Wall clock time and date at job start Wed Apr 1 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.74613 * 2 1 4 4 C 1.50765 * 109.79386 * 239.28193 * 2 1 3 5 5 N 1.29634 * 129.27445 * 44.63864 * 4 2 1 6 6 N 1.28979 * 109.47874 * 180.16303 * 5 4 2 7 7 C 1.30920 * 109.75557 * 359.95013 * 6 5 4 8 8 C 1.50698 * 126.48555 * 179.97438 * 7 6 5 9 9 C 1.54266 * 110.03173 * 57.86986 * 8 7 6 10 10 C 1.54975 * 104.16002 * 217.13562 * 9 8 7 11 11 C 1.54893 * 102.77647 * 37.88690 * 10 9 8 12 12 C 1.53875 * 110.03633 * 300.65004 * 8 7 6 13 13 N 1.34419 * 107.03243 * 359.93528 * 7 6 5 14 14 C 1.46311 * 129.75853 * 180.28383 * 13 7 6 15 15 C 1.53462 * 108.17437 * 163.57107 * 14 13 7 16 16 N 1.46966 * 109.74133 * 49.60633 * 15 14 13 17 17 C 1.46901 * 111.00343 * 165.12683 * 16 15 14 18 18 C 1.50701 * 109.46921 * 294.27454 * 17 16 15 19 19 O 1.21280 * 119.99781 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.46497 * 119.99566 * 180.02562 * 20 18 17 22 22 C 1.50703 * 109.46835 * 180.02562 * 21 20 18 23 23 H 1.07995 * 120.00280 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99788 * 180.02562 * 22 21 20 25 25 N 1.31511 * 120.00327 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99743 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47061 * 60.00295 * 26 24 22 28 28 H 1.48505 * 109.46988 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47116 * 300.00069 * 26 24 22 30 30 H 1.09000 * 109.46996 * 299.30498 * 1 2 3 31 31 H 1.08989 * 109.47183 * 59.30873 * 1 2 3 32 32 H 1.09005 * 109.46987 * 179.31128 * 1 2 3 33 33 H 1.08999 * 110.01812 * 179.25933 * 8 7 6 34 34 H 1.08995 * 110.48695 * 335.78194 * 9 8 7 35 35 H 1.08995 * 110.48866 * 98.42757 * 9 8 7 36 36 H 1.09000 * 110.71792 * 279.57412 * 10 9 8 37 37 H 1.08997 * 110.76180 * 156.21671 * 10 9 8 38 38 H 1.08992 * 110.48790 * 203.40805 * 11 10 9 39 39 H 1.08997 * 110.48724 * 80.75684 * 11 10 9 40 40 H 1.08996 * 110.03570 * 238.57249 * 12 8 7 41 41 H 1.09003 * 110.02941 * 0.02562 * 12 8 7 42 42 H 1.08995 * 109.72405 * 283.24834 * 14 13 7 43 43 H 1.08997 * 109.72074 * 43.86679 * 14 13 7 44 44 H 1.08994 * 109.42917 * 289.52179 * 15 14 13 45 45 H 1.09003 * 109.42602 * 169.68385 * 15 14 13 46 46 H 1.09002 * 109.47401 * 174.27482 * 17 16 15 47 47 H 1.09001 * 109.46874 * 54.27494 * 17 16 15 48 48 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 49 49 H 1.09001 * 109.47487 * 300.00114 * 21 20 18 50 50 H 1.09002 * 109.47182 * 60.00342 * 21 20 18 51 51 H 0.97000 * 120.00354 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0406 -0.7246 -1.2195 5 7 1.6466 -0.6364 -2.4514 6 7 2.3477 -1.4323 -3.1852 7 6 3.2231 -2.0625 -2.4432 8 6 4.2307 -3.0792 -2.9144 9 6 5.1377 -2.4611 -3.9985 10 6 5.3776 -3.6207 -4.9982 11 6 4.0040 -4.3359 -5.0294 12 6 3.5105 -4.2709 -3.5692 13 7 3.0536 -1.6304 -1.1817 14 6 3.7693 -2.0026 0.0390 15 6 3.4768 -0.9409 1.1078 16 7 2.0282 -0.7081 1.1929 17 6 1.6834 0.0215 2.4204 18 6 1.9857 -0.8406 3.6189 19 8 2.4438 -1.9531 3.4655 20 7 1.7480 -0.3750 4.8612 21 6 2.0425 -1.2129 6.0262 22 6 1.6886 -0.4645 7.2855 23 1 1.2844 0.5351 7.2241 24 6 1.8810 -1.0559 8.5160 25 7 2.3737 -2.2730 8.5909 26 14 1.4430 -0.1280 10.0770 27 1 -0.0032 0.2093 10.0631 28 1 1.7414 -0.9774 11.2580 29 1 2.2420 1.1215 10.1507 30 1 -0.3633 0.5030 0.8962 31 1 -0.3633 0.5245 -0.8836 32 1 -0.3633 -1.0276 -0.0124 33 1 4.8342 -3.4233 -2.0744 34 1 4.6316 -1.6312 -4.4915 35 1 6.0807 -2.1301 -3.5637 36 1 6.1543 -4.2917 -4.6313 37 1 5.6340 -3.2338 -5.9844 38 1 4.1205 -5.3720 -5.3469 39 1 3.3145 -3.8090 -5.6889 40 1 3.7651 -5.1935 -3.0476 41 1 2.4321 -4.1137 -3.5466 42 1 3.4250 -2.9772 0.3846 43 1 4.8403 -2.0400 -0.1596 44 1 3.9785 -0.0107 0.8417 45 1 3.8455 -1.2874 2.0733 46 1 0.6220 0.2695 2.4097 47 1 2.2702 0.9385 2.4750 48 1 1.3820 0.5149 4.9838 49 1 1.4557 -2.1299 5.9719 50 1 3.1039 -1.4607 6.0365 51 1 2.5086 -2.6892 9.4566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805792133.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:13 Heat of formation + Delta-G solvation = 40.308843 kcal Electronic energy + Delta-G solvation = -30820.954589 eV Core-core repulsion = 26756.148482 eV Total energy + Delta-G solvation = -4064.806106 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.44021 -39.61598 -38.38854 -37.70525 -35.11552 -34.29150 -32.47562 -32.33866 -31.24043 -29.50881 -29.02253 -27.93495 -27.76640 -26.31168 -23.62041 -23.41712 -22.43294 -22.17304 -20.96901 -19.93357 -19.71140 -19.61100 -17.69272 -17.17250 -16.60331 -16.37528 -15.94191 -15.73480 -15.47059 -15.31086 -14.85150 -14.80136 -14.55979 -14.31685 -14.01252 -13.75930 -13.59991 -13.06159 -12.86237 -12.71609 -12.31602 -12.16684 -12.02983 -11.97339 -11.87451 -11.77852 -11.58326 -11.42351 -11.40111 -11.36405 -11.18436 -11.10175 -11.04892 -10.89824 -10.87285 -10.38755 -10.37916 -10.16917 -9.49350 -9.27550 -9.09192 -8.80940 -8.56605 -7.98898 -6.23712 -4.31166 1.71283 2.32842 2.74401 3.15794 3.20137 3.21372 3.25922 3.27255 3.87330 4.01933 4.06292 4.21733 4.29540 4.30168 4.31411 4.67134 4.70553 4.78017 4.84528 4.90427 4.98016 5.10590 5.12414 5.17162 5.18362 5.18487 5.22533 5.35453 5.36670 5.42487 5.49919 5.52470 5.57975 5.60515 5.61071 5.69749 5.76163 5.85828 5.89599 6.00236 6.02375 6.07513 6.13420 6.50760 6.66395 6.79135 7.20747 7.31322 7.42089 7.57816 7.88877 8.50649 8.67015 8.68904 8.97192 9.35660 10.86271 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021851 B = 0.001994 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.071457 B =14038.994713 C =14893.592388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.170 3.830 3 H 0.072 0.928 4 C 0.183 3.817 5 N -0.286 5.286 6 N -0.296 5.296 7 C 0.187 3.813 8 C -0.005 4.005 9 C -0.113 4.113 10 C -0.123 4.123 11 C -0.121 4.121 12 C -0.112 4.112 13 N -0.463 5.463 14 C 0.112 3.888 15 C 0.037 3.963 16 N -0.519 5.519 17 C 0.034 3.966 18 C 0.500 3.500 19 O -0.541 6.541 20 N -0.711 5.711 21 C 0.252 3.748 22 C -0.546 4.546 23 H 0.063 0.937 24 C 0.064 3.936 25 N -0.885 5.885 26 Si 0.904 3.096 27 H -0.275 1.275 28 H -0.285 1.285 29 H -0.275 1.275 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.042 0.958 45 H 0.125 0.875 46 H 0.110 0.890 47 H 0.065 0.935 48 H 0.391 0.609 49 H 0.027 0.973 50 H 0.026 0.974 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.618 1.903 -22.936 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.090 0.910 4 C -0.085 4.085 5 N -0.126 5.126 6 N -0.137 5.137 7 C -0.080 4.080 8 C -0.026 4.026 9 C -0.151 4.151 10 C -0.160 4.160 11 C -0.159 4.159 12 C -0.151 4.151 13 N -0.152 5.152 14 C -0.011 4.011 15 C -0.091 4.091 16 N -0.244 5.244 17 C -0.097 4.097 18 C 0.283 3.717 19 O -0.419 6.419 20 N -0.360 5.360 21 C 0.132 3.868 22 C -0.584 4.584 23 H 0.081 0.919 24 C -0.140 4.140 25 N -0.522 5.522 26 Si 0.731 3.269 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.201 1.201 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.060 0.940 45 H 0.143 0.857 46 H 0.128 0.872 47 H 0.083 0.917 48 H 0.223 0.777 49 H 0.045 0.955 50 H 0.044 0.956 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.019 0.904 -24.048 24.399 hybrid contribution 0.712 1.197 2.279 2.671 sum 4.730 2.101 -21.770 22.376 Atomic orbital electron populations 1.21780 0.91137 1.03749 1.02756 1.20142 0.97153 0.93801 0.82958 0.91019 1.24438 0.91521 0.95784 0.96797 1.73936 1.21468 1.17951 0.99195 1.74477 1.05878 1.07912 1.25434 1.24476 1.01225 1.01240 0.81081 1.20255 0.92164 0.91370 0.98786 1.22449 0.98437 0.98809 0.95454 1.22498 0.97405 0.96902 0.99217 1.22338 0.96741 1.00507 0.96300 1.22159 1.00818 0.96174 0.95901 1.46067 1.28075 1.32159 1.08925 1.22177 0.96730 1.01295 0.80900 1.22608 0.88243 0.97003 1.01198 1.61696 1.13976 1.48159 1.00613 1.22086 1.03563 0.95294 0.88750 1.20173 0.79565 0.87606 0.84316 1.90632 1.45168 1.20257 1.85862 1.46464 1.63518 1.19673 1.06365 1.19098 0.96788 0.90475 0.80488 1.21180 1.44897 1.01753 0.90597 0.91920 1.24951 0.94716 0.94959 0.99351 1.69954 1.43272 1.13341 1.25643 0.86469 0.78988 0.79545 0.81879 1.20026 1.21045 1.20068 0.91239 0.90582 0.91274 0.89462 0.90229 0.91400 0.91357 0.91191 0.91502 0.91038 0.91136 0.90931 0.87881 0.88536 0.93992 0.85749 0.87221 0.91716 0.77675 0.95465 0.95576 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.12 37.16 0.34 -1.08 16 2 C 0.17 1.96 2.67 -68.56 -0.18 1.77 16 3 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 4 C 0.18 2.50 7.17 -155.28 -1.11 1.39 16 5 N -0.29 -4.43 12.15 32.76 0.40 -4.03 16 6 N -0.30 -4.45 12.03 32.66 0.39 -4.06 16 7 C 0.19 2.33 6.30 -155.63 -0.98 1.35 16 8 C 0.00 -0.04 3.35 -90.65 -0.30 -0.35 16 9 C -0.11 -0.90 6.36 -25.03 -0.16 -1.06 16 10 C -0.12 -0.80 6.91 -24.69 -0.17 -0.97 16 11 C -0.12 -0.88 6.83 -25.07 -0.17 -1.05 16 12 C -0.11 -0.96 6.45 -25.61 -0.17 -1.13 16 13 N -0.46 -5.79 3.12 -110.80 -0.35 -6.14 16 14 C 0.11 1.19 6.81 -3.90 -0.03 1.17 16 15 C 0.04 0.44 5.12 -3.55 -0.02 0.42 16 16 N -0.52 -6.57 4.15 -228.68 -0.95 -7.52 16 17 C 0.03 0.41 5.33 -4.97 -0.03 0.39 16 18 C 0.50 8.76 7.40 -10.98 -0.08 8.68 16 19 O -0.54 -11.48 14.43 5.56 0.08 -11.40 16 20 N -0.71 -13.56 5.55 -61.47 -0.34 -13.90 16 21 C 0.25 6.30 5.43 -5.19 -0.03 6.27 16 22 C -0.55 -14.18 9.28 -34.44 -0.32 -14.50 16 23 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 24 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 25 N -0.88 -25.29 13.29 55.43 0.74 -24.55 16 26 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 30 H 0.07 0.60 6.40 -51.93 -0.33 0.27 16 31 H 0.08 0.76 8.14 -51.94 -0.42 0.33 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.66 7.62 -51.93 -0.40 0.27 16 34 H 0.08 0.78 7.69 -51.93 -0.40 0.38 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.77 7.66 -51.93 -0.40 0.37 16 42 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.10 0.76 8.04 -51.93 -0.42 0.34 16 44 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 45 H 0.12 1.71 5.76 -51.93 -0.30 1.41 16 46 H 0.11 1.14 6.12 -51.93 -0.32 0.82 16 47 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 48 H 0.39 6.27 8.32 -40.82 -0.34 5.93 16 49 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 402.99 15.07 6.07 6.07 Total: -1.00 -33.10 402.99 -10.83 -43.93 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.35 Total: 3.47 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -3.51 Total: 2.93 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.11 Total: -60.20 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.10 -10.83 -43.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805792133.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.240 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds