 6.20950 6.31309 6.56932 6.68786 6.82139 6.86888 7.50583 7.58940 7.87533 8.06192 8.26461 8.54899 8.69283 8.92089 9.51280 11.01288 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.002175 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.058823 B =12869.631446 C =13330.514196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.228 3.772 3 H 0.119 0.881 4 C 0.169 3.831 5 N -0.277 5.277 6 N -0.290 5.290 7 C 0.187 3.813 8 C -0.004 4.004 9 C -0.113 4.113 10 C -0.123 4.123 11 C -0.122 4.122 12 C -0.113 4.113 13 N -0.464 5.464 14 C 0.086 3.914 15 C 0.118 3.882 16 N -0.639 5.639 17 C 0.710 3.290 18 O -0.587 6.587 19 N -0.734 5.734 20 C 0.138 3.862 21 C 0.013 3.987 22 C -0.523 4.523 23 H 0.059 0.941 24 C 0.059 3.941 25 N -0.893 5.893 26 Si 0.898 3.102 27 H -0.276 1.276 28 H -0.287 1.287 29 H -0.276 1.276 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.123 0.877 46 H 0.394 0.606 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.023 0.977 50 H 0.022 0.978 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 -24.722 13.886 28.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.122 3.878 3 H 0.137 0.863 4 C -0.100 4.100 5 N -0.116 5.116 6 N -0.130 5.130 7 C -0.080 4.080 8 C -0.025 4.025 9 C -0.151 4.151 10 C -0.160 4.160 11 C -0.159 4.159 12 C -0.151 4.151 13 N -0.154 5.154 14 C -0.038 4.038 15 C -0.007 4.007 16 N -0.379 5.379 17 C 0.412 3.588 18 O -0.465 6.465 19 N -0.388 5.388 20 C 0.016 3.984 21 C -0.025 4.025 22 C -0.561 4.561 23 H 0.077 0.923 24 C -0.143 4.143 25 N -0.531 5.531 26 Si 0.725 3.275 27 H -0.201 1.201 28 H -0.212 1.212 29 H -0.201 1.201 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.098 0.902 45 H 0.141 0.859 46 H 0.229 0.771 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.042 0.958 50 H 0.040 0.960 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.746 -24.097 14.366 28.303 hybrid contribution 0.593 0.098 -1.489 1.606 sum -3.153 -23.999 12.876 27.417 Atomic orbital electron populations 1.22124 0.91995 1.03124 1.04146 1.19578 0.95178 0.95281 0.77806 0.86326 1.24622 1.01431 0.86755 0.97191 1.74085 1.17577 1.21200 0.98737 1.74454 1.14376 0.98730 1.25423 1.24646 1.02876 0.99985 0.80518 1.20269 0.94983 0.88428 0.98850 1.22447 0.97606 0.99265 0.95794 1.22492 0.96462 0.98039 0.99033 1.22337 0.98962 0.98212 0.96407 1.22169 0.95013 1.02269 0.95698 1.45912 1.44628 1.16743 1.08129 1.22521 1.02763 0.96201 0.82362 1.21676 0.99555 0.79928 0.99506 1.47544 1.67497 1.05919 1.16920 1.15845 0.78103 0.82594 0.82307 1.90898 1.57012 1.67929 1.30641 1.45751 1.63532 1.04517 1.25041 1.21679 0.95753 0.94044 0.86928 1.19326 0.98016 0.87158 0.97964 1.20975 1.38962 0.91891 1.04309 0.92275 1.24999 0.95508 0.97693 0.96080 1.69944 1.46135 1.07979 1.29062 0.86564 0.80017 0.78506 0.82385 1.20102 1.21234 1.20131 0.92132 0.89862 0.90364 0.89531 0.90125 0.91363 0.91412 0.91113 0.91460 0.90928 0.91179 0.90863 0.87687 0.88677 0.90192 0.85912 0.77086 0.92374 0.92712 0.95838 0.95961 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.42 37.16 0.35 -1.13 16 2 C 0.23 2.65 3.19 -68.57 -0.22 2.43 16 3 H 0.12 1.43 5.89 -51.93 -0.31 1.13 16 4 C 0.17 2.17 7.14 -155.48 -1.11 1.06 16 5 N -0.28 -4.19 12.21 32.69 0.40 -3.79 16 6 N -0.29 -4.16 12.02 32.71 0.39 -3.76 16 7 C 0.19 2.10 6.28 -155.37 -0.98 1.12 16 8 C 0.00 -0.03 3.34 -90.66 -0.30 -0.34 16 9 C -0.11 -0.77 6.36 -25.03 -0.16 -0.93 16 10 C -0.12 -0.70 6.91 -24.70 -0.17 -0.87 16 11 C -0.12 -0.81 6.83 -25.08 -0.17 -0.98 16 12 C -0.11 -0.87 6.45 -25.62 -0.17 -1.04 16 13 N -0.46 -5.04 3.11 -110.96 -0.35 -5.38 16 14 C 0.09 0.67 6.70 -4.02 -0.03 0.64 16 15 C 0.12 1.07 6.32 -3.55 -0.02 1.05 16 16 N -0.64 -7.89 2.64 -171.73 -0.45 -8.34 16 17 C 0.71 11.66 8.31 -86.91 -0.72 10.94 16 18 O -0.59 -11.47 15.79 5.29 0.08 -11.39 16 19 N -0.73 -12.66 5.46 -65.23 -0.36 -13.02 16 20 C 0.14 2.88 5.62 -4.04 -0.02 2.86 16 21 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 22 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 23 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 24 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 25 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 26 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 30 H 0.06 0.54 7.55 -51.93 -0.39 0.14 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.50 7.40 -51.93 -0.38 0.11 16 34 H 0.08 0.71 7.69 -51.92 -0.40 0.31 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.74 7.66 -51.92 -0.40 0.34 16 42 H 0.11 0.47 7.83 -51.93 -0.41 0.07 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.59 7.55 -51.93 -0.39 0.20 16 45 H 0.12 1.17 7.01 -51.93 -0.36 0.81 16 46 H 0.39 6.09 6.07 -40.82 -0.25 5.84 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 404.43 15.07 6.09 6.09 Total: -1.00 -34.12 404.43 -11.06 -45.19 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.33 Total: 1.49 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -4.27 Total: 1.89 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.37 Total: -59.55 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.12 -11.06 -45.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288114874.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.014 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds