Wall clock time and date at job start Wed Apr 1 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.74613 * 2 1 4 4 C 1.50765 * 109.79386 * 239.28193 * 2 1 3 5 5 N 1.29634 * 129.27445 * 44.63864 * 4 2 1 6 6 N 1.28979 * 109.47874 * 180.16303 * 5 4 2 7 7 C 1.30920 * 109.75557 * 359.95013 * 6 5 4 8 8 C 1.50698 * 126.48555 * 179.97438 * 7 6 5 9 9 C 1.54266 * 110.03173 * 57.86986 * 8 7 6 10 10 C 1.54975 * 104.16002 * 217.13562 * 9 8 7 11 11 C 1.54893 * 102.77647 * 37.88690 * 10 9 8 12 12 C 1.53875 * 110.03633 * 300.65004 * 8 7 6 13 13 N 1.34419 * 107.03243 * 359.93528 * 7 6 5 14 14 C 1.46311 * 129.75853 * 180.28383 * 13 7 6 15 15 C 1.53462 * 108.17437 * 163.57107 * 14 13 7 16 16 N 1.46966 * 109.74133 * 49.60633 * 15 14 13 17 17 C 1.46901 * 111.00343 * 165.12683 * 16 15 14 18 18 C 1.50701 * 109.46921 * 294.27454 * 17 16 15 19 19 O 1.21280 * 119.99781 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.46497 * 119.99566 * 180.02562 * 20 18 17 22 22 C 1.50703 * 109.46835 * 180.02562 * 21 20 18 23 23 H 1.07995 * 120.00280 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99788 * 180.02562 * 22 21 20 25 25 N 1.31511 * 120.00327 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99743 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47061 * 60.00295 * 26 24 22 28 28 H 1.48505 * 109.46988 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47116 * 300.00069 * 26 24 22 30 30 H 1.09000 * 109.46996 * 299.30498 * 1 2 3 31 31 H 1.08989 * 109.47183 * 59.30873 * 1 2 3 32 32 H 1.09005 * 109.46987 * 179.31128 * 1 2 3 33 33 H 1.08999 * 110.01812 * 179.25933 * 8 7 6 34 34 H 1.08995 * 110.48695 * 335.78194 * 9 8 7 35 35 H 1.08995 * 110.48866 * 98.42757 * 9 8 7 36 36 H 1.09000 * 110.71792 * 279.57412 * 10 9 8 37 37 H 1.08997 * 110.76180 * 156.21671 * 10 9 8 38 38 H 1.08992 * 110.48790 * 203.40805 * 11 10 9 39 39 H 1.08997 * 110.48724 * 80.75684 * 11 10 9 40 40 H 1.08996 * 110.03570 * 238.57249 * 12 8 7 41 41 H 1.09003 * 110.02941 * 0.02562 * 12 8 7 42 42 H 1.08995 * 109.72405 * 283.24834 * 14 13 7 43 43 H 1.08997 * 109.72074 * 43.86679 * 14 13 7 44 44 H 1.08994 * 109.42917 * 289.52179 * 15 14 13 45 45 H 1.09003 * 109.42602 * 169.68385 * 15 14 13 46 46 H 1.09002 * 109.47401 * 174.27482 * 17 16 15 47 47 H 1.09001 * 109.46874 * 54.27494 * 17 16 15 48 48 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 49 49 H 1.09001 * 109.47487 * 300.00114 * 21 20 18 50 50 H 1.09002 * 109.47182 * 60.00342 * 21 20 18 51 51 H 0.97000 * 120.00354 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0406 -0.7246 -1.2195 5 7 1.6466 -0.6364 -2.4514 6 7 2.3477 -1.4323 -3.1852 7 6 3.2231 -2.0625 -2.4432 8 6 4.2307 -3.0792 -2.9144 9 6 5.1377 -2.4611 -3.9985 10 6 5.3776 -3.6207 -4.9982 11 6 4.0040 -4.3359 -5.0294 12 6 3.5105 -4.2709 -3.5692 13 7 3.0536 -1.6304 -1.1817 14 6 3.7693 -2.0026 0.0390 15 6 3.4768 -0.9409 1.1078 16 7 2.0282 -0.7081 1.1929 17 6 1.6834 0.0215 2.4204 18 6 1.9857 -0.8406 3.6189 19 8 2.4438 -1.9531 3.4655 20 7 1.7480 -0.3750 4.8612 21 6 2.0425 -1.2129 6.0262 22 6 1.6886 -0.4645 7.2855 23 1 1.2844 0.5351 7.2241 24 6 1.8810 -1.0559 8.5160 25 7 2.3737 -2.2730 8.5909 26 14 1.4430 -0.1280 10.0770 27 1 -0.0032 0.2093 10.0631 28 1 1.7414 -0.9774 11.2580 29 1 2.2420 1.1215 10.1507 30 1 -0.3633 0.5030 0.8962 31 1 -0.3633 0.5245 -0.8836 32 1 -0.3633 -1.0276 -0.0124 33 1 4.8342 -3.4233 -2.0744 34 1 4.6316 -1.6312 -4.4915 35 1 6.0807 -2.1301 -3.5637 36 1 6.1543 -4.2917 -4.6313 37 1 5.6340 -3.2338 -5.9844 38 1 4.1205 -5.3720 -5.3469 39 1 3.3145 -3.8090 -5.6889 40 1 3.7651 -5.1935 -3.0476 41 1 2.4321 -4.1137 -3.5466 42 1 3.4250 -2.9772 0.3846 43 1 4.8403 -2.0400 -0.1596 44 1 3.9785 -0.0107 0.8417 45 1 3.8455 -1.2874 2.0733 46 1 0.6220 0.2695 2.4097 47 1 2.2702 0.9385 2.4750 48 1 1.3820 0.5149 4.9838 49 1 1.4557 -2.1299 5.9719 50 1 3.1039 -1.4607 6.0365 51 1 2.5086 -2.6892 9.4566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805792133.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:13 Heat of formation + Delta-G solvation = 18.268952 kcal Electronic energy + Delta-G solvation = -30821.910310 eV Core-core repulsion = 26756.148482 eV Total energy + Delta-G solvation = -4065.761828 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.42773 -40.88790 -39.18863 -38.78052 -36.12612 -36.02180 -34.32594 -33.36442 -32.08889 -30.62684 -29.65271 -29.30660 -28.72160 -27.62665 -24.96495 -24.48163 -23.65807 -23.26633 -21.55839 -21.35746 -20.67987 -20.46565 -19.08011 -18.26574 -17.78637 -17.55371 -17.11842 -16.92065 -16.59915 -16.27701 -16.18662 -15.96094 -15.69359 -15.42258 -15.24521 -14.58339 -14.38115 -14.27612 -14.20196 -13.94990 -13.79533 -13.53950 -13.08766 -12.94879 -12.83196 -12.80978 -12.65261 -12.61212 -12.54771 -12.29371 -12.22783 -12.09185 -12.02729 -11.95525 -11.83117 -11.49011 -11.46619 -11.33625 -11.12370 -10.77314 -10.69733 -10.13583 -9.78705 -9.50567 -8.27841 -6.43701 0.75494 1.40961 1.44492 1.47581 1.55643 1.71771 1.80102 2.09478 2.38997 2.82483 3.00721 3.07393 3.18850 3.37457 3.57636 3.66111 3.75788 3.90711 3.98340 4.04324 4.06533 4.09807 4.25512 4.29725 4.33681 4.45532 4.50562 4.54095 4.55551 4.61974 4.66905 4.78942 4.79739 4.84348 4.90355 4.97466 5.05232 5.05963 5.14181 5.23024 5.24295 5.27146 5.28296 5.33940 5.49091 5.50593 5.58263 5.72295 5.77128 5.86685 5.88391 6.67753 6.96278 7.25829 7.53869 7.64733 8.83681 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021851 B = 0.001994 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.071457 B =14038.994713 C =14893.592388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.175 3.825 3 H 0.095 0.905 4 C 0.176 3.824 5 N -0.316 5.316 6 N -0.331 5.331 7 C 0.194 3.806 8 C -0.008 4.008 9 C -0.110 4.110 10 C -0.116 4.116 11 C -0.120 4.120 12 C -0.111 4.111 13 N -0.466 5.466 14 C 0.113 3.887 15 C 0.040 3.960 16 N -0.539 5.539 17 C 0.049 3.951 18 C 0.498 3.502 19 O -0.582 6.582 20 N -0.708 5.708 21 C 0.270 3.730 22 C -0.556 4.556 23 H 0.084 0.916 24 C 0.004 3.996 25 N -0.930 5.930 26 Si 0.981 3.019 27 H -0.263 1.263 28 H -0.288 1.288 29 H -0.262 1.262 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.091 0.909 43 H 0.128 0.872 44 H 0.061 0.939 45 H 0.103 0.897 46 H 0.136 0.864 47 H 0.100 0.900 48 H 0.409 0.591 49 H -0.015 1.015 50 H -0.010 1.010 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.117 3.802 -22.979 23.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.065 3.935 3 H 0.112 0.888 4 C -0.094 4.094 5 N -0.155 5.155 6 N -0.171 5.171 7 C -0.074 4.074 8 C -0.028 4.028 9 C -0.149 4.149 10 C -0.153 4.153 11 C -0.158 4.158 12 C -0.150 4.150 13 N -0.156 5.156 14 C -0.009 4.009 15 C -0.088 4.088 16 N -0.265 5.265 17 C -0.081 4.081 18 C 0.285 3.715 19 O -0.462 6.462 20 N -0.359 5.359 21 C 0.147 3.853 22 C -0.593 4.593 23 H 0.102 0.898 24 C -0.196 4.196 25 N -0.569 5.569 26 Si 0.804 3.196 27 H -0.188 1.188 28 H -0.214 1.214 29 H -0.186 1.186 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.145 0.855 44 H 0.079 0.921 45 H 0.121 0.879 46 H 0.154 0.846 47 H 0.118 0.882 48 H 0.244 0.756 49 H 0.003 0.997 50 H 0.008 0.992 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.499 2.850 -24.135 24.716 hybrid contribution 0.565 0.530 2.218 2.350 sum 5.064 3.381 -21.917 22.747 Atomic orbital electron populations 1.21765 0.90486 1.02665 1.04069 1.20241 0.97550 0.94300 0.81421 0.88752 1.24864 0.91556 0.95988 0.96976 1.73847 1.22472 1.19020 1.00179 1.74401 1.07145 1.09066 1.26453 1.25064 1.00777 1.00740 0.80858 1.20514 0.91789 0.90709 0.99826 1.22425 0.98458 0.98621 0.95353 1.22494 0.97169 0.96386 0.99258 1.22334 0.96979 1.01421 0.95049 1.22160 0.99095 0.96635 0.97106 1.46220 1.28013 1.31998 1.09329 1.22280 0.98267 1.00336 0.80066 1.22534 0.88013 0.97977 1.00305 1.61614 1.14655 1.49163 1.01086 1.22005 1.05686 0.94692 0.85740 1.21129 0.77803 0.87578 0.85040 1.90622 1.46605 1.22514 1.86490 1.46161 1.64210 1.19912 1.05575 1.18477 0.93730 0.90026 0.83047 1.21615 1.44310 1.02580 0.90843 0.89766 1.26023 0.94434 0.95753 1.03361 1.70118 1.44825 1.15398 1.26531 0.85263 0.79243 0.78215 0.76842 1.18805 1.21361 1.18639 0.88912 0.90270 0.93493 0.87517 0.92477 0.89874 0.89626 0.90487 0.89957 0.92487 0.89653 0.93679 0.89099 0.85457 0.92120 0.87935 0.84650 0.88229 0.75552 0.99674 0.99246 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.12 71.98 0.66 -1.87 16 2 C 0.17 3.68 2.67 44.09 0.12 3.79 16 3 H 0.10 1.59 8.13 -2.39 -0.02 1.57 16 4 C 0.18 4.68 7.17 138.11 0.99 5.67 16 5 N -0.32 -9.89 12.15 -50.27 -0.61 -10.50 16 6 N -0.33 -10.15 12.03 -50.58 -0.61 -10.76 16 7 C 0.19 4.79 6.30 138.20 0.87 5.66 16 8 C -0.01 -0.13 3.35 -10.82 -0.04 -0.16 16 9 C -0.11 -1.61 6.36 31.70 0.20 -1.41 16 10 C -0.12 -1.29 6.91 31.92 0.22 -1.07 16 11 C -0.12 -1.64 6.83 31.67 0.22 -1.42 16 12 C -0.11 -1.86 6.45 31.32 0.20 -1.66 16 13 N -0.47 -11.35 3.12 -504.45 -1.57 -12.92 16 14 C 0.11 2.29 6.81 86.57 0.59 2.88 16 15 C 0.04 0.88 5.12 86.45 0.44 1.32 16 16 N -0.54 -12.71 4.15 -877.40 -3.64 -16.36 16 17 C 0.05 1.06 5.33 85.56 0.46 1.51 16 18 C 0.50 17.17 7.40 87.66 0.65 17.82 16 19 O -0.58 -25.32 14.43 -3.03 -0.04 -25.36 16 20 N -0.71 -26.65 5.55 -466.78 -2.59 -29.24 16 21 C 0.27 13.92 5.43 85.63 0.46 14.39 16 22 C -0.56 -28.78 9.28 25.60 0.24 -28.54 16 23 H 0.08 3.90 7.60 -2.91 -0.02 3.88 16 24 C 0.00 0.21 5.46 84.66 0.46 0.68 16 25 N -0.93 -54.52 13.29 21.45 0.28 -54.23 16 26 Si 0.98 40.93 29.54 68.60 2.03 42.96 16 27 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 28 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 29 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 30 H 0.09 1.31 6.40 -2.39 -0.02 1.29 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.10 8.14 -2.38 -0.02 1.09 16 33 H 0.11 1.40 7.62 -2.39 -0.02 1.38 16 34 H 0.06 1.11 7.69 -2.39 -0.02 1.09 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.04 1.00 7.66 -2.39 -0.02 0.98 16 42 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16 43 H 0.13 1.74 8.04 -2.39 -0.02 1.73 16 44 H 0.06 1.11 8.08 -2.39 -0.02 1.09 16 45 H 0.10 2.79 5.76 -2.39 -0.01 2.78 16 46 H 0.14 2.29 6.12 -2.39 -0.01 2.28 16 47 H 0.10 1.57 8.12 -2.39 -0.02 1.55 16 48 H 0.41 12.30 8.32 -92.71 -0.77 11.53 16 49 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 50 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 51 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -76.18 402.99 0.15 -76.03 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.17 Total: 22.79 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 6.74 Total: 17.59 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -8.74 Total: -134.01 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.04 Total: -25.36 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -76.18 0.15 -76.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805792133.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.302 kcal (2) G-P(sol) polarization free energy of solvation -76.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds