Wall clock time and date at job start Wed Apr 1 2020 06:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.58889 * 2 1 4 4 C 1.53188 * 109.70472 * 239.64109 * 2 1 3 5 5 C 1.53043 * 109.31467 * 294.77984 * 4 2 1 6 6 H 1.08998 * 109.45899 * 58.64237 * 5 4 2 7 7 N 1.46504 * 109.45992 * 178.61356 * 5 4 2 8 8 C 1.34780 * 119.99658 * 205.00128 * 7 5 4 9 9 O 1.21280 * 120.00427 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99770 * 179.97438 * 8 7 5 11 11 C 1.50697 * 109.47087 * 179.97438 * 10 8 7 12 12 N 1.30834 * 125.96057 * 90.03033 * 11 10 8 13 13 C 1.33240 * 109.82857 * 179.97438 * 12 11 10 14 14 C 1.50702 * 125.52320 * 179.97438 * 13 12 11 15 15 C 1.52999 * 117.49725 * 188.74918 * 14 13 12 16 16 C 1.53000 * 117.49788 * 120.09082 * 14 13 12 17 17 N 1.30708 * 108.94958 * 359.97438 * 13 12 11 18 18 N 1.34424 * 125.96209 * 269.71861 * 11 10 8 19 19 C 1.46497 * 126.82657 * 359.97438 * 18 11 10 20 20 C 1.53033 * 109.53857 * 298.63644 * 5 4 2 21 21 C 1.52760 * 109.38562 * 61.23545 * 20 5 4 22 22 N 1.46915 * 109.00966 * 305.59342 * 21 20 5 23 23 C 1.36945 * 120.63065 * 233.58343 * 22 21 20 24 24 H 1.07996 * 120.00223 * 151.62647 * 23 22 21 25 25 C 1.38812 * 119.99791 * 331.62845 * 23 22 21 26 26 N 1.31621 * 119.99722 * 343.22075 * 25 23 22 27 27 Si 1.86797 * 120.00136 * 163.22109 * 25 23 22 28 28 H 1.48497 * 109.47343 * 89.99726 * 27 25 23 29 29 H 1.48499 * 109.47138 * 210.00291 * 27 25 23 30 30 H 1.48506 * 109.47011 * 329.99973 * 27 25 23 31 31 H 1.08991 * 109.47412 * 299.72237 * 1 2 3 32 32 H 1.09004 * 109.47115 * 59.72047 * 1 2 3 33 33 H 1.09001 * 109.47524 * 179.71216 * 1 2 3 34 34 H 1.09006 * 109.50014 * 54.73231 * 4 2 1 35 35 H 1.09001 * 109.50186 * 174.79676 * 4 2 1 36 36 H 0.96997 * 119.99883 * 24.99878 * 7 5 4 37 37 H 1.08999 * 109.47095 * 300.00141 * 10 8 7 38 38 H 1.09008 * 109.46947 * 60.00126 * 10 8 7 39 39 H 1.09006 * 115.55287 * 334.41344 * 14 13 12 40 40 H 1.09008 * 117.50016 * 359.97438 * 15 14 13 41 41 H 1.09003 * 117.50468 * 145.02101 * 15 14 13 42 42 H 1.09006 * 117.49727 * 214.97597 * 16 14 13 43 43 H 1.09000 * 117.49920 * 359.96868 * 16 14 13 44 44 H 1.09004 * 109.46592 * 89.99942 * 19 18 11 45 45 H 1.08995 * 109.47826 * 209.99760 * 19 18 11 46 46 H 1.08996 * 109.46877 * 330.00701 * 19 18 11 47 47 H 1.09002 * 109.50193 * 181.31451 * 20 5 4 48 48 H 1.09006 * 109.49898 * 301.41116 * 20 5 4 49 49 H 1.09001 * 109.50960 * 185.70236 * 21 20 5 50 50 H 1.09001 * 109.42767 * 65.42922 * 21 20 5 51 51 H 0.97006 * 119.99968 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 1.6473 -2.2044 -1.1690 6 1 0.5625 -2.2840 -1.0992 7 7 2.1111 -2.8977 -2.3734 8 6 1.4864 -4.0174 -2.7891 9 8 0.5402 -4.4507 -2.1663 10 6 1.9631 -4.7302 -4.0283 11 6 1.1027 -5.9430 -4.2724 12 7 0.0070 -5.9766 -4.9867 13 6 -0.4939 -7.2113 -4.9883 14 6 -1.7490 -7.6461 -5.7002 15 6 -2.2702 -9.0561 -5.4153 16 6 -1.6160 -8.7392 -6.7624 17 7 0.2799 -7.9841 -4.2725 18 7 1.3301 -7.1805 -3.7992 19 6 2.4502 -7.6062 -2.9564 20 6 2.2856 -2.8449 0.0656 21 6 1.7767 -2.1410 1.3223 22 7 2.0224 -0.6981 1.1954 23 6 2.7026 -0.0178 2.1700 24 1 3.2720 0.8640 1.9159 25 6 2.6603 -0.4616 3.4845 26 7 1.7299 -1.3126 3.8621 27 14 3.9237 0.1488 4.7176 28 1 3.4171 1.3786 5.3779 29 1 4.1632 -0.9000 5.7413 30 1 5.1955 0.4529 4.0138 31 1 -0.3634 0.5095 0.8924 32 1 -0.3633 0.5182 -0.8875 33 1 -0.3634 -1.0276 -0.0052 34 1 1.6107 -0.2792 -2.1366 35 1 3.1325 -0.6473 -1.2894 36 1 2.8676 -2.5509 -2.8717 37 1 1.8947 -4.0576 -4.8833 38 1 2.9990 -5.0414 -3.8927 39 1 -2.4865 -6.8625 -5.8739 40 1 -1.7050 -9.6694 -4.7134 41 1 -3.3505 -9.2003 -5.4021 42 1 -2.2663 -8.6749 -7.6349 43 1 -0.6206 -9.1434 -6.9468 44 1 2.1792 -7.4912 -1.9068 45 1 2.6810 -8.6519 -3.1595 46 1 3.3236 -6.9921 -3.1754 47 1 2.0199 -3.9012 0.1060 48 1 3.3695 -2.7438 0.0087 49 1 2.3049 -2.5264 2.1945 50 1 0.7073 -2.3214 1.4310 51 1 1.7000 -1.6225 4.7809 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948061208.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:25 Heat of formation + Delta-G solvation = 97.190884 kcal Electronic energy + Delta-G solvation = -30836.958100 eV Core-core repulsion = 26774.618584 eV Total energy + Delta-G solvation = -4062.339516 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.32250 -39.81587 -37.85737 -37.39754 -34.55594 -34.06482 -32.91445 -32.45206 -30.90735 -29.84409 -28.76417 -27.46878 -26.82774 -24.34874 -23.92633 -22.66861 -22.37561 -21.89507 -20.96680 -20.27774 -19.93168 -18.46218 -17.41592 -17.21578 -16.73798 -16.09827 -15.87732 -15.54384 -15.23128 -14.95370 -14.68500 -14.08449 -13.95835 -13.77206 -13.70832 -13.57792 -13.41209 -13.08007 -12.87797 -12.53661 -12.38250 -12.32575 -12.18234 -11.89387 -11.71680 -11.43223 -11.11769 -11.10159 -10.96587 -10.81805 -10.77215 -10.63110 -10.38587 -10.23311 -10.12738 -10.07227 -9.92893 -9.75240 -9.72629 -9.42692 -9.27367 -8.78973 -8.44211 -6.70455 -5.80739 -3.23689 1.40020 2.10583 2.57663 2.62049 3.25547 3.35465 3.42641 3.44048 3.62110 3.75360 4.15387 4.25812 4.46377 4.58378 4.61335 4.71077 4.74376 4.88189 4.92609 5.05154 5.18531 5.25556 5.35437 5.36254 5.36945 5.38492 5.55203 5.56188 5.75647 5.83469 5.89973 5.99120 6.03340 6.16531 6.23727 6.27277 6.30726 6.38465 6.42547 6.55510 6.60112 6.63093 6.74852 6.83878 6.92994 7.14470 7.35106 7.57356 7.67085 7.77714 8.00477 8.26448 8.43476 9.19130 9.82553 10.39323 11.27628 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020154 B = 0.002122 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.999812 B =13191.670761 C =13504.870326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.066 0.934 4 C -0.132 4.132 5 C 0.150 3.850 6 H 0.086 0.914 7 N -0.721 5.721 8 C 0.515 3.485 9 O -0.526 6.526 10 C -0.068 4.068 11 C 0.304 3.696 12 N -0.527 5.527 13 C 0.255 3.745 14 C -0.069 4.069 15 C -0.161 4.161 16 C -0.160 4.160 17 N -0.315 5.315 18 N -0.371 5.371 19 C 0.094 3.906 20 C -0.146 4.146 21 C 0.174 3.826 22 N -0.584 5.584 23 C -0.253 4.253 24 H 0.065 0.935 25 C 0.003 3.997 26 N -0.900 5.900 27 Si 0.901 3.099 28 H -0.287 1.287 29 H -0.290 1.290 30 H -0.280 1.280 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.396 0.604 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.131 0.869 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.050 0.950 48 H 0.055 0.945 49 H 0.088 0.912 50 H 0.020 0.980 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 -11.232 -20.582 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.061 3.939 3 H 0.084 0.916 4 C -0.172 4.172 5 C 0.047 3.953 6 H 0.104 0.896 7 N -0.372 5.372 8 C 0.298 3.702 9 O -0.401 6.401 10 C -0.110 4.110 11 C 0.027 3.973 12 N -0.254 5.254 13 C -0.027 4.027 14 C -0.090 4.090 15 C -0.199 4.199 16 C -0.198 4.198 17 N -0.144 5.144 18 N -0.161 5.161 19 C -0.048 4.048 20 C -0.186 4.186 21 C 0.047 3.953 22 N -0.306 5.306 23 C -0.383 4.383 24 H 0.083 0.917 25 C -0.196 4.196 26 N -0.544 5.544 27 Si 0.731 3.269 28 H -0.214 1.214 29 H -0.216 1.216 30 H -0.205 1.205 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.230 0.770 37 H 0.148 0.852 38 H 0.133 0.867 39 H 0.149 0.851 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.106 0.894 50 H 0.039 0.961 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.482 -12.124 -19.900 23.307 hybrid contribution 1.257 0.566 0.732 1.561 sum 1.739 -11.558 -19.168 22.450 Atomic orbital electron populations 1.22303 0.98661 1.01117 1.00130 1.20443 0.91807 0.95141 0.86468 0.91606 1.22299 1.01172 0.94030 0.99694 1.21136 0.99901 0.91356 0.82906 0.89623 1.46265 1.34722 1.26725 1.29438 1.20010 0.83511 0.81459 0.85243 1.90791 1.27334 1.65343 1.56676 1.20223 0.98252 0.92531 1.00026 1.23261 0.93767 0.87396 0.92867 1.70205 1.09194 1.21840 1.24209 1.23014 0.96347 0.87347 0.95964 1.20046 0.93268 0.93459 1.02237 1.23046 1.01137 0.96404 0.99278 1.23032 1.02805 1.00975 0.93014 1.77912 0.99771 1.18014 1.18693 1.50050 1.20335 1.06761 1.38980 1.21984 0.85451 1.02778 0.94570 1.22490 1.00136 0.99049 0.96916 1.20637 0.97804 0.82980 0.93838 1.44139 1.64008 1.03263 1.19196 1.19137 1.22046 1.10448 0.86633 0.91696 1.25067 0.97706 0.99938 0.96854 1.70037 1.31900 1.35562 1.16879 0.86327 0.81515 0.77942 0.81140 1.21415 1.21623 1.20523 0.92584 0.94451 0.93251 0.92476 0.91817 0.77034 0.85161 0.86742 0.85145 0.87865 0.87846 0.87804 0.88663 0.89728 0.88862 0.89101 0.93096 0.92659 0.89364 0.96146 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 9.04 37.16 0.34 -2.76 16 2 C 0.17 3.33 3.28 -67.60 -0.22 3.11 16 3 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 4 C -0.13 -2.07 5.03 -26.61 -0.13 -2.21 16 5 C 0.15 2.45 2.21 -67.89 -0.15 2.30 16 6 H 0.09 1.64 5.94 -51.93 -0.31 1.33 16 7 N -0.72 -8.90 5.08 -53.77 -0.27 -9.18 16 8 C 0.51 6.96 7.79 -10.98 -0.09 6.87 16 9 O -0.53 -9.90 15.70 5.56 0.09 -9.81 16 10 C -0.07 -0.64 6.03 -29.04 -0.18 -0.81 16 11 C 0.30 4.02 6.48 -155.70 -1.01 3.01 16 12 N -0.53 -8.03 11.19 -8.16 -0.09 -8.12 16 13 C 0.25 3.66 7.68 -156.86 -1.21 2.45 16 14 C -0.07 -0.76 6.33 -91.77 -0.58 -1.34 16 15 C -0.16 -1.42 10.14 -26.69 -0.27 -1.69 16 16 C -0.16 -1.32 10.24 -26.69 -0.27 -1.59 16 17 N -0.32 -4.55 12.24 32.42 0.40 -4.15 16 18 N -0.37 -4.73 4.04 -65.10 -0.26 -5.00 16 19 C 0.09 0.78 11.33 59.85 0.68 1.46 16 20 C -0.15 -2.75 5.63 -26.84 -0.15 -2.90 16 21 C 0.17 4.08 4.86 -3.94 -0.02 4.06 16 22 N -0.58 -13.91 2.70 -165.04 -0.45 -14.36 16 23 C -0.25 -6.68 9.58 -15.06 -0.14 -6.83 16 24 H 0.07 1.68 7.88 -52.49 -0.41 1.26 16 25 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 26 N -0.90 -25.79 11.20 55.49 0.62 -25.17 16 27 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.99 5.76 -51.93 -0.30 0.69 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.40 3.46 8.60 -40.82 -0.35 3.11 16 37 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.11 0.63 7.12 -51.92 -0.37 0.26 16 39 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.10 1.03 7.88 -51.92 -0.41 0.62 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 0.47 7.10 -51.93 -0.37 0.10 16 47 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 50 H 0.02 0.52 7.52 -51.93 -0.39 0.13 16 51 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 409.57 15.07 6.17 6.17 Total: -1.00 -35.70 409.57 -10.58 -46.28 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.27 Total: 3.97 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -3.49 Total: 3.13 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -0.05 Total: -65.97 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.70 -10.58 -46.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948061208.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.473 kcal (2) G-P(sol) polarization free energy of solvation -35.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds