Wall clock time and date at job start Wed Apr 1 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.01467 * 2 1 4 4 C 1.50598 * 109.79316 * 121.10423 * 2 1 3 5 5 N 1.29730 * 128.69027 * 288.88167 * 4 2 1 6 6 N 1.28924 * 109.42757 * 179.63537 * 5 4 2 7 7 C 1.30825 * 109.74521 * 0.09412 * 6 5 4 8 8 C 1.50695 * 126.44310 * 180.15731 * 7 6 5 9 9 C 1.54263 * 110.03248 * 57.88915 * 8 7 6 10 10 C 1.54967 * 104.15972 * 217.13887 * 9 8 7 11 11 C 1.54880 * 102.77958 * 37.88477 * 10 9 8 12 12 C 1.53873 * 110.03559 * 300.67131 * 8 7 6 13 13 N 1.34800 * 107.11587 * 0.14618 * 7 6 5 14 14 C 1.46215 * 128.59926 * 179.52778 * 13 7 6 15 15 C 1.53341 * 109.17747 * 161.66464 * 14 13 7 16 16 N 1.47073 * 109.24822 * 45.62500 * 15 14 13 17 17 C 1.34784 * 120.94434 * 116.43357 * 16 15 14 18 18 O 1.21586 * 119.99757 * 4.90875 * 17 16 15 19 19 N 1.34777 * 119.99849 * 184.91266 * 17 16 15 20 20 C 1.46505 * 119.99616 * 174.90228 * 19 17 16 21 21 C 1.52995 * 109.46819 * 180.02562 * 20 19 17 22 22 C 1.50696 * 109.47347 * 180.02562 * 21 20 19 23 23 H 1.08002 * 119.99883 * 359.97438 * 22 21 20 24 24 C 1.37879 * 120.00617 * 180.02562 * 22 21 20 25 25 N 1.31518 * 119.99570 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00358 * 179.97438 * 24 22 21 27 27 H 1.48510 * 109.46910 * 59.99724 * 26 24 22 28 28 H 1.48500 * 109.47214 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.47228 * 300.00077 * 26 24 22 30 30 H 1.08998 * 109.47502 * 181.24895 * 1 2 3 31 31 H 1.08997 * 109.47010 * 301.24897 * 1 2 3 32 32 H 1.08998 * 109.46675 * 61.24897 * 1 2 3 33 33 H 1.08998 * 110.02031 * 179.27813 * 8 7 6 34 34 H 1.09009 * 110.48464 * 335.78377 * 9 8 7 35 35 H 1.08994 * 110.49167 * 98.42288 * 9 8 7 36 36 H 1.09001 * 110.71559 * 279.56596 * 10 9 8 37 37 H 1.09000 * 110.92320 * 156.29395 * 10 9 8 38 38 H 1.08995 * 110.48820 * 203.40499 * 11 10 9 39 39 H 1.09004 * 110.48864 * 80.76185 * 11 10 9 40 40 H 1.08996 * 110.03524 * 238.57358 * 12 8 7 41 41 H 1.09008 * 110.03021 * 359.97438 * 12 8 7 42 42 H 1.08996 * 109.52529 * 41.75599 * 14 13 7 43 43 H 1.09003 * 109.56897 * 281.59839 * 14 13 7 44 44 H 1.08993 * 109.50529 * 285.69333 * 15 14 13 45 45 H 1.08995 * 109.54175 * 165.58530 * 15 14 13 46 46 H 0.96993 * 120.00106 * 354.90549 * 19 17 16 47 47 H 1.08996 * 109.47064 * 59.99953 * 20 19 17 48 48 H 1.08993 * 109.46843 * 299.99752 * 20 19 17 49 49 H 1.08999 * 109.47239 * 299.99984 * 21 20 19 50 50 H 1.09001 * 109.47402 * 59.99647 * 21 20 19 51 51 H 0.96993 * 119.99530 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0400 -0.7320 1.2133 5 7 2.0063 -0.3632 2.4566 6 7 2.5410 -1.2787 3.1901 7 6 2.9402 -2.2712 2.4372 8 6 3.6118 -3.5363 2.9056 9 6 2.7114 -4.2671 3.9229 10 6 3.7057 -4.8511 4.9582 11 6 4.7711 -3.7334 5.0783 12 6 4.9210 -3.1975 3.6396 13 7 2.6376 -1.9497 1.1635 14 6 2.8850 -2.7190 -0.0550 15 6 1.9839 -2.1893 -1.1769 16 7 2.0335 -0.7194 -1.1854 17 6 2.5301 -0.0488 -2.2439 18 8 2.8623 -0.6534 -3.2451 19 7 2.6584 1.2918 -2.1925 20 6 3.3005 2.0091 -3.2969 21 6 3.3182 3.5078 -2.9897 22 6 3.9780 4.2457 -4.1259 23 1 4.3481 3.7003 -4.9814 24 6 4.1102 5.6172 -4.0729 25 7 3.6599 6.2814 -3.0309 26 14 4.9287 6.5317 -5.4810 27 1 4.1691 6.2926 -6.7345 28 1 4.9458 7.9864 -5.1829 29 1 6.3214 6.0432 -5.6454 30 1 -0.3634 -1.0274 0.0224 31 1 -0.3633 0.5331 0.8786 32 1 -0.3632 0.4943 -0.9010 33 1 3.8180 -4.1862 2.0552 34 1 2.0300 -3.5646 4.4029 35 1 2.1546 -5.0666 3.4344 36 1 4.1530 -5.7728 4.5858 37 1 3.2148 -5.0214 5.9163 38 1 5.7165 -4.1440 5.4329 39 1 4.4229 -2.9444 5.7449 40 1 5.7625 -3.6834 3.1458 41 1 5.0709 -2.1179 3.6566 42 1 2.6611 -3.7702 0.1262 43 1 3.9299 -2.6142 -0.3471 44 1 0.9588 -2.5178 -1.0061 45 1 2.3334 -2.5709 -2.1361 46 1 2.3258 1.7817 -1.4243 47 1 2.7434 1.8330 -4.2170 48 1 4.3229 1.6511 -3.4169 49 1 2.2958 3.8661 -2.8693 50 1 3.8754 3.6836 -2.0695 51 1 3.7525 7.2461 -2.9938 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288114874.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:01 Heat of formation + Delta-G solvation = 21.827102 kcal Electronic energy + Delta-G solvation = -31054.130964 eV Core-core repulsion = 26988.523429 eV Total energy + Delta-G solvation = -4065.607535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.50437 -41.45691 -39.04719 -38.30537 -36.71589 -35.96966 -34.79191 -33.12653 -32.17318 -31.47442 -29.87227 -29.63369 -28.82354 -26.88390 -25.37058 -25.06784 -23.50434 -22.97374 -22.25971 -21.52965 -20.64499 -20.27548 -19.11435 -18.63925 -18.35730 -17.77527 -17.35373 -16.89981 -16.52622 -16.49401 -16.34030 -15.89582 -15.58881 -15.28543 -15.23117 -14.86220 -14.43250 -14.31283 -14.27446 -13.99102 -13.83217 -13.30970 -13.23766 -12.93877 -12.92404 -12.82004 -12.57079 -12.53793 -12.43775 -12.39595 -12.25458 -12.02437 -11.94138 -11.85658 -11.71147 -11.53775 -11.45356 -11.37303 -11.25887 -11.16723 -10.60995 -10.39997 -10.13320 -9.81929 -8.23806 -6.34542 0.66708 1.10315 1.41935 1.44316 1.51621 1.54693 1.68502 1.94611 2.39002 2.67104 2.88575 3.11007 3.13161 3.30140 3.55481 3.67021 3.74115 3.85769 3.89439 4.01232 4.04127 4.21271 4.35710 4.46587 4.49221 4.50573 4.50863 4.54906 4.57119 4.58261 4.65226 4.73081 4.80364 4.84297 4.86032 4.94601 4.97330 5.06934 5.08314 5.18876 5.23552 5.24788 5.26364 5.35735 5.44956 5.50998 5.57108 5.60481 5.78515 5.82528 6.15295 6.74528 6.79439 7.34551 7.36460 7.59890 8.87868 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.002175 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.058823 B =12869.631446 C =13330.514196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.229 3.771 3 H 0.108 0.892 4 C 0.163 3.837 5 N -0.314 5.314 6 N -0.330 5.330 7 C 0.199 3.801 8 C -0.005 4.005 9 C -0.110 4.110 10 C -0.116 4.116 11 C -0.123 4.123 12 C -0.113 4.113 13 N -0.463 5.463 14 C 0.085 3.915 15 C 0.112 3.888 16 N -0.630 5.630 17 C 0.713 3.287 18 O -0.618 6.618 19 N -0.735 5.735 20 C 0.160 3.840 21 C 0.023 3.977 22 C -0.545 4.545 23 H 0.062 0.938 24 C 0.005 3.995 25 N -0.927 5.927 26 Si 0.966 3.034 27 H -0.267 1.267 28 H -0.283 1.283 29 H -0.268 1.268 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.041 0.959 42 H 0.150 0.850 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.122 0.878 46 H 0.402 0.598 47 H 0.052 0.948 48 H 0.046 0.954 49 H 0.009 0.991 50 H 0.003 0.997 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.539 -27.450 13.271 30.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.123 3.877 3 H 0.126 0.874 4 C -0.107 4.107 5 N -0.153 5.153 6 N -0.170 5.170 7 C -0.069 4.069 8 C -0.026 4.026 9 C -0.148 4.148 10 C -0.153 4.153 11 C -0.160 4.160 12 C -0.152 4.152 13 N -0.153 5.153 14 C -0.038 4.038 15 C -0.011 4.011 16 N -0.368 5.368 17 C 0.415 3.585 18 O -0.498 6.498 19 N -0.390 5.390 20 C 0.036 3.964 21 C -0.015 4.015 22 C -0.584 4.584 23 H 0.080 0.920 24 C -0.193 4.193 25 N -0.566 5.566 26 Si 0.790 3.210 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.193 1.193 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.060 0.940 42 H 0.168 0.832 43 H 0.113 0.887 44 H 0.123 0.877 45 H 0.140 0.860 46 H 0.239 0.761 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.027 0.973 50 H 0.022 0.978 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.539 -26.864 13.790 30.403 hybrid contribution 0.525 0.893 -1.220 1.600 sum -3.015 -25.971 12.570 29.010 Atomic orbital electron populations 1.22063 0.90187 1.03987 1.04273 1.19632 0.96425 0.94537 0.77124 0.87448 1.24685 1.01661 0.87592 0.96774 1.73989 1.18975 1.22400 0.99921 1.74374 1.16080 0.99891 1.26621 1.25268 1.01212 1.00129 0.80305 1.20559 0.94613 0.87255 1.00152 1.22428 0.97445 0.99125 0.95851 1.22487 0.95669 0.98167 0.98997 1.22341 1.00088 0.98189 0.95427 1.22173 0.95836 1.00451 0.96690 1.46100 1.44008 1.16270 1.08914 1.22786 1.02450 0.97997 0.80544 1.21988 1.01450 0.77500 1.00118 1.47495 1.66214 1.07363 1.15753 1.15828 0.77912 0.81978 0.82833 1.90876 1.58409 1.68388 1.32135 1.45489 1.63781 1.05264 1.24506 1.21135 0.95531 0.91977 0.87710 1.19130 0.96441 0.89467 0.96454 1.21417 1.39161 0.92647 1.05132 0.91990 1.25900 0.96066 0.98681 0.98699 1.70062 1.47276 1.08321 1.30967 0.85488 0.79181 0.77101 0.79215 1.19152 1.20797 1.19333 0.90880 0.89754 0.90154 0.86389 0.92760 0.89277 0.89342 0.90797 0.90093 0.92910 0.89273 0.94043 0.83235 0.88704 0.87742 0.85997 0.76148 0.93008 0.93538 0.97270 0.97819 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.42 71.98 0.68 -1.98 16 2 C 0.23 5.23 3.19 44.02 0.14 5.37 16 3 H 0.11 2.67 5.89 -2.39 -0.01 2.66 16 4 C 0.16 4.13 7.14 138.10 0.99 5.12 16 5 N -0.31 -9.74 12.21 -50.49 -0.62 -10.36 16 6 N -0.33 -9.68 12.02 -50.42 -0.61 -10.29 16 7 C 0.20 4.26 6.28 138.11 0.87 5.12 16 8 C -0.01 -0.07 3.34 -10.82 -0.04 -0.10 16 9 C -0.11 -1.26 6.36 31.69 0.20 -1.06 16 10 C -0.12 -1.03 6.91 31.91 0.22 -0.81 16 11 C -0.12 -1.49 6.83 31.66 0.22 -1.27 16 12 C -0.11 -1.59 6.45 31.32 0.20 -1.39 16 13 N -0.46 -9.29 3.11 -504.97 -1.57 -10.86 16 14 C 0.08 1.06 6.70 86.55 0.58 1.64 16 15 C 0.11 1.76 6.32 86.38 0.55 2.30 16 16 N -0.63 -14.84 2.64 -815.50 -2.15 -16.99 16 17 C 0.71 23.13 8.31 179.05 1.49 24.61 16 18 O -0.62 -23.81 15.79 -3.99 -0.06 -23.87 16 19 N -0.73 -25.68 5.46 -478.54 -2.61 -28.29 16 20 C 0.16 6.81 5.62 86.38 0.49 7.29 16 21 C 0.02 1.14 5.09 29.85 0.15 1.29 16 22 C -0.55 -30.29 9.11 25.60 0.23 -30.06 16 23 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 24 C 0.01 0.30 5.46 84.65 0.46 0.76 16 25 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 26 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 29 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 30 H 0.07 1.15 7.55 -2.39 -0.02 1.13 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.12 0.82 7.40 -2.39 -0.02 0.80 16 34 H 0.05 0.93 7.69 -2.38 -0.02 0.91 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.04 0.85 7.66 -2.38 -0.02 0.83 16 42 H 0.15 0.58 7.83 -2.39 -0.02 0.56 16 43 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.10 1.18 7.55 -2.39 -0.02 1.16 16 45 H 0.12 2.04 7.01 -2.39 -0.02 2.02 16 46 H 0.40 12.76 6.07 -92.71 -0.56 12.20 16 47 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 51 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -76.00 404.43 2.49 -73.51 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.37 Total: 19.15 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 7.42 Total: 16.84 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -7.27 Total: -131.26 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.06 Total: -23.87 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -76.00 2.49 -73.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288114874.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.341 kcal (2) G-P(sol) polarization free energy of solvation -75.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds