Wall clock time and date at job start Wed Apr 1 2020 06:18:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09003 * 109.74613 * 2 1
4 4 C 1.50765 * 109.79386 * 239.28193 * 2 1 3
5 5 N 1.29634 * 129.27445 * 44.63864 * 4 2 1
6 6 N 1.28979 * 109.47874 * 180.16303 * 5 4 2
7 7 C 1.30920 * 109.75557 * 359.95013 * 6 5 4
8 8 C 1.50698 * 126.48555 * 179.97438 * 7 6 5
9 9 C 1.54266 * 110.03173 * 57.86986 * 8 7 6
10 10 C 1.54975 * 104.16002 * 217.13562 * 9 8 7
11 11 C 1.54893 * 102.77647 * 37.88690 * 10 9 8
12 12 C 1.53875 * 110.03633 * 300.65004 * 8 7 6
13 13 N 1.34419 * 107.03243 * 359.93528 * 7 6 5
14 14 C 1.46311 * 129.75853 * 180.28383 * 13 7 6
15 15 C 1.53462 * 108.17437 * 163.57107 * 14 13 7
16 16 N 1.46966 * 109.74133 * 49.60633 * 15 14 13
17 17 C 1.46901 * 111.00343 * 165.12683 * 16 15 14
18 18 C 1.50701 * 109.46921 * 294.27454 * 17 16 15
19 19 O 1.21280 * 119.99781 * 0.02562 * 18 17 16
20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16
21 21 C 1.46497 * 119.99566 * 180.02562 * 20 18 17
22 22 C 1.50703 * 109.46835 * 180.02562 * 21 20 18
23 23 H 1.07995 * 120.00280 * 0.02562 * 22 21 20
24 24 C 1.37880 * 119.99788 * 180.02562 * 22 21 20
25 25 N 1.31511 * 120.00327 * 0.02562 * 24 22 21
26 26 Si 1.86803 * 119.99743 * 179.97438 * 24 22 21
27 27 H 1.48506 * 109.47061 * 60.00295 * 26 24 22
28 28 H 1.48505 * 109.46988 * 179.97438 * 26 24 22
29 29 H 1.48494 * 109.47116 * 300.00069 * 26 24 22
30 30 H 1.09000 * 109.46996 * 299.30498 * 1 2 3
31 31 H 1.08989 * 109.47183 * 59.30873 * 1 2 3
32 32 H 1.09005 * 109.46987 * 179.31128 * 1 2 3
33 33 H 1.08999 * 110.01812 * 179.25933 * 8 7 6
34 34 H 1.08995 * 110.48695 * 335.78194 * 9 8 7
35 35 H 1.08995 * 110.48866 * 98.42757 * 9 8 7
36 36 H 1.09000 * 110.71792 * 279.57412 * 10 9 8
37 37 H 1.08997 * 110.76180 * 156.21671 * 10 9 8
38 38 H 1.08992 * 110.48790 * 203.40805 * 11 10 9
39 39 H 1.08997 * 110.48724 * 80.75684 * 11 10 9
40 40 H 1.08996 * 110.03570 * 238.57249 * 12 8 7
41 41 H 1.09003 * 110.02941 * 0.02562 * 12 8 7
42 42 H 1.08995 * 109.72405 * 283.24834 * 14 13 7
43 43 H 1.08997 * 109.72074 * 43.86679 * 14 13 7
44 44 H 1.08994 * 109.42917 * 289.52179 * 15 14 13
45 45 H 1.09003 * 109.42602 * 169.68385 * 15 14 13
46 46 H 1.09002 * 109.47401 * 174.27482 * 17 16 15
47 47 H 1.09001 * 109.46874 * 54.27494 * 17 16 15
48 48 H 0.96995 * 120.00011 * 0.02562 * 20 18 17
49 49 H 1.09001 * 109.47487 * 300.00114 * 21 20 18
50 50 H 1.09002 * 109.47182 * 60.00342 * 21 20 18
51 51 H 0.97000 * 120.00354 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8983 1.0259 0.0000
4 6 2.0406 -0.7246 -1.2195
5 7 1.6466 -0.6364 -2.4514
6 7 2.3477 -1.4323 -3.1852
7 6 3.2231 -2.0625 -2.4432
8 6 4.2307 -3.0792 -2.9144
9 6 5.1377 -2.4611 -3.9985
10 6 5.3776 -3.6207 -4.9982
11 6 4.0040 -4.3359 -5.0294
12 6 3.5105 -4.2709 -3.5692
13 7 3.0536 -1.6304 -1.1817
14 6 3.7693 -2.0026 0.0390
15 6 3.4768 -0.9409 1.1078
16 7 2.0282 -0.7081 1.1929
17 6 1.6834 0.0215 2.4204
18 6 1.9857 -0.8406 3.6189
19 8 2.4438 -1.9531 3.4655
20 7 1.7480 -0.3750 4.8612
21 6 2.0425 -1.2129 6.0262
22 6 1.6886 -0.4645 7.2855
23 1 1.2844 0.5351 7.2241
24 6 1.8810 -1.0559 8.5160
25 7 2.3737 -2.2730 8.5909
26 14 1.4430 -0.1280 10.0770
27 1 -0.0032 0.2093 10.0631
28 1 1.7414 -0.9774 11.2580
29 1 2.2420 1.1215 10.1507
30 1 -0.3633 0.5030 0.8962
31 1 -0.3633 0.5245 -0.8836
32 1 -0.3633 -1.0276 -0.0124
33 1 4.8342 -3.4233 -2.0744
34 1 4.6316 -1.6312 -4.4915
35 1 6.0807 -2.1301 -3.5637
36 1 6.1543 -4.2917 -4.6313
37 1 5.6340 -3.2338 -5.9844
38 1 4.1205 -5.3720 -5.3469
39 1 3.3145 -3.8090 -5.6889
40 1 3.7651 -5.1935 -3.0476
41 1 2.4321 -4.1137 -3.5466
42 1 3.4250 -2.9772 0.3846
43 1 4.8403 -2.0400 -0.1596
44 1 3.9785 -0.0107 0.8417
45 1 3.8455 -1.2874 2.0733
46 1 0.6220 0.2695 2.4097
47 1 2.2702 0.9385 2.4750
48 1 1.3820 0.5149 4.9838
49 1 1.4557 -2.1299 5.9719
50 1 3.1039 -1.4607 6.0365
51 1 2.5086 -2.6892 9.4566
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000805792133.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:18:13
Heat of formation + Delta-G solvation = 18.268952 kcal
Electronic energy + Delta-G solvation = -30821.910310 eV
Core-core repulsion = 26756.148482 eV
Total energy + Delta-G solvation = -4065.761828 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-44.42773 -40.88790 -39.18863 -38.78052 -36.12612 -36.02180 -34.32594 -33.36442
-32.08889 -30.62684 -29.65271 -29.30660 -28.72160 -27.62665 -24.96495 -24.48163
-23.65807 -23.26633 -21.55839 -21.35746 -20.67987 -20.46565 -19.08011 -18.26574
-17.78637 -17.55371 -17.11842 -16.92065 -16.59915 -16.27701 -16.18662 -15.96094
-15.69359 -15.42258 -15.24521 -14.58339 -14.38115 -14.27612 -14.20196 -13.94990
-13.79533 -13.53950 -13.08766 -12.94879 -12.83196 -12.80978 -12.65261 -12.61212
-12.54771 -12.29371 -12.22783 -12.09185 -12.02729 -11.95525 -11.83117 -11.49011
-11.46619 -11.33625 -11.12370 -10.77314 -10.69733 -10.13583 -9.78705 -9.50567
-8.27841 -6.43701 0.75494 1.40961 1.44492 1.47581 1.55643 1.71771
1.80102 2.09478 2.38997 2.82483 3.00721 3.07393 3.18850 3.37457
3.57636 3.66111 3.75788 3.90711 3.98340 4.04324 4.06533 4.09807
4.25512 4.29725 4.33681 4.45532 4.50562 4.54095 4.55551 4.61974
4.66905 4.78942 4.79739 4.84348 4.90355 4.97466 5.05232 5.05963
5.14181 5.23024 5.24295 5.27146 5.28296 5.33940 5.49091 5.50593
5.58263 5.72295 5.77128 5.86685 5.88391 6.67753 6.96278 7.25829
7.53869 7.64733 8.83681
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.021851 B = 0.001994 C = 0.001880
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1281.071457 B =14038.994713 C =14893.592388
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.175 3.825
3 H 0.095 0.905
4 C 0.176 3.824
5 N -0.316 5.316
6 N -0.331 5.331
7 C 0.194 3.806
8 C -0.008 4.008
9 C -0.110 4.110
10 C -0.116 4.116
11 C -0.120 4.120
12 C -0.111 4.111
13 N -0.466 5.466
14 C 0.113 3.887
15 C 0.040 3.960
16 N -0.539 5.539
17 C 0.049 3.951
18 C 0.498 3.502
19 O -0.582 6.582
20 N -0.708 5.708
21 C 0.270 3.730
22 C -0.556 4.556
23 H 0.084 0.916
24 C 0.004 3.996
25 N -0.930 5.930
26 Si 0.981 3.019
27 H -0.263 1.263
28 H -0.288 1.288
29 H -0.262 1.262
30 H 0.092 0.908
31 H 0.078 0.922
32 H 0.046 0.954
33 H 0.107 0.893
34 H 0.056 0.944
35 H 0.083 0.917
36 H 0.085 0.915
37 H 0.076 0.924
38 H 0.082 0.918
39 H 0.056 0.944
40 H 0.085 0.915
41 H 0.044 0.956
42 H 0.091 0.909
43 H 0.128 0.872
44 H 0.061 0.939
45 H 0.103 0.897
46 H 0.136 0.864
47 H 0.100 0.900
48 H 0.409 0.591
49 H -0.015 1.015
50 H -0.010 1.010
51 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.117 3.802 -22.979 23.847
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.065 3.935
3 H 0.112 0.888
4 C -0.094 4.094
5 N -0.155 5.155
6 N -0.171 5.171
7 C -0.074 4.074
8 C -0.028 4.028
9 C -0.149 4.149
10 C -0.153 4.153
11 C -0.158 4.158
12 C -0.150 4.150
13 N -0.156 5.156
14 C -0.009 4.009
15 C -0.088 4.088
16 N -0.265 5.265
17 C -0.081 4.081
18 C 0.285 3.715
19 O -0.462 6.462
20 N -0.359 5.359
21 C 0.147 3.853
22 C -0.593 4.593
23 H 0.102 0.898
24 C -0.196 4.196
25 N -0.569 5.569
26 Si 0.804 3.196
27 H -0.188 1.188
28 H -0.214 1.214
29 H -0.186 1.186
30 H 0.111 0.889
31 H 0.097 0.903
32 H 0.065 0.935
33 H 0.125 0.875
34 H 0.075 0.925
35 H 0.101 0.899
36 H 0.104 0.896
37 H 0.095 0.905
38 H 0.100 0.900
39 H 0.075 0.925
40 H 0.103 0.897
41 H 0.063 0.937
42 H 0.109 0.891
43 H 0.145 0.855
44 H 0.079 0.921
45 H 0.121 0.879
46 H 0.154 0.846
47 H 0.118 0.882
48 H 0.244 0.756
49 H 0.003 0.997
50 H 0.008 0.992
51 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 4.499 2.850 -24.135 24.716
hybrid contribution 0.565 0.530 2.218 2.350
sum 5.064 3.381 -21.917 22.747
Atomic orbital electron populations
1.21765 0.90486 1.02665 1.04069 1.20241 0.97550 0.94300 0.81421
0.88752 1.24864 0.91556 0.95988 0.96976 1.73847 1.22472 1.19020
1.00179 1.74401 1.07145 1.09066 1.26453 1.25064 1.00777 1.00740
0.80858 1.20514 0.91789 0.90709 0.99826 1.22425 0.98458 0.98621
0.95353 1.22494 0.97169 0.96386 0.99258 1.22334 0.96979 1.01421
0.95049 1.22160 0.99095 0.96635 0.97106 1.46220 1.28013 1.31998
1.09329 1.22280 0.98267 1.00336 0.80066 1.22534 0.88013 0.97977
1.00305 1.61614 1.14655 1.49163 1.01086 1.22005 1.05686 0.94692
0.85740 1.21129 0.77803 0.87578 0.85040 1.90622 1.46605 1.22514
1.86490 1.46161 1.64210 1.19912 1.05575 1.18477 0.93730 0.90026
0.83047 1.21615 1.44310 1.02580 0.90843 0.89766 1.26023 0.94434
0.95753 1.03361 1.70118 1.44825 1.15398 1.26531 0.85263 0.79243
0.78215 0.76842 1.18805 1.21361 1.18639 0.88912 0.90270 0.93493
0.87517 0.92477 0.89874 0.89626 0.90487 0.89957 0.92487 0.89653
0.93679 0.89099 0.85457 0.92120 0.87935 0.84650 0.88229 0.75552
0.99674 0.99246 0.92349
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.52 9.12 71.98 0.66 -1.87 16
2 C 0.17 3.68 2.67 44.09 0.12 3.79 16
3 H 0.10 1.59 8.13 -2.39 -0.02 1.57 16
4 C 0.18 4.68 7.17 138.11 0.99 5.67 16
5 N -0.32 -9.89 12.15 -50.27 -0.61 -10.50 16
6 N -0.33 -10.15 12.03 -50.58 -0.61 -10.76 16
7 C 0.19 4.79 6.30 138.20 0.87 5.66 16
8 C -0.01 -0.13 3.35 -10.82 -0.04 -0.16 16
9 C -0.11 -1.61 6.36 31.70 0.20 -1.41 16
10 C -0.12 -1.29 6.91 31.92 0.22 -1.07 16
11 C -0.12 -1.64 6.83 31.67 0.22 -1.42 16
12 C -0.11 -1.86 6.45 31.32 0.20 -1.66 16
13 N -0.47 -11.35 3.12 -504.45 -1.57 -12.92 16
14 C 0.11 2.29 6.81 86.57 0.59 2.88 16
15 C 0.04 0.88 5.12 86.45 0.44 1.32 16
16 N -0.54 -12.71 4.15 -877.40 -3.64 -16.36 16
17 C 0.05 1.06 5.33 85.56 0.46 1.51 16
18 C 0.50 17.17 7.40 87.66 0.65 17.82 16
19 O -0.58 -25.32 14.43 -3.03 -0.04 -25.36 16
20 N -0.71 -26.65 5.55 -466.78 -2.59 -29.24 16
21 C 0.27 13.92 5.43 85.63 0.46 14.39 16
22 C -0.56 -28.78 9.28 25.60 0.24 -28.54 16
23 H 0.08 3.90 7.60 -2.91 -0.02 3.88 16
24 C 0.00 0.21 5.46 84.66 0.46 0.68 16
25 N -0.93 -54.52 13.29 21.45 0.28 -54.23 16
26 Si 0.98 40.93 29.54 68.60 2.03 42.96 16
27 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16
28 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16
29 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16
30 H 0.09 1.31 6.40 -2.39 -0.02 1.29 16
31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16
32 H 0.05 1.10 8.14 -2.38 -0.02 1.09 16
33 H 0.11 1.40 7.62 -2.39 -0.02 1.38 16
34 H 0.06 1.11 7.69 -2.39 -0.02 1.09 16
35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16
36 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16
37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16
38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16
39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16
41 H 0.04 1.00 7.66 -2.39 -0.02 0.98 16
42 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16
43 H 0.13 1.74 8.04 -2.39 -0.02 1.73 16
44 H 0.06 1.11 8.08 -2.39 -0.02 1.09 16
45 H 0.10 2.79 5.76 -2.39 -0.01 2.78 16
46 H 0.14 2.29 6.12 -2.39 -0.01 2.28 16
47 H 0.10 1.57 8.12 -2.39 -0.02 1.55 16
48 H 0.41 12.30 8.32 -92.71 -0.77 11.53 16
49 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16
50 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16
51 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16
Total: -1.00 -76.18 402.99 0.15 -76.03
By element:
Atomic # 1 Polarization: 22.62 SS G_CDS: 0.17 Total: 22.79 kcal
Atomic # 6 Polarization: 10.85 SS G_CDS: 6.74 Total: 17.59 kcal
Atomic # 7 Polarization: -125.27 SS G_CDS: -8.74 Total: -134.01 kcal
Atomic # 8 Polarization: -25.32 SS G_CDS: -0.04 Total: -25.36 kcal
Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal
Total: -76.18 0.15 -76.03 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000805792133.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.302 kcal
(2) G-P(sol) polarization free energy of solvation -76.183 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.119 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.034 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.269 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds